Mutations that adapt SARS-CoV-2 to mink or ferret do not increase fitness in the human airway
Open accessAbstract
SARS-CoV-2 has a broad mammalian species tropism infecting humans, cats, dogs, and farmed mink. Since the start of the 2019 pandemic, several reverse zoonotic outbreaks of SARS-CoV-2 have occurred in mink, one of which reinfected humans and caused a cluster of infections in Denmark. Here we investigate the molecular basis of mink and ferret adaptation and demonstrate the spike mutations Y453F, F486L, and N501T all specifically adapt SARS-CoV-2 to use mustelid ACE2. Furthermore, we risk assess these mutations and conclude mink-adapted viruses are unlikely to pose an increased threat to humans, as Y453F attenuates the virus replication in human cells and all three mink adaptations have minimal antigenic impact. Finally, we show that certain SARS-CoV-2 variants emerging from circulation in humans may naturally have a greater propensity to infect mustelid hosts and therefore these species should continue to be surveyed for reverse zoonotic infections.
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The F486L mutation has been shown to directly enhance entry into cells expressing mink or ferret ACE2.
“The F486L mutation has been shown to directly enhance entry into cells expressing mink or ferret ACE2 (ref. 12).”
From Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa (2022) · cites this paper as [12]
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Katoh, K., & Standley, D. M. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mst010 · Cited by 46,209 · see citing works
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Stamatakis, A. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu033 · Cited by 32,291 · see citing works
Hoffmann, M., Kleine-Weber, H., Schroeder, S., Krüger, N., Herrler, T., Erichsen, S., Schiergens, T. S., Herrler, G., Wu, N.-H., Nitsche, A., et al. (2020) · Cell · doi:10.1016/j.cell.2020.02.052 · Cited by 20,286 · see citing works
A new coronavirus associated with human respiratory disease in China
Wu, F., Zhao, S., Yu, B., Chen, Y.-M., Wang, W., Song, Z.-G., Hu, Y., Tao, Z.-W., Tian, J.-H., Pei, Y.-Y., et al. (2020) · Nature · doi:10.1038/s41586-020-2008-3 · Cited by 11,688 · see citing works
Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR
Corman, V. M., Landt, O., Kaiser, M., Molenkamp, R., Meijer, A., Chu, D. K. W., Bleicker, T., Brünink, S., Schneider, J. A., Schmidt, M. L., et al. (2020) · Eurosurveillance · doi:10.2807/1560-7917.es.2020.25.3.2000045 · Cited by 7,266 · see citing works
Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2
Yan, R., Zhang, Y., Li, Y., Xia, L., Guo, Y., & Zhou, Q. (2020) · Science · doi:10.1126/science.abb2762 · Cited by 4,950 · see citing works
Yu, G., Smith, D. K., Zhu, H., Guan, Y., & Lam, T. T. (2016) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.12628 · Cited by 4,860 · see citing works
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
Rambaut, A., Holmes, E. C., O’Toole, Á., Hill, V., McCrone, J. T., Ruis, C., du Plessis, L., & Pybus, O. G. (2020) · Nature Microbiology · doi:10.1038/s41564-020-0770-5 · Cited by 2,543 · see citing works
Detection of a SARS-CoV-2 variant of concern in South Africa
Tegally, H., Wilkinson, E., Giovanetti, M., Iranzadeh, A., Fonseca, V., Giandhari, J., Doolabh, D., Pillay, S., San, E. J., Msomi, N., et al. (2021) · Nature · doi:10.1038/s41586-021-03402-9 · Cited by 2,510 · see citing works
Starr, T. N., Greaney, A. J., Hilton, S. K., Ellis, D., Crawford, K. H. D., Dingens, A. S., Navarro, M. J., Bowen, J. E., Tortorici, M. A., Walls, A. C., et al. (2020) · Cell · doi:10.1016/j.cell.2020.08.012 · Cited by 1,956 · see citing works
Hoffmann, M., Kleine-Weber, H., & Pöhlmann, S. (2020) · Molecular Cell · doi:10.1016/j.molcel.2020.04.022 · Cited by 1,852 · see citing works
Multiple SARS-CoV-2 variants escape neutralization by vaccine-induced humoral immunity
Garcia-Beltran, W. F., Lam, E. C., St. Denis, K., Nitido, A. D., Garcia, Z. H., Hauser, B. M., Feldman, J., Pavlovic, M. N., Gregory, D. J., Poznansky, M. C., et al. (2021) · Cell · doi:10.1016/j.cell.2021.03.013 · Cited by 1,353 · see citing works
Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans
Munnink, B. B. O., Sikkema, R. S., Nieuwenhuijse, D. F., Molenaar, R. J., Münger, E., Molenkamp, R., van der Spek, A. N., Tolsma, P., Rietveld, A., Brouwer, M., et al. (2020) · Science · doi:10.1126/science.abe5901 · Cited by 1,087 · see citing works
Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool
O’Toole, A. N., Scher, E., Underwood, A. P., Jackson, B., Hill, V., McCrone, J. T., Colquhoun, R., Ruis, C., Abudahab, K., Taylor, B. E. W., et al. (2021) · Virus Evolution · doi:10.1093/ve/veab064 · Cited by 1,079 · see citing works
Infection and Rapid Transmission of SARS-CoV-2 in Ferrets
Kim, Y., Kim, S.-G., Kim, S.-M., Kim, E.-H., Park, S.-J., Yu, K.-M., Chang, J.-H., Kim, E. J., Lee, S., Casel, M. A. B., et al. (2020) · Cell Host & Microbe · doi:10.1016/j.chom.2020.03.023 · Cited by 883 · see citing works
The furin cleavage site in the SARS-CoV-2 spike protein is required for transmission in ferrets
Peacock, T. P., Goldhill, D. H., Zhou, J., Baillon, L., Frise, R., Swann, O. C., Kugathasan, R., Penn, R., Brown, J. C., Sanchez-David, R. Y., et al. (2021) · Nature Microbiology · doi:10.1038/s41564-021-00908-w · Cited by 770 · see citing works
Self-citationReceptor binding and priming of the spike protein of SARS-CoV-2 for membrane fusion
Benton, D. J., Wrobel, A. G., Xu, P., Roustan, C., Martin, S. R., Rosenthal, P. B., Skehel, J. J., & Gamblin, S. J. (2020) · Nature · doi:10.1038/s41586-020-2772-0 · Cited by 763 · see citing works
Adaptation of SARS-CoV-2 in BALB/c mice for testing vaccine efficacy
Gu, H., Chen, Q., Yang, G., He, L., Fan, H., Deng, Y.-Q., Wang, Y., Teng, Y., Zhao, Z., Cui, Y., et al. (2020) · Science · doi:10.1126/science.abc4730 · Cited by 762 · see citing works
SARS-CoV-2 spike L452R variant evades cellular immunity and increases infectivity
Motozono, C., Toyoda, M., Zahradnik, J., Saito, A., Nasser, H., Tan, T. S., Ngare, I., Kimura, I., Uriu, K., Kosugi, Y., et al. (2021) · Cell Host & Microbe · doi:10.1016/j.chom.2021.06.006 · Cited by 586 · see citing works
Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform
Thao, T. T. N., Labroussaa, F., Ebert, N., V’kovski, P., Stalder, H., Portmann, J., Kelly, J. N., Steiner, S., Holwerda, M., Kratzel, A., et al. (2020) · Nature · doi:10.1038/s41586-020-2294-9 · Cited by 485 · see citing works
Hemagglutinin receptor binding avidity drives influenza A virus antigenic drift
Hensley, S. E., Das, S. R., Bailey, A. L., Schmidt, L. M., Hickman, H. D., Jayaraman, A., Viswanathan, K., Raman, R., Sasisekharan, R., Bennink, J. R., et al. (2009) · Science · doi:10.1126/science.1178258 · Cited by 484 · see citing works
McKay, P. F., Hu, K., Blakney, A. K., Samnuan, K., Brown, J. C., Penn, R., Zhou, J., Bouton, C. R., Rogers, P., Polra, K., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-17409-9 · Cited by 462 · see citing works
Self-citationDavidson, A. D., Williamson, M. K., Lewis, S., Shoemark, D., Carroll, M. W., Heesom, K. J., Zambon, M., Ellis, J., Lewis, P. A., Hiscox, J. A., et al. (2020) · Genome Medicine · doi:10.1186/s13073-020-00763-0 · Cited by 457 · see citing works
Self-citationSARS-CoV-2 is transmitted via contact and via the air between ferrets
Richard, M., Kok, A., de Meulder, D., Bestebroer, T. M., Lamers, M. M., Okba, N. M. A., van Vlissingen, M. F., Rockx, B., Haagmans, B. L., Koopmans, M., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-17367-2 · Cited by 438 · see citing works
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7
Meng, B., Kemp, S. A., Papa, G., Datir, R. P., Ferreira, I. A. T. M., Marelli, S., Harvey, W. T., Lytras, S., Mohamed, A., Gallo, G., et al. (2021) · Cell Reports · doi:10.1016/j.celrep.2021.109292 · Cited by 397 · see citing works
Self-citationZhou, J., Otter, J. A., Price, J. R., Cimpeanu, C., Garcia, D. M., Kinross, J. K., Boshier, P. R., Mason, S., Bolt, F., Holmes, A. H., et al. (2020) · Clinical Infectious Diseases · doi:10.1093/cid/ciaa905 · Cited by 260 · see citing works
Self-citationSARS-CoV-2 Transmission between Mink (Neovison vison) and Humans, Denmark
Hammer, A. S., Quaade, M. L., Rasmussen, T. B., Fonager, J., Rasmussen, M., Mundbjerg, K., Lohse, L., Strandbygaard, B., Jørgensen, C. S., Alfaro‐Núñez, A., et al. (2020) · Emerging infectious diseases · doi:10.3201/eid2702.203794 · Cited by 254 · see citing works
Humoral and T-cell responses to SARS-CoV-2 vaccination in patients receiving immunosuppression
Prendecki, M. F., Clarke, C., Edwards, H., McIntyre, S., Mortimer, P. M., Gleeson, S., Martin, P., Thomson, T., Randell, P. A., Shah, A., et al. (2021) · Annals of the Rheumatic Diseases · doi:10.1136/annrheumdis-2021-220626 · Cited by 238 · see citing works
The SARS-CoV-2 Spike protein has a broad tropism for mammalian ACE2 proteins
Conceicao, C., Thakur, N., Human, S., Kelly, J. T., Logan, L., Bialy, D., Bhat, S., Stevenson-Leggett, P., Zagrajek, A. K., Hollinghurst, P., et al. (2020) · PLoS Biology · doi:10.1371/journal.pbio.3001016 · Cited by 211 · see citing works
Self-citationRebendenne, A., Valadão, A. L. C., Tauziet, M., Maarifi, G., Bonaventure, B., Planès, R., McKellar, J., Nisole, S., Arnaud‐Arnould, M., Moncorgé, O., et al. (2021) · Journal of Virology · doi:10.1128/jvi.02415-20 · Cited by 210 · see citing works
Rihn, S. J., Merits, A., Bakshi, S., Turnbull, M. L., Wickenhagen, A., Alexander, A. J. T., Baillie, C., Brennan, B., Brown, F., Brunker, K., et al. (2021) · PLoS Biology · doi:10.1371/journal.pbio.3001091 · Cited by 204 · see citing works
Self-citationBroad and Differential Animal Angiotensin-Converting Enzyme 2 Receptor Usage by SARS-CoV-2
Zhao, X., Chen, D., Szabla, R., Zheng, M., Li, G., Du, P., Zheng, S., Li, X., Song, C., Li, R., et al. (2020) · Journal of Virology · doi:10.1128/jvi.00940-20 · Cited by 165 · see citing works
Larsen, H. D., Fonager, J., Lomholt, F. K., Dalby, T., Benedetti, G., Kristensen, B., Urth, T. R., Rasmussen, M., Lassaunière, R., Rasmussen, T. B., et al. (2021) · Eurosurveillance · doi:10.2807/1560-7917.es.2021.26.5.210009 · Cited by 154 · see citing works
Self-citationStabilizing the closed SARS-CoV-2 spike trimer
Juraszek, J., Rutten, L., Blokland, S., Bouchier, P., Voorzaat, R., Ritschel, T., Bakkers, M. J. G., Renault, L. L. R., & Langedijk, J. P. M. (2021) · Nature Communications · doi:10.1038/s41467-020-20321-x · Cited by 152 · see citing works
SARS-CoV-2 one year on: evidence for ongoing viral adaptation
Peacock, T. P., Penrice-Randal, R., Hiscox, J. A., & Barclay, W. (2021) · Journal of General Virology · doi:10.1099/jgv.0.001584 · Cited by 149 · see citing works
Self-citationIshikawa, H., Meng, F., Kondo, N., Iwamoto, A., & Matsuda, Z. (2012) · Protein Engineering Design and Selection · doi:10.1093/protein/gzs051 · Cited by 138 · see citing works
Flower, B., Brown, J. C., Simmons, B., Moshe, M., Frise, R., Penn, R., Kugathasan, R., Petersen, C., Daunt, A., Ashby, D., et al. (2020) · Thorax · doi:10.1136/thoraxjnl-2020-215732 · Cited by 132 · see citing works
Self-citationGenomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland
Filipe, A. D. S., Shepherd, J. G., Williams, T., Hughes, J., Aranday-Cortés, E., Asamaphan, P., Ashraf, S., Balcazar, C. E., Brunker, K., Campbell, A., et al. (2020) · Nature Microbiology · doi:10.1038/s41564-020-00838-z · Cited by 120 · see citing works
Self-citationLu, L., Sikkema, R. S., Velkers, F. C., Nieuwenhuijse, D. F., Fischer, E. A. J., Meijer, P. A., Bouwmeester-Vincken, N., Rietveld, A., Wegdam-Blans, M. C. A., Tolsma, P., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-27096-9 · Cited by 120 · see citing works
Rathnasinghe, R., Jangra, S., Čupić, A., Martínez‐Romero, C., Mulder, L. C. F., Kehrer, T., Yildiz, S., Choi, A., Mena, I., Vrieze, J. D., et al. (2021) · medRxiv · doi:10.1101/2021.01.19.21249592 · Cited by 118 · see citing works
Bayarri‐Olmos, R., Rosbjerg, A., Johnsen, L. B., Helgstrand, C., Bak-Thomsen, T. H., Garred, P., & Skjoedt, M. (2021) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2021.100536 · Cited by 96 · see citing works
SARS-CoV-2 mutations acquired in mink reduce antibody-mediated neutralization
Hoffmann, M., Zhang, L., Krüger, N., Graichen, L., Kleine‐Weber, H., Hofmann-Winkler, H., Kempf, A. M., Nessler, S., Riggert, J., Winkler, M. S., et al. (2021) · Cell Reports · doi:10.1016/j.celrep.2021.109017 · Cited by 89 · see citing works
Ferrets as Models for Influenza Virus Transmission Studies and Pandemic Risk Assessments
Belser, J. A., Barclay, W., Barr, I., Fouchier, R. A. M., Matsuyama, R., Nishiura, H., Peiris, M. J. S., Russell, C. J., Subbarao, K., Zhu, H., et al. (2018) · Emerging infectious diseases · doi:10.3201/eid2406.172114 · Cited by 78 · see citing works
Self-citationBrown, J. C., Goldhill, D. H., Zhou, J., Peacock, T. P., Frise, R., Goonawardane, N., Baillon, L., Kugathasan, R., Pinto, A., McKay, P. F., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.02.24.432576 · Cited by 68 · see citing works
Self-citationIntranasal Infection of Ferrets with SARS-CoV-2 as a Model for Asymptomatic Human Infection
Everett, H., Lean, F. Z. X., Byrne, A. M. P., van Diemen, P. M., Rhodes, S. G., James, J., Mollett, B. C., Coward, V. J., Skinner, P., Warren, C. J., et al. (2021) · Viruses · doi:10.3390/v13010113 · Cited by 65 · see citing works
Moshe, M., Daunt, A., Flower, B., Simmons, B., Brown, J. C., Frise, R., Penn, R., Kugathasan, R., Petersen, C., Stockmann, H., et al. (2021) · BMJ · doi:10.1136/bmj.n423 · Cited by 65 · see citing works
Self-citationPossible host-adaptation of SARS-CoV-2 due to improved ACE2 receptor binding in mink
Welkers, M. R. A., Han, A. X., Reusken, C. B. E. M., & Eggink, D. (2020) · Virus Evolution · doi:10.1093/ve/veaa094 · Cited by 49 · see citing works
Severe Acute Respiratory Syndrome Coronavirus 2 in Farmed Mink ( Neovison vison ), Poland
Rąbalski, Ł., Kosiński, M., Smura, T., Aaltonen, K., Kant, R., Sironen, T. A., Szewczyk, B., & Grzybek, M. (2021) · Emerging infectious diseases · doi:10.3201/eid2709.210286 · Cited by 49 · see citing works
Lassaunière, R., Fonager, J., Rasmussen, M., Frische, A., Polacek, C., Rasmussen, T. B., Lohse, L., Belsham, G. J., Underwood, A. P., Winckelmann, A. A., et al. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.698944 · Cited by 43 · see citing works
Self-citationDong, X., Muñoz‐Basagoiti, J., Rickett, N. Y., Pollakis, G. P., Paxton, W. A., Günther, S., Kerber, R., Ng, L. F. P., Elmore, M. J., Magassouba, N., et al. (2020) · Genome biology · doi:10.1186/s13059-020-02148-3 · Cited by 27 · see citing works
Self-citationThakur, N., Conceicao, C., Isaacs, A., Human, S., Modhiran, N., McLean, R. K., Pedrera, M., Tan, T. K., Rijal, P., Townsend, A., et al. (2020) · Journal of General Virology · doi:10.1099/jgv.0.001506 · Cited by 25 · see citing works
Self-citationGaida, A., Becker, M. M., Schmid, C. D., Bühlmann, T., Louis, E. J., & Beck, H. (2011) · PLoS ONE · doi:10.1371/journal.pone.0017782 · Cited by 13 · see citing works
2020 Hindsight: Should evolutionary virologists have expected the unexpected during a pandemic?
Goldhill, D. H., & Barclay, W. (2021) · Evolution · doi:10.1111/evo.14317 · Cited by 6 · see citing works
Self-citationLu, L., Sikkema, R. S., Velkers, F. C., Nieuwenhuijse, D. F., Fischer, E. A. J., Meijer, P. A., Bouwmeester-Vincken, N., Rietveld, A., Wegdam-Blans, M. C. A., Tolsma, P., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.07.13.452160 · Cited by 2 · see citing works
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Willett, B. J., Grove, J., MacLean, O. A., Wilkie, C., De Lorenzo, G., Furnon, W., Cantoni, D., Scott, S., Logan, N., Ashraf, S., et al. (2022) · Nature Microbiology · doi:10.1038/s41564-022-01143-7 · Cited by 785 · see citing works
Self-citationEmergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa
Tegally, H., Moir, M., Everatt, J., Giovanetti, M., Scheepers, C., Wilkinson, E., Subramoney, K., Makatini, Z., Moyo, S., Amoako, D. G., et al. (2022) · Nature Medicine · doi:10.1038/s41591-022-01911-2 · Cited by 707 · see citing works
Self-citationDivergent SARS-CoV-2 variant emerges in white-tailed deer with deer-to-human transmission
Pickering, B., Lung, O., Maguire, F., Kruczkiewicz, P., Kotwa, J. D., Buchanan, T., Gagnier, M., Guthrie, J. L., Jardine, C. M., Marchand‐Austin, A., et al. (2022) · Nature Microbiology · doi:10.1038/s41564-022-01268-9 · Cited by 266 · see citing works
Peacock, T. P., Brown, J. C., Zhou, J., Thakur, N., Sukhova, K., Newman, J., Kugathasan, R., Yan, A. W. C., Furnon, W., Lorenzo, G. D., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.12.31.474653 · Cited by 251 · see citing works
Self-citationTransmission of SARS-CoV-2 from humans to animals and potential host adaptation
Tan, C. C. S., Lam, S. D., Richard, D., Owen, C. J., Berchtold, D., Orengo, C. A., Nair, M. S., Kuchipudi, S. V., Kapur, V., van Dorp, L., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-30698-6 · Cited by 150 · see citing works
Recurrent SARS-CoV-2 mutations in immunodeficient patients
Wilkinson, S., Richter, A., Casey, A., Osman, H. K. E., Mirza, J. D., Stockton, J., Quick, J., Ratcliffe, L., Sparks, N., Cumley, N., et al. (2022) · Virus Evolution · doi:10.1093/ve/veac050 · Cited by 118 · see citing works
Self-citationSARS-CoV-2 variants evolve convergent strategies to remodel the host response
Bouhaddou, M., Reuschl, A., Polacco, B. J., Thorne, L., Ummadi, M. R., Ye, C., Rosales, R., Pelin, A., Batra, J., Jang, G. Μ., et al. (2023) · Cell · doi:10.1016/j.cell.2023.08.026 · Cited by 116 · see citing works
Self-citationEvolution of enhanced innate immune suppression by SARS-CoV-2 Omicron subvariants
Reuschl, A.-K., Thorne, L. G., Whelan, M., Ragazzini, R., Furnon, W., Cowton, V. M., Lorenzo, G. D., Mesner, D., Turner, J., Dowgier, G., et al. (2023) · bioRxiv · doi:10.1038/s41564-023-01588-4 · Cited by 61 · see citing works
Self-citationThe past, current and future epidemiological dynamic of SARS-CoV-2
Balloux, F., Tan, C. C. S., Swadling, L., Richard, D., Jenner, C., Maini, M. K., & van Dorp, L. (2022) · Oxford Open Immunology · doi:10.1093/oxfimm/iqac003 · Cited by 37 · see citing works
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Bai, H., & Ingber, D. E. (2022) · Physiology · doi:10.1152/physiol.00012.2022 · Cited by 39 · see citing works
Ou, X., Xu, G. Z., Li, P., Liu, Y., Zan, F., Liu, P., Hu, J., Lu, X., Dong, S., Zhou, Y., et al. (2023) · Cell Discovery · doi:10.1038/s41421-023-00581-9 · Cited by 35 · see citing works
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Yan, K., Dumenil, T. D., Tang, B., Le, T. T., Bishop, C., Suhrbier, A., & Rawle, D. J. (2022) · Virus Evolution · doi:10.1093/ve/veac063 · Cited by 34 · see citing works
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Su, C., He, J., Han, P., Bai, B., Li, D., Cao, J. X., Tian, M., Hu, Y., Zheng, A., Niu, S., et al. (2022) · Journal of Virology · doi:10.1128/jvi.00814-22 · Cited by 34 · see citing works
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Furnon, W., Cowton, V. M., Lorenzo, G. D., Orton, R. J., Herder, V., Cantoni, D. M., Ilia, G., Mendonça, D. C., Kerr, K., Allan, J., et al. (2025) · Nature Microbiology · doi:10.1038/s41564-024-01878-5 · Cited by 23 · see citing works
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Feng, Y., Yi, J., Yang, L., Wang, Y., Wen, J., Zhao, W., Kim, P., & Zhou, X. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad958 · Cited by 24 · see citing works
Michelitsch, A., Allendorf, V., Conraths, F. J., Gethmann, J. M., Schulz, J., Wernike, K., & Denzin, N. (2023) · Viruses · doi:10.3390/v15040837 · Cited by 21 · see citing works
Zoonosis and zooanthroponosis of emerging respiratory viruses
Khalil, A. M., Martínez‐Sobrido, L., & Mostafa, A. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1232772 · Cited by 18 · see citing works
Hassanin, A., Tú, V. T., Görföl, T., LAM, N. Q., Pham, P. V., Hang, C. T., Tuấn, T. A., Prot, M., Simon‐Lorière, E., Kemenesi, G., et al. (2024) · Molecular Ecology · doi:10.1111/mec.17486 · Cited by 18 · see citing works
Neerukonda, S. N., Wang, R., Vassell, R. A., Baha, H., Lusvarghi, S., Liu, S., Wang, T. T., Weiss, C. D., & Wang, W. (2022) · Journal of Virology · doi:10.1128/jvi.01140-22 · Cited by 17 · see citing works
Omicron breakthrough infections in vaccinated or previously infected hamsters
Zhou, J., Sukhova, K., McKay, P. F., Kurshan, A., Yau, Y., Lechmere, T., Brown, J. C., Moshe, M., Kugathasan, R., Snell, L. B., et al. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2308655120 · Cited by 14 · see citing works
Self-citationRasmussen, T. B., Qvesel, A. G., Pedersen, A. G., Olesen, A. S., Fonager, J., Rasmussen, M., Sieber, R. N., Stegger, M., Calvo-Artavia, F. F., Goedknegt, M. J. F., et al. (2024) · PLoS Pathogens · doi:10.1371/journal.ppat.1012039 · Cited by 14 · see citing works
Global landscape of the host response to SARS-CoV-2 variants reveals viral evolutionary trajectoriesPreprint
Bouhaddou, M., Reuschl, A., Polacco, B. J., Thorne, L., Ummadi, M. R., Ye, C., Rosales, R., Pelin, A., Batra, J., Jang, G. Μ., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.10.19.512927 · Cited by 14 · see citing works
Self-citationTransmissibility and pathogenicity of SARS-CoV-2 variants in animal models
Kim, Y.-I., Casel, M. A. B., & Choi, Y.-K. (2022) · Journal of Microbiology · doi:10.1007/s12275-022-2033-z · Cited by 13 · see citing works
Risk assessment of SARS-CoV-2 replicating and evolving in animals
Zhao, J., Kang, M., Wu, H., Sun, B., Baele, G., He, W., Lu, M., Suchard, M. A., Ji, X., He, N., et al. (2023) · Trends in Microbiology · doi:10.1016/j.tim.2023.07.002 · Cited by 11 · see citing works
Lustig, G., Ganga, Y., Rodel, H. E., Tegally, H., Khairallah, A., Jackson, L., Cele, S., Khan, K., Jule, Z., Reedoy, K., et al. (2023) · Virus Evolution · doi:10.1093/ve/vead075 · Cited by 11 · see citing works
Propylene glycol inactivates respiratory viruses and prevents airborne transmission
Styles, C. T., Zhou, J., Flight, K. E., Brown, J. C., Lewis, C. B., Wang, X., Oever, M. V., Peacock, T. P., Wang, Z., Millns, R., et al. (2023) · EMBO Molecular Medicine · doi:10.15252/emmm.202317932 · Cited by 10 · see citing works
Self-citationReuss, D., Brown, J. C., Sukhova, K., Furnon, W., Cowton, V. M., Patel, A. H., Palmarini, M., Thompson, C., & Barclay, W. (2025) · Virology · doi:10.1016/j.virol.2025.110556 · Cited by 9 · see citing works
Self-citationPitsillou, E., Yu, Y., Beh, R. C., Liang, J. J., Hung, A., & Karagiannis, T. C. (2023) · Clinical and Experimental Medicine · doi:10.1007/s10238-023-01168-0 · Cited by 9 · see citing works
Erabi, G., Faridzadeh, A., Parvin, A., Deravi, N., Rahmanian, M., Fathi, M., Aleebrahim-Dehkordi, E., & Rezaei, N. (2024) · Health Science Reports · doi:10.1002/hsr2.1873 · Cited by 5 · see citing works
Ghai, R. R., Straily, A., Wineland, N. E., Calogero, J., Stobierski, M. G., Signs, K. A., Blievernicht, M., Torres-Mendoza, Y., Waltenburg, M. A., Condrey, J. A., et al. (2023) · Viruses · doi:10.3390/v15122436 · Cited by 7 · see citing works
Infectious droplet exposure is an inefficient route for SARS-CoV-2 infection in the ferret model
James, J., Byrne, A. M. P., Goharriz, H., Golding, M., Amaya-Cuesta, J., Mollett, B. C., Shipley, R., McElhinney, L. M., Fooks, A. R., & Brookes, S. M. (2022) · Journal of General Virology · doi:10.1099/jgv.0.001799 · Cited by 7 · see citing works
Thinking Outside the Box: Utilizing Nontraditional Animal Models for COVID-19 Research
Gunasekara, S., Selvan, M. T., Miller, C. A., & Rudd, J. M. (2022) · International Journal of Translational Medicine · doi:10.3390/ijtm2010010 · Cited by 5 · see citing works
Does having a cat in your house increase your risk of catching COVID-19?
Allendorf, V., Denzin, N., Conraths, F. J., Boden, L., Elvinger, F. C., Magouras, I., Stegeman, A., Wood, J. L. N., Carvajal, A., Grace, K., et al. (2022) · One Health · doi:10.1016/j.onehlt.2022.100381 · Cited by 7 · see citing works
Lustig, G., Ganga, Y., Rodel, H. E., Tegally, H., Jackson, L., Cele, S., Khan, K., Jule, Z., Reedoy, K., Karim, F., et al. (2022) · medRxiv · doi:10.1101/2022.11.23.22282673 · Cited by 7 · see citing works
The panzootic potential of SARS-CoV-2
Mabry, M. E., Fanelli, A., Mavian, C., Lorusso, A., Manes, C., Soltis, P., & Capua, I. (2023) · BioScience · doi:10.1093/biosci/biad102 · Cited by 3 · see citing works
Sequence signatures within the genome of SARS-CoV-2 can be used to predict host source
Rudar, J., Kruczkiewicz, P., Vernygora, O. V., Golding, G. B., Hajibabaei, M., & Lung, O. (2024) · Microbiology Spectrum · doi:10.1128/spectrum.03584-23 · Cited by 4 · see citing works
Mycophenolic acid treatment drives the emergence of novel SARS-CoV-2 variants
Meister, T. L., Nocke, M. K., Heinen, N., Burkard, T. L., Brüggemann, Y., Westhoven, S., Trüeb, B. S., Ebert, N., Thomann, L., Lubieniecki, K. P., et al. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2500276122 · Cited by 7 · see citing works
Olguin-Nava, M., Bohn, P. S., Hennig, T., Börtlein, C., Gribling-Burrer, A.-S., Schmidt, N., Caliskan, N., Dölken, L., Munschauer, M., & Smyth, R. P. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.02.05.578560 · Cited by 3 · see citing works
Thakur, N., Newman, J., Ni, D., Seow, J., Hay, A. L., Lee, Y., Upadhyay, A., Ekundayo, B., Hammond, J. A., Peacock, T. P., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.12688/verixiv.2534.1 · Cited by 3 · see citing works
Self-citationWill animal reservoirs give us the next SARS-CoV-2 variant?
Smith, D. M. (2026) · PLoS Pathogens · doi:10.1371/journal.ppat.1014008 · Cited by 2 · see citing works
Animal Ethics and Zoonosis Risks
Opriessnig, T., & Halbur, P. G. (2023) · Springer eBooks · doi:10.1007/978-3-031-29071-8_8 · Cited by 2 · see citing works
Iglesias‐Caballero, M., Más, V., Vázquez‐Morón, S., Vázquez, M., Camarero-Serrano, S., Cano, O., Palomo, C., Ruano, M. J., Cano‐Gómez, C., Infantes‐Lorenzo, J. A., et al. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25105499 · Cited by 2 · see citing works
Using minor variant genomes and machine learning to study the genome biology of SARS-CoV-2 over time
Dong, X., Matthews, D. A., Gallo, G., Darby, A. C., Donovan-Banfield, I., Goldswain, H., MacGill, T. C., Myers, T. E., Orr, R., Bailey, D., et al. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf077 · Cited by 2 · see citing works
Self-citationThakur, N., Newman, J., Ni, D., Seow, J., Hay, A. L., Lee, Y., Upadhyay, A., Ekundayo, B., Hammond, J. A., Peacock, T. P., et al. (2026) · PLoS Biology · doi:10.1371/journal.pbio.3003944 · Cited by 1 · see citing works
Self-citationPluripotent Stem Cells of Order Carnivora: Technical Perspective
Menzorov, A. G. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24043905 · Cited by 1 · see citing works
Sandoval, C., Ballesteros, N., Pinilla, J. C., Hernández, C., Muñoz, M., & Ramírez, J. D. (2024) · Veterinary Research Communications · doi:10.1007/s11259-024-10374-4 · Cited by 1 · see citing works
SARS-CoV-2 strains bearing Omicron BA.1 spike replicate in C57BL/6 mice
Ogger, P. P., Martín, M. G., Jang, S., Zhou, J., Brown, J. C., Sukhova, K., Furnon, W., Patel, A. H., Cowton, V. M., Palmarini, M., et al. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1383612 · Cited by 1 · see citing works
Self-citationThe recurrent Spike A222V mutation in SARS-CoV-2 enhances replication in primary deer lung cells
Cereghino, C., Tiller, K., Kang, L., Michalak, P., & Weger‐Lucarelli, J. (2025) · Virus Evolution · doi:10.1093/ve/veaf059 · Cited by 1 · see citing works
Peka, M., & Balatsky, V. (2023) · Veterinary and Animal Science · doi:10.1016/j.vas.2023.100303 · Cited by 1 · see citing works
SARS-CoV-2 envelope protein induces LC3 lipidation via the V-ATPase-ATG16L1 axisPreprint
Figueras-Novoa, C., Timimi, L., Marcassa, E., Taveira‐Marques, R., Adams, L., Jiang, M., Wu, M., Montaner, B., Ng, K. W., Lorenzo, G. D., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.06.12.659257 · Cited by 1 · see citing works
Self-citationNeerukonda, S. N., Wang, R., Vassell, R. A., Baha, H., Lusvarghi, S., Liu, S., Wang, T. T., Weiss, C. D., & Wang, W. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.06.01.494385
Quaade, M. L., Jensen, M. M., Rasmussen, T. B., Jensen, T. K., & Hammer, A. S. (2025) · Acta veterinaria Scandinavica · doi:10.1186/s13028-025-00813-w
Enhanced reverse zoonotic potential and immune evasion by omicron JN.1 variant
Hu, J., Zan, F., He, Y., Ou, X., Tang, X., Liu, Y., Lü, X., Li, P., Mu, Z., Dong, S., et al. (2025) · iScience · doi:10.1016/j.isci.2025.112824
Smičius, M., Olendraitė, I., Bačelis, J., Šimaitis, A., Gabrielaitė, M., Munnink, B. B. O., Sikkema, R. S., Stankevi̇či̇us, A., Janeliūnas, Ž., Bušauskas, P., et al. (2025) · medRxiv · doi:10.1101/2025.07.15.25331253
Evolutionary rewiring of host metabolism and interferon signalling by SARS-CoV-2 variantsPreprint
Somji, R., Brown, J. C., Rowles-Khalid, S., Abdullahi, T. B., Luo, D., Barthel, N., Mülleder, M., Ralser, M., Barclay, W., Rallis, C., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.11.15.688605
Self-citationHigh-Fidelity and Cost-Effective Engineering of SARS-CoV-2
Olguin-Nava, M., Hennig, T., Börtlein, C., Bohn, P. S., Ambi, U. B., Gabel, A., Günter, L. M., Gribling-Burrer, A.-S., Schmidt, N., Caliskan, N., et al. (2025) · Viruses · doi:10.3390/v17121604
Molecular basis of fox ACE2 recognition by receptor binding domains of SARS-CoV-2 and PCoV-GD
Wang, C., Nan, X., Pei, C., Li, M., Wu, J., Wang, Z., Fan, S., & Lan, J. (2026) · Cell Insight · doi:10.1016/j.cellin.2026.100314
Thomou, Z., Dovas, C. Ι., Poutahidis, T., Argiriou, A., Mouchtaropoulou, E., Zaralis, K., Koenen, J. J. H., & Chaintoutis, S. C. (2026) · Viral Immunology · doi:10.1177/08828245261444539
Zrelovs, Ņ., Oļševskis, E., Perevoščikovs, J., Silamiķelis, I., Jakovele, A., Lamberga, K., Bērziņš, A., Brīvība, M., & Kloviņš, J. (2026) · Virus Evolution · doi:10.1093/ve/veag038
Panwar, A., Raut, A. A., Kumar, A., Sharma, S., Jangir, A., Saran, S., Kumar, P., Joshi, P., Singh, R. K., & Mishra, A. (2026) · International Journal of Molecular Sciences · doi:10.3390/ijms27209319
- Authors
- Zhou, J., Peacock, T. P., Brown, J. C., Goldhill, D. H., Elrefaey, A. M. E., Penrice-Randal, R., Cowton, V. M., De Lorenzo, G., Furnon, W., Harvey, W. T., Kugathasan, R., Frise, R., Baillon, L., Lassaunière, R., Thakur, N., Gallo, G., Goldswain, H., Donovan-Banfield, I., Dong, X., Randle, N. P., Sweeney, F., Glynn, M. C., Quantrill, J. L., McKay, P. F., Patel, A. H., Palmarini, M., Hiscox, J. A., Bailey, D., & Barclay, W. S.
- Affiliations
- Imperial College London (GB)
- The Pirbright Institute (GB)
- University of Liverpool (GB)
- MRC University of Glasgow Centre for Virus Research (GB)
- Statens Serum Institut (DK)
- Agency for Science, Technology and Research (SG)
- ORCID
- Zhou, Jie
- Peacock, Thomas P.
- Brown, Jonathan C.
- Goldhill, Daniel H.
- Elrefaey, Ahmed M.E.
- Penrice-Randal, Rebekah
- Cowton, Vanessa M.
- Furnon, Wilhelm
- Harvey, William T.
- Kugathasan, Ruthiran
- Frise, Rebecca
- Baillon, Laury
- Lassaunière, Ria
- Thakur, Nazia
- Gallo, Giulia
- Goldswain, Hannah
- Donovan-Banfield, I'ah
- Dong, Xiaofeng
- Randle, Nadine P.
- Quantrill, Jessica L.
- McKay, Paul F.
- Patel, Arvind H.
- Palmarini, Massimo
- Hiscox, Julian A.
- Bailey, Dalan
- Venue
- Cell Reports
- Publisher
- Elsevier BV
- Published
- 2022-02
- Volume
- 38
- Issue
- 6
- Pages
- 110344
- ISSN
- 2211-1247 (ISSN-L)
- PMC
- PMC8768428
- OpenAlex
- W4206586685
- Cited by
- 64
- References
- 57
- Citations by year
- 2026: 6 · 2025: 12 · 2024: 11 · 2023: 16 · 2022: 19
- FWCI
- 7.08
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Cell Reports (publishedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam) (acceptedVersion, cc-by-sa)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Spiral (Imperial College London) (submittedVersion, cc-by-nc-nd)
- Funders
- U.S. Food and Drug Administration (5F40120C00085, MC_UU12014/2)
- Public Health England (SARS-CoV-2/hu/DK/CL-5/1)
- BBSRC (BBS/E/I/00007038)
- Wellcome Trust (206369/Z/17/Z)
- Pirbright Institute
- MRC (MR/W005611/1)
- Topics
- Health Sciences › Medicine › Infectious Diseases › SARS-CoV-2 and COVID-19 Research
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Virus Infections Studies
- Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Zoonotic diseases and public health
- Keywords
- SARS-CoV-2, mink, ferrets, spike protein mutations, reverse zoonosis, host adaptation, viral fitness, risk assessment, reservoir hosts, viral variants
- MeSH terms
- COVID-19, SARS-CoV-2, Viral Zoonoses, Adaptation, Biological, Animals, Ferrets, Humans, Mink, Mutation, Respiratory System, Genetic Fitness, Pandemics, Spike Glycoprotein, Coronavirus
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