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ARAP2 regulates responses to interferon-gamma by restricting SOCS1
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Abstract
Interferon-gamma (IFNγ) is critical for immunity against intra-macrophagic pathogens, signaling through the Janus kinase (JAK)-signal transducer and activator of transcription (STAT) pathway to induce a tyrosine-phosphorylation cascade that ensures a potent immune response. Excessive JAK-STAT signaling can drive hyperinflammation and autoimmunity; thus, signaling is tightly and selectively regulated by the IFNγ-inducible protein, suppressor of cytokine signaling 1 (SOCS1). SOCS1 inhibits signaling by directly blocking JAK kinase activity. Here, we identified a SOCS1-interacting partner, ankyrin repeat and pleckstrin homology domain 2 (ARAP2), that fine-tunes SOCS1 function. We report that tyrosine 415 in ARAP2 binds the SOCS1-Src homology 2 (SH2) domain and limits the ability of SOCS1 to inhibit IFNγ signaling. Our findings show that ARAP2 promotes the IFNγ response through a phosphorylation-dependent interaction with the negative regulator SOCS1, and this exacerbates inflammation in a mouse model of influenza virus infection.
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The molecular basis of JAK/STAT inhibition by SOCS1
Liau, N. P. D., Laktyushin, A., Lucet, I. S., Murphy, J. M., Yao, S., Whitlock, E., Callaghan, K., Nicola, N. A., Kershaw, N. J., & Babon, J. J. (2018) · Nature Communications · doi:10.1038/s41467-018-04013-1 · Cited by 456
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Research works printed but not linked: 74
- Casanova, 2024, Interferon-gamma and infectious diseases: Lessons and prospects, Science, 384, 10.1126/science.adl2016 · DOI
- Casanova, 2004, The human model: a genetic dissection of immunity to infection in natural conditions, Nat. Rev. Immunol., 4, 55, 10.1038/nri1264 · DOI
- Casanova, 2022, From rare disorders of immunity to common determinants of infection: Following the mechanistic thread, Cell, 185, 3086, 10.1016/j.cell.2022.07.004 · DOI
- Cooper, 1993, Disseminated tuberculosis in interferon gamma gene-disrupted mice, J. Exp. Med., 178, 2243, 10.1084/jem.178.6.2243 · DOI
- Adams, 2002, The study of Mycobacterium leprae infection in interferon-gamma gene--disrupted mice as a model to explore the immunopathologic spectrum of leprosy, J. Infect. Dis., 185, S1, 10.1086/338002 · DOI
- Heath, 1996, Effector mechanisms responsible for gamma interferon-mediated host resistance to Legionella pneumophila lung infection: the role of endogenous nitric oxide differs in susceptible and resistant murine hosts, Infect. Immun., 64, 5151, 10.1128/iai.64.12.5151-5160.1996 · DOI
- Harty, 1995, Specific immunity to Listeria monocytogenes in the absence of IFN gamma, Immunity, 3, 109, 10.1016/1074-7613(95)90163-9 · DOI
- Wang, 1994, CD4+ effector cells default to the Th2 pathway in interferon gamma-deficient mice infected with Leishmania major, J. Exp. Med., 179, 1367, 10.1084/jem.179.4.1367 · DOI
- Kaposzta, 1998, Characteristics of invasive candidiasis in gamma interferon- and interleukin-4-deficient mice: role of macrophages in host defense against Candida albicans, Infect. Immun., 66, 1708, 10.1128/IAI.66.4.1708-1717.1998 · DOI
- Beer, 2022, Impaired immune response drives age-dependent severity of COVID-19, J. Exp. Med., 219, 10.1084/jem.20220621 · DOI
- Bot, 1998, Protective role of gamma interferon during the recall response to influenza virus, J. Virol., 72, 6637, 10.1128/JVI.72.8.6637-6645.1998 · DOI
- Korholz, 2021, One Gene, Many Facets: Multiple Immune Pathway Dysregulation in SOCS1 Haploinsufficiency, Front. Immunol., 12, 10.3389/fimmu.2021.680334 · DOI
- Endo, 1997, A new protein containing an SH2 domain that inhibits JAK kinases, Nature, 387, 921, 10.1038/43213 · DOI · Paper page
- Naka, 1997, Structure and function of a new STAT-induced STAT inhibitor, Nature, 387, 924, 10.1038/43219 · DOI · Paper page
- Starr, 1998, Liver degeneration and lymphoid deficiencies in mice lacking suppressor of cytokine signaling-1, Proc. Natl. Acad. Sci. USA, 95, 14395, 10.1073/pnas.95.24.14395 · DOI
- Alexander, 1999, SOCS1 is a critical inhibitor of interferon gamma signaling and prevents the potentially fatal neonatal actions of this cytokine, Cell, 98, 597, 10.1016/S0092-8674(00)80047-1 · DOI · Paper page
- Naka, 2001, SOCS-1/SSI-1-deficient NKT cells participate in severe hepatitis through dysregulated cross-talk inhibition of IFN-gamma and IL-4 signaling in vivo, Immunity, 14, 535, 10.1016/S1074-7613(01)00132-7 · DOI
- Gruber, 2023, IL4Ralpha and IL17A Blockade Rescue Autoinflammation in SOCS1 Haploinsufficiency, J. Clin. Immunol., 44, 36, 10.1007/s10875-023-01635-z · DOI
- Hadjadj, 2020, Early-onset autoimmunity associated with SOCS1 haploinsufficiency, Nat. Commun., 11, 5341, 10.1038/s41467-020-18925-4 · DOI · Paper page
- Michniacki, 2022, SOCS1 Haploinsufficiency Presenting as Severe Enthesitis, Bone Marrow Hypocellularity, and Refractory Thrombocytopenia in a Pediatric Patient with Subsequent Response to JAK Inhibition, J. Clin. Immunol., 42, 1766, 10.1007/s10875-022-01346-x · DOI
- Lee, 2020, Immune dysregulation and multisystem inflammatory syndrome in children (MIS-C) in individuals with haploinsufficiency of SOCS1, J. Allergy Clin. Immunol., 146, 1194, 10.1016/j.jaci.2020.07.033 · DOI
- Thaventhiran, 2020, Whole-genome sequencing of a sporadic primary immunodeficiency cohort, Nature, 583, 90, 10.1038/s41586-020-2265-1 · DOI
- Du, 2023, In cis “benign” SOCS1 variants linked to enhanced interferon signaling and autoimmunity, J. Autoimmun., 140, 10.1016/j.jaut.2023.103119 · DOI
- Igarashi, 1994, Interferon-gamma induces tyrosine phosphorylation of interferon-gamma receptor and regulated association of protein tyrosine kinases, Jak1 and Jak2, with its receptor, J. Biol. Chem., 269, 14333, 10.1016/S0021-9258(17)36621-8 · DOI
- Farrar, 1993, The molecular cell biology of interferon-gamma and its receptor, Annu. Rev. Immunol., 11, 571, 10.1146/annurev.iy.11.040193.003035 · DOI
- Sakatsume, 1995, The Jak kinases differentially associate with the alpha and beta (accessory factor) chains of the interferon gamma receptor to form a functional receptor unit capable of activating STAT transcription factors, J. Biol. Chem., 270, 17528, 10.1074/jbc.270.29.17528 · DOI
- Greenlund, 1994, Ligand-induced IFN gamma receptor tyrosine phosphorylation couples the receptor to its signal transduction system (p91), EMBO J., 13, 1591, 10.1002/j.1460-2075.1994.tb06422.x · DOI · Paper page
- Greenlund, 1995, Stat recruitment by tyrosine-phosphorylated cytokine receptors: an ordered reversible affinity-driven process, Immunity, 2, 677, 10.1016/1074-7613(95)90012-8 · DOI
- Shuai, 1994, Interferon activation of the transcription factor Stat91 involves dimerization through SH2-phosphotyrosyl peptide interactions, Cell, 76, 821, 10.1016/0092-8674(94)90357-3 · DOI · Paper page
- Schindler, 1992, Interferon-dependent tyrosine phosphorylation of a latent cytoplasmic transcription factor, Science, 257, 809, 10.1126/science.1496401 · DOI · Paper page
- Shuai, 1992, Activation of transcription by IFN-gamma: tyrosine phosphorylation of a 91-kD DNA binding protein, Science, 258, 1808, 10.1126/science.1281555 · DOI
- Shuai, 1993, A single phosphotyrosine residue of Stat91 required for gene activation by interferon-gamma, Science, 261, 1744, 10.1126/science.7690989 · DOI · Paper page
- ten Hoeve, 2002, Identification of a nuclear Stat1 protein tyrosine phosphatase, Mol. Cell Biol., 22, 5662, 10.1128/MCB.22.16.5662-5668.2002 · DOI · Paper page
- Varinou, 2003, Phosphorylation of the Stat1 transactivation domain is required for full-fledged IFN-gamma-dependent innate immunity, Immunity, 19, 793, 10.1016/S1074-7613(03)00322-4 · DOI · Paper page
- Fenner, 2006, Suppressor of cytokine signaling 1 regulates the immune response to infection by a unique inhibition of type I interferon activity, Nat. Immunol., 7, 33, 10.1038/ni1287 · DOI
- Blumer, 2017, SOCS1 is an inducible negative regulator of interferon lambda (IFN-lambda)-induced gene expression in vivo, J. Biol. Chem., 292, 17928, 10.1074/jbc.M117.788877 · DOI
- Starr, 1997, A family of cytokine-inducible inhibitors of signalling, Nature, 387, 917, 10.1038/43206 · DOI · Paper page
- Zhang, 1999, The conserved SOCS box motif in suppressors of cytokine signaling binds to elongins B and C and may couple bound proteins to proteasomal degradation, Proc. Natl. Acad. Sci. USA, 96, 2071, 10.1073/pnas.96.5.2071 · DOI
- Zhang, 2001, The SOCS box of suppressor of cytokine signaling-1 is important for inhibition of cytokine action in vivo, Proc. Natl. Acad. Sci. USA, 98, 13261, 10.1073/pnas.231486498 · DOI
- Doggett, 2023, The SOCS1 KIR and SH2 domain are both required for suppression of cytokine signaling in vivo, Cytokine, 165, 10.1016/j.cyto.2023.156167 · DOI
- Rusinova, 2013, Interferome v2.0: an updated database of annotated interferon-regulated genes, Nucleic Acids Res., 41, D1040, 10.1093/nar/gks1215 · DOI · Paper page
- Peiris, 2010, Host response to influenza virus: protection versus immunopathology, Curr. Opin. Immunol., 22, 475, 10.1016/j.coi.2010.06.003 · DOI
- Nicol, 2019, Lack of IFNgamma signaling attenuates spread of influenza A virus in vivo and leads to reduced pathogenesis, Virology, 526, 155, 10.1016/j.virol.2018.10.017 · DOI
- Califano, 2018, IFN-gamma increases susceptibility to influenza A infection through suppression of group II innate lymphoid cells, Mucosal Immunol., 11, 209, 10.1038/mi.2017.41 · DOI
- Schmit, 2022, Interferon-gamma promotes monocyte-mediated lung injury during influenza infection, Cell Rep., 38, 10.1016/j.celrep.2022.110456 · DOI
- Bidgood, 2024, SOCS1 is a critical checkpoint in immune homeostasis, inflammation and tumor immunity, Front. Immunol., 15, 10.3389/fimmu.2024.1419951 · DOI
- Miura, 2002, ARAP1: a point of convergence for Arf and Rho signaling, Mol. Cell, 9, 109, 10.1016/S1097-2765(02)00428-8 · DOI
- Yoon, 2006, ARAP2 effects on the actin cytoskeleton are dependent on Arf6-specific GTPase-activating-protein activity and binding to RhoA-GTP, J. Cell Sci., 119, 4650, 10.1242/jcs.03237 · DOI
- Donaldson, 2003, Multiple roles for Arf6: sorting, structuring, and signaling at the plasma membrane, J. Biol. Chem., 278, 41573, 10.1074/jbc.R300026200 · DOI
- Chen, 2014, The Arf6 GTPase-activating proteins ARAP2 and ACAP1 define distinct endosomal compartments that regulate integrin α5β1 traffic, J. Biol. Chem., 289, 30237, 10.1074/jbc.M114.596155 · DOI
- Huang, 2011, Temporal dynamics of host molecular responses differentiate symptomatic and asymptomatic influenza a infection, PLoS Genet., 7, 10.1371/journal.pgen.1002234 · DOI
- Galani, 2017, Interferon-lambda Mediates Non-redundant Front-Line Antiviral Protection against Influenza Virus Infection without Compromising Host Fitness, Immunity, 46, 875, 10.1016/j.immuni.2017.04.025 · DOI
- Garcia-Sastre, 1998, The role of interferon in influenza virus tissue tropism, J. Virol., 72, 8550, 10.1128/JVI.72.11.8550-8558.1998 · DOI
- Babon, 2009, The SOCS box encodes a hierarchy of affinities for Cullin5: implications for ubiquitin ligase formation and cytokine signalling suppression, J. Mol. Biol., 387, 162, 10.1016/j.jmb.2009.01.024 · DOI
- Williams, 2018, Interaction of suppressor of cytokine signalling 3 with cavin-1 links SOCS3 function and cavin-1 stability, Nat. Commun., 9, 168, 10.1038/s41467-017-02585-y · DOI · Paper page
- Linossi, 2021, Discovery of an exosite on the SOCS2-SH2 domain that enhances SH2 binding to phosphorylated ligands, Nat. Commun., 12, 7032, 10.1038/s41467-021-26983-5 · DOI
- Huang, 2022, JAK inhibition as a new treatment strategy for patients with COVID-19, Biochem. Pharmacol., 202, 10.1016/j.bcp.2022.115162 · DOI
- Dalton, 1993, Multiple defects of immune cell function in mice with disrupted interferon-gamma genes, Science, 259, 1739, 10.1126/science.8456300 · DOI
- Delconte, 2016, CIS is a potent checkpoint in NK cell-mediated tumor immunity, Nat. Immunol., 17, 816, 10.1038/ni.3470 · DOI
- Nicholson, 1999, Mutational analyses of the SOCS proteins suggest a dual domain requirement but distinct mechanisms for inhibition of LIF and IL-6 signal transduction, EMBO J., 18, 375, 10.1093/emboj/18.2.375 · DOI · Paper page
- Brown, 2020, An Improved Protocol for the Production of Lentiviral Vectors, STAR Protoc., 1, 10.1016/j.xpro.2020.100152 · DOI
- Gordon, 1991, Use of vanadate as protein-phosphotyrosine phosphatase inhibitor, Methods Enzymol., 201, 477, 10.1016/0076-6879(91)01043-2 · DOI · Paper page
- Huyer, 1997, Mechanism of inhibition of protein-tyrosine phosphatases by vanadate and pervanadate, J. Biol. Chem., 272, 843, 10.1074/jbc.272.2.843 · DOI
- Wisniewski, 2009, Universal sample preparation method for proteome analysis, Nat. Methods, 6, 359, 10.1038/nmeth.1322 · DOI · Paper page
- Cox, 2011, Andromeda: a peptide search engine integrated into the MaxQuant environment, J. Proteome Res., 10, 1794, 10.1021/pr101065j · DOI
- Cox, 2008, MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification, Nat. Biotechnol., 26, 1367, 10.1038/nbt.1511 · DOI · Paper page
- Keilhauer, 2015, Accurate protein complex retrieval by affinity enrichment mass spectrometry (AE-MS) rather than affinity purification mass spectrometry (AP-MS), Mol. Cell. Proteomics, 14, 120, 10.1074/mcp.M114.041012 · DOI
- Perez-Riverol, 2025, The PRIDE database at 20 years: 2025 update, Nucleic Acids Res., 53, D543, 10.1093/nar/gkae1011 · DOI
- Tate, 2010, Critical role of airway macrophages in modulating disease severity during influenza virus infection of mice, J. Virol., 84, 7569, 10.1128/JVI.00291-10 · DOI
- McCarthy, 2017, Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R, Bioinformatics, 33, 1179, 10.1093/bioinformatics/btw777 · DOI · Paper page
- Aran, 2019, Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage, Nat. Immunol., 20, 163, 10.1038/s41590-018-0276-y · DOI · Paper page
- Haghverdi, 2018, Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors, Nat. Biotechnol., 36, 421, 10.1038/nbt.4091 · DOI · Paper page
- Korotkevich, 2021, Fast gene set enrichment analysis, bioRxiv
- Liberzon, 2015, The Molecular Signatures Database (MSigDB) hallmark gene set collection, Cell Syst., 1, 417, 10.1016/j.cels.2015.12.004 · DOI · Paper page
Metadata
- Authors
- Keating, N., Doggett, K., Bidgood, G. M., Meza Guzman, L. G., Dagley, L. F., Li, K., Williams, B. E., Gabrielyan, A., Alvarado, C., Broomfield, B. J., Duckworth, B. C., Hockings, C., Yousef, J., Leong, E., Morris, R., Kueh, A., Garnham, A. L., Giner, G., Casanova, J.-L., Boisson-Dupuis, S., Babon, J. J., Linossi, E. M., Tate, M. D., Groom, J. R., & Nicholson, S. E.
- Affiliations
- The University of Melbourne (AU)
- Hôpital Necker-Enfants Malades (FR)
- University of California, San Francisco (US)
- Hudson Institute of Medical Research (AU)
- Corresponding author
- Nicholson, Sandra E.
- ORCID
- Keating, Narelle
- Doggett, Karen
- Bidgood, Grace M.
- Dagley, Laura F.
- Li, Kunlun
- Williams, Bailey E.
- Alvarado, Carolina
- Broomfield, Benjamin J.
- Duckworth, Brigette C.
- Hockings, Colin
- Yousef, Jumana
- Morris, Rhiannon
- Kueh, Andrew
- Garnham, Alexandra L.
- Giner, Göknur
- Casanova, Jean-Laurent
- Babon, Jeffrey J.
- Linossi, Edmond M.
- Tate, Michelle D.
- Groom, Joanna R.
- Nicholson, Sandra E.
- Venue
- Cell Reports
- Publisher
- Elsevier BV
- Published
- 2025-12
- Volume
- 44
- Issue
- 12
- Pages
- 116667
- ISSN
- 2211-1247 (ISSN-L)
- OpenAlex
- W4417312873
- Cited by
- 1
- References
- 4
- Citations by year
- 2026: 1
- FWCI
- 0.42
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Cell Reports (publishedVersion, cc-by-nc-nd)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- PubMed (publishedVersion)
- HAL (submittedVersion)
- Minerva Access (University of Melbourne) (submittedVersion, cc-by-nc-nd)
- Funders
- National Health and Medical Research Council (1121755, 2011761)
- State Government of Victoria
- Fulbright Association
- University of Melbourne (GNT2007812)
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › Cytokine Signaling Pathways and Interactions
- Life Sciences › Immunology and Microbiology › Immunology › interferon and immune responses
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Tyrosine Phosphatases
- Keywords
- SOCS1, interferon-gamma signaling, JAK/STAT signaling, tyrosine phosphorylation, negative regulation of cytokine signaling, influenza, inflammation, macrophages, autoimmunity
- MeSH terms
- Suppressor of Cytokine Signaling 1 Protein, Animals, Humans, Interferon-gamma, Mice, Inbred C57BL, Orthomyxoviridae Infections, Phosphorylation, Protein Binding, Signal Transduction, src Homology Domains, Adaptor Proteins, Signal Transducing, Mice, HEK293 Cells
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