Cited by 1Cytokine Signaling Pathways and Interactionsinterferon and immune responsesProtein Tyrosine Phosphatases

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ARAP2 regulates responses to interferon-gamma by restricting SOCS1

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Abstract

Interferon-gamma (IFNγ) is critical for immunity against intra-macrophagic pathogens, signaling through the Janus kinase (JAK)-signal transducer and activator of transcription (STAT) pathway to induce a tyrosine-phosphorylation cascade that ensures a potent immune response. Excessive JAK-STAT signaling can drive hyperinflammation and autoimmunity; thus, signaling is tightly and selectively regulated by the IFNγ-inducible protein, suppressor of cytokine signaling 1 (SOCS1). SOCS1 inhibits signaling by directly blocking JAK kinase activity. Here, we identified a SOCS1-interacting partner, ankyrin repeat and pleckstrin homology domain 2 (ARAP2), that fine-tunes SOCS1 function. We report that tyrosine 415 in ARAP2 binds the SOCS1-Src homology 2 (SH2) domain and limits the ability of SOCS1 to inhibit IFNγ signaling. Our findings show that ARAP2 promotes the IFNγ response through a phosphorylation-dependent interaction with the negative regulator SOCS1, and this exacerbates inflammation in a mouse model of influenza virus infection.

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Research works printed but not linked: 74

  1. Casanova, 2024, Interferon-gamma and infectious diseases: Lessons and prospects, Science, 384, 10.1126/science.adl2016 · DOI
  2. Casanova, 2004, The human model: a genetic dissection of immunity to infection in natural conditions, Nat. Rev. Immunol., 4, 55, 10.1038/nri1264 · DOI
  3. Casanova, 2022, From rare disorders of immunity to common determinants of infection: Following the mechanistic thread, Cell, 185, 3086, 10.1016/j.cell.2022.07.004 · DOI
  4. Cooper, 1993, Disseminated tuberculosis in interferon gamma gene-disrupted mice, J. Exp. Med., 178, 2243, 10.1084/jem.178.6.2243 · DOI
  5. Adams, 2002, The study of Mycobacterium leprae infection in interferon-gamma gene--disrupted mice as a model to explore the immunopathologic spectrum of leprosy, J. Infect. Dis., 185, S1, 10.1086/338002 · DOI
  6. Heath, 1996, Effector mechanisms responsible for gamma interferon-mediated host resistance to Legionella pneumophila lung infection: the role of endogenous nitric oxide differs in susceptible and resistant murine hosts, Infect. Immun., 64, 5151, 10.1128/iai.64.12.5151-5160.1996 · DOI
  7. Harty, 1995, Specific immunity to Listeria monocytogenes in the absence of IFN gamma, Immunity, 3, 109, 10.1016/1074-7613(95)90163-9 · DOI
  8. Wang, 1994, CD4+ effector cells default to the Th2 pathway in interferon gamma-deficient mice infected with Leishmania major, J. Exp. Med., 179, 1367, 10.1084/jem.179.4.1367 · DOI
  9. Kaposzta, 1998, Characteristics of invasive candidiasis in gamma interferon- and interleukin-4-deficient mice: role of macrophages in host defense against Candida albicans, Infect. Immun., 66, 1708, 10.1128/IAI.66.4.1708-1717.1998 · DOI
  10. Beer, 2022, Impaired immune response drives age-dependent severity of COVID-19, J. Exp. Med., 219, 10.1084/jem.20220621 · DOI
  11. Bot, 1998, Protective role of gamma interferon during the recall response to influenza virus, J. Virol., 72, 6637, 10.1128/JVI.72.8.6637-6645.1998 · DOI
  12. Korholz, 2021, One Gene, Many Facets: Multiple Immune Pathway Dysregulation in SOCS1 Haploinsufficiency, Front. Immunol., 12, 10.3389/fimmu.2021.680334 · DOI
  13. Endo, 1997, A new protein containing an SH2 domain that inhibits JAK kinases, Nature, 387, 921, 10.1038/43213 · DOI · Paper page
  14. Naka, 1997, Structure and function of a new STAT-induced STAT inhibitor, Nature, 387, 924, 10.1038/43219 · DOI · Paper page
  15. Starr, 1998, Liver degeneration and lymphoid deficiencies in mice lacking suppressor of cytokine signaling-1, Proc. Natl. Acad. Sci. USA, 95, 14395, 10.1073/pnas.95.24.14395 · DOI
  16. Alexander, 1999, SOCS1 is a critical inhibitor of interferon gamma signaling and prevents the potentially fatal neonatal actions of this cytokine, Cell, 98, 597, 10.1016/S0092-8674(00)80047-1 · DOI · Paper page
  17. Naka, 2001, SOCS-1/SSI-1-deficient NKT cells participate in severe hepatitis through dysregulated cross-talk inhibition of IFN-gamma and IL-4 signaling in vivo, Immunity, 14, 535, 10.1016/S1074-7613(01)00132-7 · DOI
  18. Gruber, 2023, IL4Ralpha and IL17A Blockade Rescue Autoinflammation in SOCS1 Haploinsufficiency, J. Clin. Immunol., 44, 36, 10.1007/s10875-023-01635-z · DOI
  19. Hadjadj, 2020, Early-onset autoimmunity associated with SOCS1 haploinsufficiency, Nat. Commun., 11, 5341, 10.1038/s41467-020-18925-4 · DOI · Paper page
  20. Michniacki, 2022, SOCS1 Haploinsufficiency Presenting as Severe Enthesitis, Bone Marrow Hypocellularity, and Refractory Thrombocytopenia in a Pediatric Patient with Subsequent Response to JAK Inhibition, J. Clin. Immunol., 42, 1766, 10.1007/s10875-022-01346-x · DOI
  21. Lee, 2020, Immune dysregulation and multisystem inflammatory syndrome in children (MIS-C) in individuals with haploinsufficiency of SOCS1, J. Allergy Clin. Immunol., 146, 1194, 10.1016/j.jaci.2020.07.033 · DOI
  22. Thaventhiran, 2020, Whole-genome sequencing of a sporadic primary immunodeficiency cohort, Nature, 583, 90, 10.1038/s41586-020-2265-1 · DOI
  23. Du, 2023, In cis “benign” SOCS1 variants linked to enhanced interferon signaling and autoimmunity, J. Autoimmun., 140, 10.1016/j.jaut.2023.103119 · DOI
  24. Igarashi, 1994, Interferon-gamma induces tyrosine phosphorylation of interferon-gamma receptor and regulated association of protein tyrosine kinases, Jak1 and Jak2, with its receptor, J. Biol. Chem., 269, 14333, 10.1016/S0021-9258(17)36621-8 · DOI
  25. Farrar, 1993, The molecular cell biology of interferon-gamma and its receptor, Annu. Rev. Immunol., 11, 571, 10.1146/annurev.iy.11.040193.003035 · DOI
  26. Sakatsume, 1995, The Jak kinases differentially associate with the alpha and beta (accessory factor) chains of the interferon gamma receptor to form a functional receptor unit capable of activating STAT transcription factors, J. Biol. Chem., 270, 17528, 10.1074/jbc.270.29.17528 · DOI
  27. Greenlund, 1994, Ligand-induced IFN gamma receptor tyrosine phosphorylation couples the receptor to its signal transduction system (p91), EMBO J., 13, 1591, 10.1002/j.1460-2075.1994.tb06422.x · DOI · Paper page
  28. Greenlund, 1995, Stat recruitment by tyrosine-phosphorylated cytokine receptors: an ordered reversible affinity-driven process, Immunity, 2, 677, 10.1016/1074-7613(95)90012-8 · DOI
  29. Shuai, 1994, Interferon activation of the transcription factor Stat91 involves dimerization through SH2-phosphotyrosyl peptide interactions, Cell, 76, 821, 10.1016/0092-8674(94)90357-3 · DOI · Paper page
  30. Schindler, 1992, Interferon-dependent tyrosine phosphorylation of a latent cytoplasmic transcription factor, Science, 257, 809, 10.1126/science.1496401 · DOI · Paper page
  31. Shuai, 1992, Activation of transcription by IFN-gamma: tyrosine phosphorylation of a 91-kD DNA binding protein, Science, 258, 1808, 10.1126/science.1281555 · DOI
  32. Shuai, 1993, A single phosphotyrosine residue of Stat91 required for gene activation by interferon-gamma, Science, 261, 1744, 10.1126/science.7690989 · DOI · Paper page
  33. ten Hoeve, 2002, Identification of a nuclear Stat1 protein tyrosine phosphatase, Mol. Cell Biol., 22, 5662, 10.1128/MCB.22.16.5662-5668.2002 · DOI · Paper page
  34. Varinou, 2003, Phosphorylation of the Stat1 transactivation domain is required for full-fledged IFN-gamma-dependent innate immunity, Immunity, 19, 793, 10.1016/S1074-7613(03)00322-4 · DOI · Paper page
  35. Fenner, 2006, Suppressor of cytokine signaling 1 regulates the immune response to infection by a unique inhibition of type I interferon activity, Nat. Immunol., 7, 33, 10.1038/ni1287 · DOI
  36. Blumer, 2017, SOCS1 is an inducible negative regulator of interferon lambda (IFN-lambda)-induced gene expression in vivo, J. Biol. Chem., 292, 17928, 10.1074/jbc.M117.788877 · DOI
  37. Starr, 1997, A family of cytokine-inducible inhibitors of signalling, Nature, 387, 917, 10.1038/43206 · DOI · Paper page
  38. Zhang, 1999, The conserved SOCS box motif in suppressors of cytokine signaling binds to elongins B and C and may couple bound proteins to proteasomal degradation, Proc. Natl. Acad. Sci. USA, 96, 2071, 10.1073/pnas.96.5.2071 · DOI
  39. Zhang, 2001, The SOCS box of suppressor of cytokine signaling-1 is important for inhibition of cytokine action in vivo, Proc. Natl. Acad. Sci. USA, 98, 13261, 10.1073/pnas.231486498 · DOI
  40. Doggett, 2023, The SOCS1 KIR and SH2 domain are both required for suppression of cytokine signaling in vivo, Cytokine, 165, 10.1016/j.cyto.2023.156167 · DOI
  41. Rusinova, 2013, Interferome v2.0: an updated database of annotated interferon-regulated genes, Nucleic Acids Res., 41, D1040, 10.1093/nar/gks1215 · DOI · Paper page
  42. Peiris, 2010, Host response to influenza virus: protection versus immunopathology, Curr. Opin. Immunol., 22, 475, 10.1016/j.coi.2010.06.003 · DOI
  43. Nicol, 2019, Lack of IFNgamma signaling attenuates spread of influenza A virus in vivo and leads to reduced pathogenesis, Virology, 526, 155, 10.1016/j.virol.2018.10.017 · DOI
  44. Califano, 2018, IFN-gamma increases susceptibility to influenza A infection through suppression of group II innate lymphoid cells, Mucosal Immunol., 11, 209, 10.1038/mi.2017.41 · DOI
  45. Schmit, 2022, Interferon-gamma promotes monocyte-mediated lung injury during influenza infection, Cell Rep., 38, 10.1016/j.celrep.2022.110456 · DOI
  46. Bidgood, 2024, SOCS1 is a critical checkpoint in immune homeostasis, inflammation and tumor immunity, Front. Immunol., 15, 10.3389/fimmu.2024.1419951 · DOI
  47. Miura, 2002, ARAP1: a point of convergence for Arf and Rho signaling, Mol. Cell, 9, 109, 10.1016/S1097-2765(02)00428-8 · DOI
  48. Yoon, 2006, ARAP2 effects on the actin cytoskeleton are dependent on Arf6-specific GTPase-activating-protein activity and binding to RhoA-GTP, J. Cell Sci., 119, 4650, 10.1242/jcs.03237 · DOI
  49. Donaldson, 2003, Multiple roles for Arf6: sorting, structuring, and signaling at the plasma membrane, J. Biol. Chem., 278, 41573, 10.1074/jbc.R300026200 · DOI
  50. Chen, 2014, The Arf6 GTPase-activating proteins ARAP2 and ACAP1 define distinct endosomal compartments that regulate integrin α5β1 traffic, J. Biol. Chem., 289, 30237, 10.1074/jbc.M114.596155 · DOI
  51. Huang, 2011, Temporal dynamics of host molecular responses differentiate symptomatic and asymptomatic influenza a infection, PLoS Genet., 7, 10.1371/journal.pgen.1002234 · DOI
  52. Galani, 2017, Interferon-lambda Mediates Non-redundant Front-Line Antiviral Protection against Influenza Virus Infection without Compromising Host Fitness, Immunity, 46, 875, 10.1016/j.immuni.2017.04.025 · DOI
  53. Garcia-Sastre, 1998, The role of interferon in influenza virus tissue tropism, J. Virol., 72, 8550, 10.1128/JVI.72.11.8550-8558.1998 · DOI
  54. Babon, 2009, The SOCS box encodes a hierarchy of affinities for Cullin5: implications for ubiquitin ligase formation and cytokine signalling suppression, J. Mol. Biol., 387, 162, 10.1016/j.jmb.2009.01.024 · DOI
  55. Williams, 2018, Interaction of suppressor of cytokine signalling 3 with cavin-1 links SOCS3 function and cavin-1 stability, Nat. Commun., 9, 168, 10.1038/s41467-017-02585-y · DOI · Paper page
  56. Linossi, 2021, Discovery of an exosite on the SOCS2-SH2 domain that enhances SH2 binding to phosphorylated ligands, Nat. Commun., 12, 7032, 10.1038/s41467-021-26983-5 · DOI
  57. Huang, 2022, JAK inhibition as a new treatment strategy for patients with COVID-19, Biochem. Pharmacol., 202, 10.1016/j.bcp.2022.115162 · DOI
  58. Dalton, 1993, Multiple defects of immune cell function in mice with disrupted interferon-gamma genes, Science, 259, 1739, 10.1126/science.8456300 · DOI
  59. Delconte, 2016, CIS is a potent checkpoint in NK cell-mediated tumor immunity, Nat. Immunol., 17, 816, 10.1038/ni.3470 · DOI
  60. Nicholson, 1999, Mutational analyses of the SOCS proteins suggest a dual domain requirement but distinct mechanisms for inhibition of LIF and IL-6 signal transduction, EMBO J., 18, 375, 10.1093/emboj/18.2.375 · DOI · Paper page
  61. Brown, 2020, An Improved Protocol for the Production of Lentiviral Vectors, STAR Protoc., 1, 10.1016/j.xpro.2020.100152 · DOI
  62. Gordon, 1991, Use of vanadate as protein-phosphotyrosine phosphatase inhibitor, Methods Enzymol., 201, 477, 10.1016/0076-6879(91)01043-2 · DOI · Paper page
  63. Huyer, 1997, Mechanism of inhibition of protein-tyrosine phosphatases by vanadate and pervanadate, J. Biol. Chem., 272, 843, 10.1074/jbc.272.2.843 · DOI
  64. Wisniewski, 2009, Universal sample preparation method for proteome analysis, Nat. Methods, 6, 359, 10.1038/nmeth.1322 · DOI · Paper page
  65. Cox, 2011, Andromeda: a peptide search engine integrated into the MaxQuant environment, J. Proteome Res., 10, 1794, 10.1021/pr101065j · DOI
  66. Cox, 2008, MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification, Nat. Biotechnol., 26, 1367, 10.1038/nbt.1511 · DOI · Paper page
  67. Keilhauer, 2015, Accurate protein complex retrieval by affinity enrichment mass spectrometry (AE-MS) rather than affinity purification mass spectrometry (AP-MS), Mol. Cell. Proteomics, 14, 120, 10.1074/mcp.M114.041012 · DOI
  68. Perez-Riverol, 2025, The PRIDE database at 20 years: 2025 update, Nucleic Acids Res., 53, D543, 10.1093/nar/gkae1011 · DOI
  69. Tate, 2010, Critical role of airway macrophages in modulating disease severity during influenza virus infection of mice, J. Virol., 84, 7569, 10.1128/JVI.00291-10 · DOI
  70. McCarthy, 2017, Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R, Bioinformatics, 33, 1179, 10.1093/bioinformatics/btw777 · DOI · Paper page
  71. Aran, 2019, Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage, Nat. Immunol., 20, 163, 10.1038/s41590-018-0276-y · DOI · Paper page
  72. Haghverdi, 2018, Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors, Nat. Biotechnol., 36, 421, 10.1038/nbt.4091 · DOI · Paper page
  73. Korotkevich, 2021, Fast gene set enrichment analysis, bioRxiv
  74. Liberzon, 2015, The Molecular Signatures Database (MSigDB) hallmark gene set collection, Cell Syst., 1, 417, 10.1016/j.cels.2015.12.004 · DOI · Paper page

Metadata

Authors
Keating, N., Doggett, K., Bidgood, G. M., Meza Guzman, L. G., Dagley, L. F., Li, K., Williams, B. E., Gabrielyan, A., Alvarado, C., Broomfield, B. J., Duckworth, B. C., Hockings, C., Yousef, J., Leong, E., Morris, R., Kueh, A., Garnham, A. L., Giner, G., Casanova, J.-L., Boisson-Dupuis, S., Babon, J. J., Linossi, E. M., Tate, M. D., Groom, J. R., & Nicholson, S. E.
Affiliations
  • The University of Melbourne (AU)
  • Hôpital Necker-Enfants Malades (FR)
  • University of California, San Francisco (US)
  • Hudson Institute of Medical Research (AU)
Corresponding author
Nicholson, Sandra E.
Venue
Cell Reports
Publisher
Elsevier BV
Published
2025-12
Volume
44
Issue
12
Pages
116667
ISSN
2211-1247 (ISSN-L)
OpenAlex
W4417312873
Cited by
1
References
4
Citations by year
2026: 1
FWCI
0.42
Type
journal article
Language
en
Open access
Locations
  • Cell Reports (publishedVersion, cc-by-nc-nd)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed (publishedVersion)
  • HAL (submittedVersion)
  • Minerva Access (University of Melbourne) (submittedVersion, cc-by-nc-nd)
Funders
  • National Health and Medical Research Council (1121755, 2011761)
  • State Government of Victoria
  • Fulbright Association
  • University of Melbourne (GNT2007812)
Topics
  • Life Sciences › Immunology and Microbiology › Immunology › Cytokine Signaling Pathways and Interactions
  • Life Sciences › Immunology and Microbiology › Immunology › interferon and immune responses
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Tyrosine Phosphatases
Keywords
SOCS1, interferon-gamma signaling, JAK/STAT signaling, tyrosine phosphorylation, negative regulation of cytokine signaling, influenza, inflammation, macrophages, autoimmunity
MeSH terms
Suppressor of Cytokine Signaling 1 Protein, Animals, Humans, Interferon-gamma, Mice, Inbred C57BL, Orthomyxoviridae Infections, Phosphorylation, Protein Binding, Signal Transduction, src Homology Domains, Adaptor Proteins, Signal Transducing, Mice, HEK293 Cells

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