The Gut Microbiome: Connecting Spatial Organization to Function

Cited by (693)

Items 301–400 of 693

  1. Spatial variation of the gut microbiome in response to long-term metformin treatment in high-fat diet-induced type 2 diabetes mouse model of both sexes
    Laila Silamiķele, Rihards Saksis, Ivars Silamiķelis, Patrīcija Paulīne Kotoviča, Monta Brīvība, Ineta Kalniņa, Zane Kalniņa, Dāvids Frīdmanis, Jānis Kloviņš · 2023 · Gut Microbes
  2. Colonoscopy aspiration lavages for mucosal metataxonomic profiling of spondylarthritis-associated gastrointestinal tract alterations
    Ricaurte Alejandro Marquez-Ortíz, Moises Leon, Deisy Abril, Javier Antonio Escobar-Pérez, Cristian Flórez-Sarmiento, Viviana Parra-Izquierdo, Philippe Chalem, Consuelo Romero‐Sánchez · 2023 · Scientific Reports
  3. The Impact of Surgical Bowel Preparation on the Microbiome in Colon and Rectal Surgery
    Lauren Weaver, Alexander M. Troester, Cyrus Jahansouz · 2024 · Antibiotics
  4. The gut microbiome and the brain
    N. A. Rykalo, Lydia Riehl, Michaela Kress · 2024 · Current Opinion in Supportive and Palliative Care
  5. Bacteriophages targeting Enterococcus faecalis enhance the therapeutic efficacy of levodopa in an MPTP-induced Parkinson’s disease mouse model with E. faecalis gut colonization
    Joon Pyo Hong, Sooan Shin, So Hyeon Chung, Myung-chul Song, Jin‐gon Shim, Yoongeun Kim, Bombi Lee, Mijung Yeom, Hi‐Joon Park, Kwang‐Hwan Jung et al. · 2024 · Scientific Reports
  6. Inter-vendor variance of enteric eukaryotic DNA viruses in specific pathogen free C57BL/6N mice
    Torben Sølbeck Rasmussen, Rasmus Riemer Jakobsen, Josué Leonardo Castro-Mejía, Witold Kot, Allan Randrup Thomsen, Finn Kvist Vogensen, Dennis Sandris Nielsen, Axel Kornerup Hansen · 2021 · Research in Veterinary Science
  7. The Effect of Functional Fiber on Microbiota Composition in Different Intestinal Segments of Obese Mice
    Chuanhui Xu, Jianhua Liu, Jianwei Gao, Xiaoyu Wu, Chenbin Cui, Hongkui Wei, Jian Peng, Rong Zheng · 2021 · International Journal of Molecular Sciences
  8. Direct Visualization of Single-Cell Non-Repetitive Genes by in Situ Activation of Collateral Activity of Crispr/Cas12a Inside Cells
    Xuhan Xia, Boheng Ma, Wenhu Zhou, Hao Yang, Changwei Lei, Yi Dong, Jiaqi Zhang, Qiang He, Ruijie Deng · 2022 · Chemical Engineering Journal
  9. Disaggregation as an interaction mechanism among intestinal bacteria
    Deepika Sundarraman, T. Jarrod Smith, Jade Kast, Karen J. Guillemin, R. Parthasarathy · 2022 · Biophysical Journal
  10. RNA Purity, Real-Time PCR Sensitivity, and Colon Segment Influence mRNA Relative Expression in Murine Dextran Sodium Sulfate Experimental Colitis
    Bernardo Oldak, Mayra Yolanda Cruz-Rivera, Ana Flisser, Fela Mendlovic · 2018 · Journal of Biomolecular Techniques JBT
  11. Metabolic phenotyping of the human microbiome
    Wiley Barton, Órla O’Sullivan, Paul D. Cotter · 2019 · F1000Research
  12. Enteromorpha prolifera Diet Drives Intestinal Microbiome Composition in Siganus oramin
    Yan Xu, Jin Li, Xuefeng Han, Zhibiao Zhang, Mingqi Zhong, Zhong Hu · 2020 · Current Microbiology
  13. Structured environments foster competitor coexistence by manipulating interspecies interfaces
    Tristan S. Ursell · 2021 · PLoS Computational Biology
  14. Anatomy promotes neutral coexistence of strains in the human skin microbiome
    Arolyn Conwill, Anne C. Kuan, Ravalika Damerla, Alexandra J. Poret, Jacob S. Baker, Arielle D. Tripp, Eric J. Alm, Tami D. Lieberman · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  15. Marked Response of Rat Ileal and Colonic Microbiota After the Establishment of Alzheimer’s Disease Model With Bilateral Intraventricular Injection of Aβ (1-42)
    Xu, Qing, Wen, Lingmiao, Wei, Guihua, Zhao, Xiaoqin, Liu, Yanjun, Xiong, Wei, Zhang, Tinglan, Fan, Yuqing, Chen, Chunlan, Xiang, Chunxiao et al. · 2022 · Frontiers in Microbiology
  16. Innovative engineering approaches to model host-microbiome interactions in vitro
    Karen M Mancera Azamar, Samanvitha Deepthi Sudi, Zahra Mohammadalizadeh, Carleigh Coffin, Ivana Parker, Ana Maria Porras · 2025 · Advanced Drug Delivery Reviews
  17. Gut microbiome and bile acid metabolism in liver disease: Mechanisms, clinical implications, and therapeutic opportunities
    Huiping Zhou, Yi Huang, Chen Chen, Meiyi Song, Phillip B. Hylemon · 2026 · Pharmacological Reviews
  18. Colorectal microbiota after removal of colorectal cancer
    Peter Cronin, Clodagh L. Murphy, Maurice Barrett, Tarini Shankar Ghosh, Paola Pellanda, Eibhlís M. O’Connor, Syed Akbar Zulquernain, Shane Kileen, Morgan McCourt, Emmet J. Andrews et al. · 2022 · NAR Cancer
  19. Microbiota-Derived Extracellular Vesicles Promote Immunity and Intestinal Maturation in Suckling Rats
    Sergio Martínez-Ruiz, Laura Sáez‐Fuertes, Sergi Casanova-Crespo, Maria Jose Rodríguez-Lagunas, Francisco José Pérez-Cano, Josefa Badı́a, Laura Baldomà · 2023 · Nutrients
  20. Emergent antibiotic persistence in a spatially structured synthetic microbial mutualism
    Xianyi Xiong, Hans G. Othmer, William R. Harcombe · 2024 · The ISME Journal
  21. Altered microbiome and metabolome profiling in fearful companion dogs: An exploratory study
    Luigi Sacchettino, Michele Costanzo, Iolanda Veneruso, Valeria D’Argenio, Maria Mayer, Luigi Avallone, Francesco Napolitano, Danila d’Angelo · 2025 · PLoS ONE
  22. Insights Into the Oral Microbiome and Barrett's Esophagus Early Detection: A Narrative Review
    Zhenzhen Zhang, Grace Curran, Duygu Altinok Dindar, Ying Xing Wu, Hui Wu, Thomas J. Sharpton, Lianmei Zhao, David A. Lieberman, Fouad A. Otaki · 2021 · Clinical and Translational Gastroenterology
  23. Engineering Diagnostic and Therapeutic Gut Bacteria
    Brian P. Landry, Jeffrey J. Tabor · 2018 · ASM Press eBooks
  24. A Distinct Contractile Injection System Gene Cluster Found in a Majority of Healthy Adult Human Microbiomes
    María Isabel Rojas, Giselle S. Cavalcanti, Katelyn McNair, Sean Benler, Amanda T. Alker, Ana Georgina Cobián Güemes, Melissa Giluso, Kyle Levi, Forest L. Rohwer, Barbara Bailey et al. · 2020 · mSystems
  25. Updating changes in human gut microbial communities associated with Clostridioides difficile infection
    Giovanny Herrera, Daniel Paredes‐Sabja, Manuel Alfonso Patarroyo, Juan David Ramírez, Marina Muñoz · 2021 · Gut Microbes
  26. Portal bile acid composition and microbiota along the murine intestinal tract exhibit sex differences in physiology
    François Reichardt, Lauren N. Lucas, Lydia Okyere, Jim Choi, Daniel Amador‐Noguez, Christopher A. Gaulke, Sayeepriyadarshini Anakk · 2025 · Gut Microbes
  27. Functional archetypes in the human gut microbiome reveal metabolic diversity, stability, and influence disease-associated signatures
    Mohamed Meawad, Dalwinder Singh, Alice Deng, Rohan Sonthalia, E. Cai, Vanessa Dumeaux · 2025 · Microbiome
  28. Ecology of the gut microbiota and colonization resistance: mechanisms and therapeutic implications
    Lanfan Liang, Ziyi Yang, Xiangsheng Fu · 2025 · FEMS Microbiology Ecology
  29. An impedance-based chemiresistor for the real-time, simultaneous detection of gut microbiota-generated short-chain fatty acids
    Adel Yavarinasab, Stéphane Flibotte, Sijie Liu, Carolina Tropini · 2023 · Sensors and Actuators B Chemical
  30. Spatiotemporal dynamics during niche remodeling by super-colonizing microbiota in the mammalian gut
    Guillaume Urtecho, Thomas U. Moody, Yiming Huang, Ravi U. Sheth, Miles Richardson, Hélène C. Descamps, Andrew Kaufman, Opeyemi Lekan, Zetian Zhang, Florencia Velez‐Cortes et al. · 2024 · Cell Systems
  31. Spatiotemporally resolved tools for analyzing gut microbiota
    Xianglin Zhu, Kaixiang Zhang, Xucong Teng, Xuhan Xia, Ruijie Deng, Jinghong Li · 2023 · Chem
  32. Genetic hypogonadal mouse model reveals niche-specific influence of reproductive axis and sex on intestinal microbial communities
    Laura Sisk-Hackworth, Jada Brown, Lillian Sau, Andrew A. Levine, Lai Ying Ivy Tam, Aishwarya Ramesh, Reeya S. Shah, Evelyn T. Kelley-Thackray, Sophia Wang, Anita Nguyen et al. · 2023 · Biology of Sex Differences
  33. Human Gut Metagenomes Encode Diverse GH156 Sialidases
    Mann, Evan, Shekarriz, Shahrokh, Surette, Michael G. · 2022 · Applied and Environmental Microbiology
  34. Spatial profiles of the bacterial microbiota throughout the gastrointestinal tract of dairy goats
    Qingyong Hu, Jun Luo, Fei Cheng, Ping Wang, Ping Gong, Xuefeng Lv, Xinpei Wang, Min Yang, Pengbo Wei · 2024 · Applied Microbiology and Biotechnology
  35. Gut commensals make choline too
    Aaron Wright · 2018 · Nature Microbiology
  36. The gut microbiome and allergic rhinitis; refocusing on the role of probiotics as a treatment option
    Jianghua Li, Fang Fang, Mei Mei, Dongmei Wu · 2022 · European Archives of Oto-Rhino-Laryngology
  37. Characteristics of intestinal microbiota in C57BL/6 mice with non-alcoholic fatty liver induced by high-fat diet
    Guangwen Yan, Shuaibing Li, Yuhang Wen, Yadan Luo, Jingrong Huang, Baoting Chen, Shuya Lv, Lang Chen, Lvqin He, Manli He et al. · 2022 · Frontiers in Microbiology
  38. Maturation state of colonization sites promotes symbiotic resiliency in the Euprymna scolopes-Vibrio fischeri partnership
    Tara Essock‐Burns, Susannah Lawhorn, Leo Wu, Sawyer McClosky, Silvia Moriano‐Gutierrez, Edward G. Ruby, Margaret McFall‐Ngai · 2023 · Microbiome
  39. Gut Microbiota Resilience Mechanisms Against Pathogen Infection and its Role in Inflammatory Bowel Disease
    Marcella Cipelli, Eloísa Martins da Silva, Niels Olsen Saraiva Câmara · 2023 · Current Clinical Microbiology Reports
  40. Interactions of host‐associated multispecies bacterial communities
    Heidi Goodrich‐Blair · 2021 · Periodontology 2000
  41. Complex Oligosaccharide Utilization Pathways in Lactobacillus
    Manuel Zúñiga, Marı́a J. Yebra, Vicente Monedero · 2018 · Caister Academic Press eBooks
  42. Clinically adaptable polymer enables simultaneous spatial analysis of colonic tissues and biofilms
    Mary Catherine Macedonia, Julia L. Drewes, Nicholas O. Markham, Alan J. Simmons, Joseph T. Roland, Paige N. Vega, Cherie’ R. Scurrah, Robert J. Coffey, Martha J. Shrubsole, Cynthia L. Sears et al. · 2020 · npj Biofilms and Microbiomes
  43. In situ single-cell activities of microbial populations revealed by spatial transcriptomics
    Daniel Dar, Nina Dar, Long Cai, Dianne K. Newman · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  44. Hydrogel-based experimental models of the gastrointestinal tract
    Mink Sieders, Pieter Candry, Sahar El Aidy · 2025 · Microbiome
  45. Recent progress in analyzing the spatial structure of the human microbiome: Distinguishing biogeography and architecture in the oral and gut communities
    Emmanuel E. Adade, Khalid Al Lakhen, Alex A. Lemus, Alex M. Valm · 2021 · Current Opinion in Endocrine and Metabolic Research
  46. The Relationship between Complements and Age-Related Macular Degeneration and Its Pathogenesis
    Liyuan Chu, Chaoran Bi, Caiming Wang, Hongyan Zhou · 2024 · Journal of Ophthalmology
  47. Archaea influence composition of endoscopically visible ileocolonic biofilms
    Elisabeth Orgler, Maximilian Baumgartner, Stefanie Duller, Christina Kumptisch, Bela Hausmann, Doris Moser, Vineeta Khare, Michaela Lang, Thomas Köcher, Adrian P. Frick et al. · 2024 · Gut Microbes
  48. Multiple-species biofilms as structuralized microbial communities for modulating microbiota homeostasis in human
    Anmin Ren, Yachun Zhou, Zhenbo Xu, Tianyuan Jia, Liang Yang · 2024 · Current Medicine
  49. Biogeographical distribution of gut microbiome composition and function is partially recapitulated by fecal transplantation into germ-free mice
    Julianne Ching Yang, Venu Lagishetty, Ezinne Aja, Nerea Arias-Jayo, Candace Chang, Megan C. Hauer, William R. Katzka, Yi Kai Zhou, Farzaneh Sedighian, Carolina F. Koletic et al. · 2024 · The ISME Journal
  50. Summary of Best Evidence for the Dietary Management in Patients with High-Output Ileostomy
    Ying Wang, Huanwei Peng, Cui Cui, Quan Zou, Mudi Yang · 2025 · Journal of Multidisciplinary Healthcare
  51. A Sequential Release Micro‐nano System for Colitis Therapy via Gut Microbiota and Immune Regulation
    Dongdong Zhu, Xiaocao Ma, Jingguo Wang, Tiantian Chen, Jiahui Yang, Yan Liu, Zhun Lin, Minhao Wu, Ye Hu, Yuanqing Zhang · 2025 · Angewandte Chemie International Edition
  52. Intraspecies warfare restricts strain coexistence in human skin microbiomes
    Christopher P. Mancuso, Jacob S. Baker, Evan B. Qu, Arielle D. Tripp, Ishaq O. Balogun, Tami D. Lieberman · 2025 · Nature Microbiology
  53. Comparison of gastrointestinal microbiota in golden snub-nosed monkey (Rhinopithecus roxellanae), green monkey (Chlorocebus aethiops sabaeus), and ring-tailed lemur (Lemur catta) by high throughput sequencing
    Yan Zeng, Yang Pu, Lili Niu, Junliang Deng, D. Zeng, Katherine Ryan Amato, Yaben Li, Yifan Zhou, Yu Lin, Junhan Wang et al. · 2021 · Global Ecology and Conservation
  54. Effect of daily co-exposure to inulin and chlorpyrifos on selected microbiota endpoints in the SHIME® model
    Claire Joly Condette, Narimane Djekkoun, Julie Reygner, Flore Dépeint, Stéphane Delanaud, Larbi Rhazi, Véronique Bach, Hafida Khorsi‐Cauet · 2022 · Environmental Pollution
  55. Actively replicating gut bacteria identified by 5-ethynyl-2’-deoxyuridine (EdU) click chemistry and cell sorting
    Eve T. Beauchemin, Claire Hunter, Corinne F. Maurice · 2023 · Gut Microbes
  56. Microbial Interactions with the Intestinal Epithelium and Beyond: Focusing on Immune Cell Maturation and Homeostasis
    Bhanu Priya Ganesh, Robert Fultz, Sriram Ayyaswamy, James A. Versalovic · 2018 · Current Pathobiology Reports
  57. Dietary Short Chain Fatty Acids: How the Gut Microbiota Fight Against Autoimmune and Inflammatory Diseases
    Keiran H McLeod, James L. Richards, Yu Anne Yap, Eliana Mariño · 2019 · Elsevier eBooks
  58. Niche formation and metabolic interactions result in stable diversity in a spatially structured cyanobacterial community
    Sarah J. N. Duxbury, Sébastien Raguideau, Kelsey Cremin, Jerko Rosko, Mary Coates, Kieran Randall, Jing Chen, Christopher Quince, Orkun S. Soyer · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  59. A taste of wilderness: supplementary feeding of red deer (Cervus elaphus) increases individual bacterial microbiota diversity but lowers abundance of important gut symbionts
    Luis Víquez‐R, Maik Henrich, Vanessa Riegel, Marvin Bader, Kerstin Wilhelm, Marco Heurich, Simone Sommer · 2024 · Animal Microbiome
  60. Quantifying the intra- and inter-species community interactions in microbiomes by dynamic covariance mapping
    Melis Gencel, Gisela Marrero Cofino, Cang Hui, Zahra Sahaf, Louis Gauthier, Chloé Matta, David Gagné-Leroux, Derek K. L. Tsang, Dana J. Philpott, Sheela Ramathan et al. · 2025 · Nature Communications
  61. Small intestinal bacterial overgrowth in children: An expert review by the ESPGHAN Gastroenterology Committee
    Maria Giovanna Puoti, Amit Assa, Marc Alexander Benninga, Ilse Julia Broekaert, Jernej Dolinšek, Matjaž Homan, Javier Martín‐deCarpi, Emmanuel Mas, Erasmo Miele, Zrinjka Mišak et al. · 2025 · Journal of Pediatric Gastroenterology and Nutrition
  62. 3D bioprinted human-scale intestine models for physiological and microbial insights through fluid-driven heterogeneity
    Ziqi Gao, Huilong Du, Seungju Michael Yu, Qi Li, Rui-Qi Shi, Zengliang Jiang, Huayong Yang, Luqi Shen, Hongzhao Zhou · 2025 · Science Advances
  63. Self-assembled aggregations in Coptidis Rhizoma decoction dynamically regulate intestinal tissue permeability through Peyer's patch-associated immunity
    Qingqing Zhang, Ye Yang, Rong-rong Ren, Qingqing Chen, Jing-jing Wu, Yuyu Zheng, Xiaohui Hou, Yufeng Zhang, Ming-song Xue, Dengke Yin · 2021 · Chinese Herbal Medicines
  64. Scientometric analysis of kidney disease and gut microbiota from 2001 to 2020 based on Web of Science
    Ran Zhang, Yanyan Li, Zhongbiao Nie, Xue-Qin Zhang, Yanmiao Ma, Yonghui Wang · 2022 · Medicine
  65. When digestive physiology doesn't match “diet”: Lumpenus sagitta (Stichaeidae) is an “omnivore” with a carnivorous gut
    Daniel R. Rankins, Michelle Joni Herrera, Michelle P. Christensen, Alisa Chen, Newton Z. Hood, Joseph Heras, Donovan P. German · 2023 · Comparative Biochemistry and Physiology Part A Molecular & Integrative Physiology
  66. Molecular techniques and their limitations shape our view of the holobiont
    Ira Cooke, Oliver Mead, Casey Whalen, Chloë Boote, Aurélie Moya, Hua Ying, Steven J. Robbins, Jan M. Strugnell, Aaron E. Darling, David John Miller et al. · 2019 · Zoology
  67. Microbiome Structure and Function: A New Framework for Interpreting Data
    Gregor P. Greslehner · 2020 · BioEssays
  68. Inflammatory disorders of the stomach
    Won‐Tak Choi, Gregory Yves Lauwers, Tomáš Slavík · 2024 · Wiley eBooks
  69. A multi-omics technology to the study of lactic acid bacteria responses to environmental stress: the past, current and future trends
    Yaqi Liu, Jingxian Sun, Xiaowen Liu, Mingpeng Zheng, Wen Ma, Gang Jin · 2024 · Food Science and Human Wellness
  70. Microbiota-associated mechanisms in colorectal cancer
    Adriana González, Asier Fullaondo, Adrián Odriozola · 2024 · Advances in genetics
  71. Investigating regional-specific gut microbial distribution: an uncharted territory in disease therapeutics
    Junliang Kuang, Xiaojiao Zheng, Wei Ping Jia · 2024 · Protein & Cell
  72. Spatial variations in the microbiota: comparative analysis of microbial composition and predicted functions across different intestinal segments and feces in donkeys
    Yanwei Wang, Tong Hu, Kaixuan Liang, Shinuo Li, Qiyue Zhang, Wenqiang Li, Honglei Qu, Boying Dong, Haihua Zhang, Qiugang Ma et al. · 2025 · Frontiers in Microbiology
  73. Topology of gut Microbiota Network and Guild-Based Analysis in Chinese Adults
    Jiongxing Fu, Danxia Yu, Wei Zheng, Yu Jiang, Lei Wang, Hui Cai, Qinghua Xia, Xiao‐Ou Shu, Wanghong Xu · 2025 · Phenomics
  74. Quantifying compositional variability in microbial communities with FAVA
    Maike L. Morrison, Katherine S. Xue, Noah A. Rosenberg · 2025 · Proceedings of the National Academy of Sciences
  75. Working together: gut microbe-microbe interactions shape host inflammation
    Ally Lawing, Rachel M. Bleich · 2025 · Infection and Immunity
  76. Specificities of chemosensory receptors in the human gut microbiota
    Wenhao Xu, Ekaterina Jalomo-Khayrova, Vadim M. Gumerov, Patricia A. Ross, Tania S. Köbel, Daniel Schindler, Gert Bange, Igor B. Zhulin, Victor Sourjik · 2025 · Proceedings of the National Academy of Sciences
  77. Biorecycling of polyethylene (PE): an integrated effort in pretreatment, degradation, and upcycling
    Umer Abid, Julie Gibbons, Jiansong Qin, Dongming Xie · 2025 · Frontiers in Bioengineering and Biotechnology
  78. Specific gastrointestinal microbiota profiles in Chinese Tan sheep are associated with lauric acid content in muscle
    Zhen LI, Ran Cui, Yubei Wang, Ya-Biao Luo, Peng-Xiang Xue, Qiguo Tang, Meiying Fang · 2023 · BMC Microbiology
  79. Insights into host-microbe interaction: What can we do for the swine industry?
    Lijuan Fan, Bingnan Liu, Ziyi Han, Wenkai Ren · 2020 · Animal nutrition
  80. Visualization of Gut Microbiota-host Interactions via Fluorescence In Situ Hybridization, Lectin Staining, and Imaging
    Katharine M. Ng, Carolina Tropini · 2021 · Journal of Visualized Experiments
  81. Elucidation of Metabolic and Disposition Pathways for Maribavir in Nonhuman Primates through Mass Balance and Semi–Physiologically Based Modeling Approaches
    Kefeng Sun, Devin F. Welty · 2021 · Drug Metabolism and Disposition
  82. Directional Gaussian Mixture Models of the Gut Microbiome Elucidate Microbial Spatial Structure
    Amey P. Pasarkar, Tyler A. Joseph, Itsik Pe’er · 2021 · mSystems
  83. Analytical insights, modulation and compositional dynamics of the feline gut microbiota: a review
    Yuejun Shi, Guiqing Peng, Ashenafi Assefa Gebremariam, Muhammad Muazzam Iqbal, Hakimeh Baghaei Daemi, M. Ali Khan, Rizwan Ullah, Donghan Wang · 2024 · Animal Diseases
  84. Coarse-graining bacterial diffusion in disordered media to surface states
    Henry H. Mattingly · 2025 · Proceedings of the National Academy of Sciences
  85. Electroactive ecosystem insights from corrosion microbiomes inform gut microbiome modulation
    Liam M Jones, Sahar El Aidy · 2025 · The ISME Journal
  86. Autologous fecal microbiota capsules are safe and potentially preserve beta-cell function in individuals with type 1 diabetes
    Pleun de Groen, Coco M. Fuhri Snethlage, Koen Wortelboer, Sevilay Tokgöz, Mark Davids, Xanthe Verdoes, Florine H.M. Westerbeke, Rick I. Meijer, Martin Gotthardt, Willem M. de Vos et al. · 2025 · Gut Microbes
  87. Comparison of Different Sites of Microbiota Shows Increased Pseudomonas Species in the Gut Mucosa in Inflammatory Bowel Disease
    David Schult, Christina Gassner, Niklas Thur, Chiara Hennig, Lisa Fricke, Lucia Liotta, Simon Weidlich, Monica Steffi Matchado, Bärbel Stecher, Leona Arps et al. · 2025 · Inflammatory Bowel Diseases
  88. Gut-Microbiome Interactions: Characterization, Therapeutic Implications and Machine Learning
    Selina Mawunyo Ayivi-Tosuh, Aboagye Kwarteng Dofuor, Jennifer Afua Afrifa Yamoah, Blessing Kwabena Gayi, Albert Fynn Aiduenu, Angelina Akomea, Susanna Awinsongya Anovunga, William Ekloh, Laud Anthony Basing · 2026 · Sage Open Pathology
  89. Microbiome-produced nicotinic acid controls colon regional identity and injury susceptibility
    Jérémie Rispal, Jasmine R. Garcia, Brisa Palikuqi, Manasa Vegesna, Dedeepya Vaka, Seungwoo Kang, Coralie Trentesaux, Juan Du, Nicola R Realini, Paige N. Vega et al. · 2026 · Cell
  90. Specific Localization and Quantification of the Oligo‐Mouse‐Microbiota (OMM12) by Fluorescence In Situ Hybridization (FISH)
    Sandrine Brugiroux, David Berry, Diana Ring, Nicolas Barnich, Holger Daims, Bärbel Stecher · 2022 · Current Protocols
  91. Unveiling nanotubes-mediated communication: Enterococcus faecalis countering Salmonella ser. Typhi - In vitro and In vivo insights
    Seenivasan Boopathi, P. Snega Priya, D. Kesavan, Ramu Meenatchi, Raghul Murugan, Gokul Sudhakaran, Bader O. Almutairi, Selvaraj Arokiyaraj, Jesu Arockiaraj · 2023 · Microbial Pathogenesis
  92. Decoding gut microbiota by imaging analysis of fecal samples
    Chikara Furusawa, Kumi Tanabe, Chiharu Ishii, Noriko Kagata, Masaru Tomita, Shinji Fukuda · 2021 · iScience
  93. The Future Potential of Biosensors to Investigate the Gut-Brain Axis
    Jiefei Wang, W. Seth Childers · 2022 · Frontiers in Bioengineering and Biotechnology
  94. Antibiotic Conditioning Shapes Pseudosterile Mouse Models by Deleting Colonic Microbes Rather than Small Intestinal Microbes
    Qingxue Chen, Ma Xinming, Zhishuang Xing, Xin Zhao, Hang Zu, Zengwang Guo, Bailiang Li · 2023 · Microbiology Spectrum
  95. Development of Centella asiatica beverages with potential antioxidant and prebiotic activity for maintaining intestinal health
    Esha Bala, Sanjukta Patra, Siddhartha Singha · 2023 · Food Bioscience
  96. The niche-specialist and age-related oral microbial ecosystem: crosstalk with host immune cells in homeostasis
    Dongjia Lin, Qian‐Nan Hu, Lisa Y. Yang, Xian Zeng, Yiwei Xiao, Dikan Wang, Wenxiao Dai, Huanzi Lu, Juan Fang, Zhonghui Tang et al. · 2022 · Microbial Genomics
  97. Anti-cancer Activity of Human Gastrointestinal Bacteria
    Sameer Quazi · 2021 · Preprints.org
  98. Microbiome in Colonic Carcinogenesis
    Jun Sun, Yinglin Xia · 2023 · Comprehensive physiology
  99. ELOVL5 and VLDLR synergistically affect n-3 PUFA deposition in eggs of different chicken breeds
    Caiyun Jiang, Yuanhang Shi, Xuefeng Shi, Jin Yan, Xuan Lin, Longyu Zhuang, Junying Li, Guiyun Xu, Jiangxia Zheng · 2024 · Poultry Science
  100. Organ structure and bacterial microbiogeography in a reproductive organ of the Hawaiian bobtail squid reveal dimensions of a defensive symbiosis
    Derrick L. Kamp, Allison H. Kerwin, Sarah J. McAnulty, Spencer V. Nyholm · 2025 · Applied and Environmental Microbiology