Nucleotide excision repair in chromatin and the right of entry
Abstract
DNA is packaged with histones and other accessory proteins into chromatin in eukaryotic cells. It is well established that the assembly of DNA into chromatin affects induction of DNA damage as well as repair of the damage. How the DNA repair machinery detects a lesion and 'fixes it' in chromatin has been an intriguing question since the dawn of understanding DNA packaging in chromatin. Direct recognition/binding by damaged DNA binding proteins is one obvious tactic to detect a lesion. Rearrangement of chromatin structure during DNA repair was reported more than two decades ago. This early observation suggests that unfolding of chromatin structure may be required to facilitate DNA repair after lesions are detected. Cells can also exploit DNA processing events to assist DNA repair. Transcription coupled repair (TCR) is such an example. During TCR, an RNA polymerase blocked by a lesion, may act as a signal to recruit DNA repair machinery. Possible roles of histone modification enzymes, ATP-dependent chromatin remodeling complexes and chromatin assembly factors in DNA repair are discussed.
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Repair of damage both in GG-NER and TC-NER requires chromatin remodeling for enhanced access of pathway factors to existing damage.
“Repair of damage both in GG-NER and TC-NER requires chromatin remodeling for the enhanced access of pathway factors to existing damage.”
From Focus on UV-Induced DNA Damage and Repair—Disease Relevance and Protective Strategies (2020) · cites this paper as [108]
The NER pathway in eukaryotes is tightly regulated by post-translational modifications and chromatin dynamics.
“Moreover the NER pathway in eukaryotes is tightly regulated by post-translational modifications and chromatin dynamics reviewed in [89,106,107,108,109].”
From Focus on UV-Induced DNA Damage and Repair—Disease Relevance and Protective Strategies (2020) · cites this paper as [108]
Cites
Crystal structure of the nucleosome core particle at 2.8 Å resolution
Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F., & Richmond, T. J. (1997) · Nature · doi:10.1038/38444 · Cited by 9,466 · see citing works
Genome maintenance mechanisms for preventing cancer
Hoeijmakers, J. H. J. (2001) · Nature · doi:10.1038/35077232 · Cited by 3,939 · see citing works
Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions
D’Amours, D., Desnoyers, S., D’Silva, I., & Poirier, G. G. (1999) · Biochemical Journal · doi:10.1042/bj3420249 · Cited by 1,819 · see citing works
Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9Å Resolution
Davey, C. A., Sargent, D. F., Luger, K., Mäder, A. W., & Richmond, T. J. (2002) · Journal of Molecular Biology · doi:10.1016/s0022-2836(02)00386-8 · Cited by 1,490 · see citing works
Cooperation between Complexes that Regulate Chromatin Structure and Transcription
Narlikar, G. J., Fan, H.-Y., & Kingston, R. E. (2002) · Cell · doi:10.1016/s0092-8674(02)00654-2 · Cited by 1,486 · see citing works
MELLON, I. (1987) · Cell · doi:10.1016/0092-8674(87)90151-6 · Cited by 1,228 · see citing works
Sugasawa, K., Ng, J. M. Y., Masutani, C., Iwai, S., van der Spek, P. J., Eker, A. P. M., Hanaoka, F., Bootsma, D., & Hoeijmakers, J. H. J. (1998) · Molecular Cell · doi:10.1016/s1097-2765(00)80132-x · Cited by 899 · see citing works
A chromatin remodelling complex involved in transcription and DNA processing
Shen, X., Mizuguchi, G., Hamiche, A., & Wu, C. (2000) · Nature · doi:10.1038/35020123 · Cited by 807 · see citing works
Sequential Assembly of the Nucleotide Excision Repair Factors In Vivo
Volker, M., Moné, M. J., Karmakar, P., van Hoffen, A., Schul, W., Vermeulen, W., Hoeijmakers, J. H. J., DRIEL, R. V., van Zeeland, A. A., & Mullenders, L. H. F. (2001) · Molecular Cell · doi:10.1016/s1097-2765(01)00281-7 · Cited by 782 · see citing works
Preparation of nucleosome core particle from recombinant histones
Luger, K., Rechsteiner, T. J., & Richmond, T. J. (1999) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(99)04003-3 · Cited by 779 · see citing works
Khorasanizadeh, S. (2004) · Cell · doi:10.1016/s0092-8674(04)00044-3 · Cited by 672 · see citing works
Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions
D’Amours, D., Desnoyers, S., D’Silva, I., & Poirier, G. G. (1999) · Biochemical Journal · doi:10.1042/0264-6021:3420249 · Cited by 600 · see citing works
Conformational Dynamics of the Chromatin Fiber in Solution: Determinants, Mechanisms, and Functions
Hansen, J. C. (2002) · Annual Review of Biophysics and Biomolecular Structure · doi:10.1146/annurev.biophys.31.101101.140858 · Cited by 556 · see citing works
Poly(ADP-ribose) Binds to Specific Domains in DNA Damage Checkpoint Proteins
Pleschke, J. M., Kleczkowska, H. E., Strohm, M., & Althaus, F. R. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m006520200 · Cited by 536 · see citing works
Poly(ADP-ribosyl)ation of polynucleosomes causes relaxation of chromatin structure.
Poirier, G. G., de MURCIA, G., Jongstra‐Bilen, J., Niedergang, C., & Mandel, P. (1982) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.79.11.3423 · Cited by 516 · see citing works
Martinez, E., Palhan, V. B., Tjernberg, A., Lymar, E. S., Gamper, A. M., Kundu, T. K., Chait, B. T., & Roeder, R. G. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.20.6782-6795.2001 · Cited by 383 · see citing works
Nucleotide excision repair in yeast
Prakash, S., & Prakash, L. (2000) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/s0027-5107(00)00037-3 · Cited by 371 · see citing works
Citterio, E., van den Boom, V., Schnitzler, G. R., Kanaar, R., Bonte, E. J., Kingston, R. E., Hoeijmakers, J. H. J., & Vermeulen, W. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.20.7643-7653.2000 · Cited by 371 · see citing works
Reardon, J. T., & Sancar, A. (2005) · Progress in Nucleic Acid Research and Molecular Biology · doi:10.1016/s0079-6603(04)79004-2 · Cited by 350 · see citing works
Structure and dynamic behavior of nucleosomes.
Luger, K. (2003) · Current Opinion in Genetics and Development · doi:10.1016/s0959-437x(03)00026-1 · Cited by 344 · see citing works
Chromatin Assembly Coupled to DNA Repair: A New Role for Chromatin Assembly Factor I
Gaillard, P.-H. L., Martini, E. M.-D., Kaufman, P. D., Stillman, B., Moustacchi, E., & Almouzni, G. (1996) · Cell · doi:10.1016/s0092-8674(00)80164-6 · Cited by 343 · see citing works
A CAF-1–PCNA-Mediated Chromatin Assembly Pathway Triggered by Sensing DNA Damage
Moggs, J. G., Grandi, P., Quivy, J., Jónsson, Z. O., Hübscher, U., Becker, P. B., & Almouzni, G. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.4.1206-1218.2000 · Cited by 337 · see citing works
Ausió, J., Dong, F., & Holde, K. E. V. (1989) · Journal of Molecular Biology · doi:10.1016/0022-2836(89)90493-2 · Cited by 334 · see citing works
Recycling of the general transcription factors during RNA polymerase II transcription.Preprint
Zawel, L. S., Kumar, K. P., & Reinberg, D. (1995) · Genes & Development · doi:10.1101/gad.9.12.1479 · Cited by 320 · see citing works
Cockayne syndrome group B protein enhances elongation by RNA polymerase II
Selby, C. P., & Sancar, A. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.21.11205 · Cited by 307 · see citing works
Human Asf1 and CAF‐1 interact and synergize in a repair‐coupled nucleosome assembly pathway
Mello, J. A., Silljé, H. H. W., Roche, D. M. J., Kirschner, D. B., Nigg, E. A., & Almouzni, G. (2002) · EMBO Reports · doi:10.1093/embo-reports/kvf068 · Cited by 305 · see citing works
Chávez, S., Beilharz, T., Rondón, A. G., Erdjument‐Bromage, H., Tempst, P., Svejstrup, J. Q., Lithgow, T. J., & Aguilera, A. (2000) · The EMBO Journal · doi:10.1093/emboj/19.21.5824 · Cited by 300 · see citing works
Cellular machineries for chromosomal DNA repairPreprint
Peterson, C. L., & Côté, J. (2004) · Genes & Development · doi:10.1101/gad.1182704 · Cited by 287 · see citing works
Selby, C. P., & Sancar, A. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.3.1885 · Cited by 267 · see citing works
In vivo recruitment of XPC to UV-induced cyclobutane pyrimidine dimers by the DDB2 gene product
Fitch, M. E., Nakajima, S., Yasui, A., & Ford, J. M. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m307254200 · Cited by 260 · see citing works
van Gool, A. J., Citterio, E., Rademakers, S., Os, R. I. V. R.-V., Vermeulen, W., Constantinou, A., Egly, J., Bootsma, D., & Hoeijmakers, J. H. J. (1997) · The EMBO Journal · doi:10.1093/emboj/16.19.5955 · Cited by 257 · see citing works
RAD26, the functional S. cerevisiae homolog of the Cockayne syndrome B gene ERCC6.
van Gool, A. J., Verhage, R., Swagemakers, S. M., van de Putte, P., Brouwer, J., Troelstra, C., Bootsma, D., & Hoeijmakers, J. H. (1994) · The EMBO Journal · doi:10.1002/j.1460-2075.1994.tb06871.x · Cited by 246 · see citing works
RELATIONSHIPS BETWEEN DNA REPAIR AND TRANSCRIPTION
Friedberg, E. C. (1996) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.65.070196.000311 · Cited by 231 · see citing works
Site-specific DNA repair at the nucleosome level in a yeast minichromosome
Smerdon, M. J., & Thoma, F. (1990) · Cell · doi:10.1016/0092-8674(90)90479-x · Cited by 221 · see citing works
Self-citationCSB Is a Component of RNA Pol I Transcription
Bradsher, J., Auriol, J., Proietti‐De‐Santis, L., Iben, S., Vonesch, J., Grummt, I., & Egly, J. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00678-0 · Cited by 217 · see citing works
Nucleosome rearrangement in human chromatin during UV-induced DNA- reapir synthesis.
Smerdon, M. J., & Lieberman, M. W. (1978) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.75.9.4238 · Cited by 210 · see citing works
Self-citationBrand, M., Moggs, J. G., Oulad‐Abdelghani, M., Lejeune, F., Dilworth, F. J., Stévenin, J., Almouzni, G., & Tora, L. (2001) · The EMBO Journal · doi:10.1093/emboj/20.12.3187 · Cited by 209 · see citing works
Green, C., & Almouzni, G. (2002) · EMBO Reports · doi:10.1093/embo-reports/kvf005 · Cited by 207 · see citing works
Modulation of chromatin superstructure induced by poly(ADP-ribose) synthesis and degradation.
de MURCIA, G., Huletsky, A., Lamarre, D., Gaudreau, A., Pouyet, J., Daune, M. P., & Poirier, G. G. (1986) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)62715-8 · Cited by 202 · see citing works
Tantin, D. R., Kansal, A., & Carey, M. (1997) · Molecular and Cellular Biology · doi:10.1128/mcb.17.12.6803 · Cited by 198 · see citing works
Poly(ADP-ribosyl)ated chromatin domains: access granted
Rouleau, M., Aubin, R. A., & Poirier, G. G. (2004) · Journal of Cell Science · doi:10.1242/jcs.01080 · Cited by 194 · see citing works
Rapid Switching of TFIIH between RNA Polymerase I and II Transcription and DNA Repair In Vivo
Hoogstraten, D., Nigg, A. L., Heath, H., Mullenders, L. H. F., DRIEL, R. V., Hoeijmakers, J. H. J., Vermeulen, W., & Houtsmuller, A. B. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00709-8 · Cited by 191 · see citing works
RNA polymerase II stalled at a thymine dimer: footprint and effect on excision repair
Selby, C. P., Drapkin, R., Reinberg, D., & Sancar, A. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.4.787 · Cited by 186 · see citing works
DNA Damage in the Nucleosome Core Is Refractory to Repair by Human Excision Nuclease
Hara, R., Mo, J., & Sancar, A. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.24.9173-9181.2000 · Cited by 184 · see citing works
Martini, E. M.-D., Roche, D. M. J., Marheineke, K., Verreault, A., & Almouzni, G. (1998) · The Journal of Cell Biology · doi:10.1083/jcb.143.3.563 · Cited by 182 · see citing works
Transcription coactivator p300 binds PCNA and may have a role in DNA repair synthesis
Hasan, S., Hassa, P. O., Imhof, R., & Hottiger, M. O. (2001) · Nature · doi:10.1038/35066610 · Cited by 177 · see citing works
Sweder, K., & Hanawalt, P. C. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.22.10696 · Cited by 175 · see citing works
Ura, K., Araki, M., Saeki, H., Masutani, C., Ito, T., Iwai, S., Mizukoshi, T., Kaneda, Y., & Hanaoka, F. (2001) · The EMBO Journal · doi:10.1093/emboj/20.8.2004 · Cited by 168 · see citing works
Beard, B. C., Wilson, S. H., & Smerdon, M. J. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1330328100 · Cited by 161 · see citing works
Self-citationDualan, R., Brody, T., Keeney, S., Nichols, A. F., Admon, A., & Linn, S. (1995) · Genomics · doi:10.1006/geno.1995.1215 · Cited by 161 · see citing works
TFIIH Plays an Essential Role in RNA Polymerase I Transcription
Iben, S., Tschochner, H., Bier, M., Hoogstraten, D., Hozák, P., Egly, J., & Grummt, I. (2002) · Cell · doi:10.1016/s0092-8674(02)00729-8 · Cited by 145 · see citing works
Hara, R., & Sancar, A. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.19.6779-6787.2002 · Cited by 143 · see citing works
Preferential DNA Repair in Human Cells
Wilkins, R. J., & Hart, R. W. (1974) · Nature · doi:10.1038/247035a0 · Cited by 142 · see citing works
Wellinger, R. E., & Thoma, F. (1997) · The EMBO Journal · doi:10.1093/emboj/16.16.5046 · Cited by 141 · see citing works
Mechanisms of transcription-repair coupling and mutation frequency decline
Selby, C. P., & Sancar, A. (1994) · Microbiological Reviews · doi:10.1128/mr.58.3.317-329.1994 · Cited by 139 · see citing works
Enhanced DNA Repair Synthesis in Hyperacetylated Nucleosomes
Ramanathan, B., & Smerdon, M. J. (1989) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)60422-3 · Cited by 138 · see citing works
Self-citationDatta, A., Bagchi, S., Nag, A., Shiyanov, P. A., Adami, G. R., Yoon, T., & Raychaudhuri, P. (2001) · Mutation Research/DNA Repair · doi:10.1016/s0921-8777(01)00082-9 · Cited by 138 · see citing works
Rpb4 and Rpb9 mediate subpathways of transcription‐coupled DNA repair in Saccharomyces cerevisiae
Li, S., & Smerdon, M. J. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf589 · Cited by 137 · see citing works
Self-citationDNA Repair Rates Mapped Along the Human PGK1 Gene at Nucleotide Resolution
Gao, S., Drouin, R., & Holmquist, G. P. (1994) · Science · doi:10.1126/science.8128226 · Cited by 135 · see citing works
Functional characterization of global genomic DNA repair and its implications for cancer
Hanawalt, P. C. (2003) · Mutation Research/Reviews in Mutation Research · doi:10.1016/j.mrrev.2003.06.002 · Cited by 133 · see citing works
Who's on first in the cellular response to DNA damage?
Cline, S. D., & Hanawalt, P. C. (2003) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1101 · Cited by 129 · see citing works
DNA base excision repair of uracil residues in reconstituted nucleosome core particles
Nilsen, H. L., Lindahl, T. L., & Verreault, A. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf581 · Cited by 127 · see citing works
CAF-1 and the inheritance of chromatin states: at the crossroads of DNA replication and repair
Ridgway, P., & Almouzni, G. (2000) · Journal of Cell Science · doi:10.1242/jcs.113.15.2647 · Cited by 125 · see citing works
Keeney, S., Eker, A. P. M., Brody, T., Vermeulen, W., Bootsma, D., Hoeijmakers, J. H. J., & Linn, S. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.9.4053 · Cited by 120 · see citing works
Smerdon, M. J., Lan, S., Calza, R. E., & Reeves, R. (1982) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)33468-9 · Cited by 118 · see citing works
Self-citationModulation of DNA Damage and DNA Repair in Chromatin
Smerdon, M. J., & Conconi, A. (1998) · Progress in nucleic acid research and molecular biology · doi:10.1016/s0079-6603(08)60509-7 · Cited by 117 · see citing works
Self-citationSmerdon, M. J., Tlsty, T. D., & Lieberman, M. W. (1978) · Biochemistry · doi:10.1021/bi00605a020 · Cited by 117 · see citing works
Self-citationTu, Y., Tornaletti, S., & Pfeifer, G. P. (1996) · The EMBO Journal · doi:10.1002/j.1460-2075.1996.tb00400.x · Cited by 114 · see citing works
Nucleotide excision repair of DNA by human cell extracts is suppressed in reconstituted nucleosomes.
Wang, Z. G., Wu, X., & Friedberg, E. C. (1991) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)54596-8 · Cited by 109 · see citing works
Nucleotide Excision Repair from Site-Specifically Platinum-Modified Nucleosomes
Wang, D., Hara, R., Singh, G., Sancar, A., & Lippard, S. J. (2003) · Biochemistry · doi:10.1021/bi034264k · Cited by 104 · see citing works
Yuan, X., Zhao, J., Zentgraf, H., Hoffmann‐Rohrer, U., & Grummt, I. (2002) · EMBO Reports · doi:10.1093/embo-reports/kvf212 · Cited by 96 · see citing works
Salt induced transitions of chromatin core particles studied by tyrosine fluorescence anisotropy
Libertini, L. J., & Small, E. W. (1980) · Nucleic Acids Research · doi:10.1093/nar/8.16.3517 · Cited by 90 · see citing works
Transcription-coupled repair in RNA polymerase I-transcribed genes of yeast
Conconi, A., Bespalov, V. A., & Smerdon, M. J. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.022373099 · Cited by 87 · see citing works
Self-citationSpt4 modulates Rad26 requirement in transcription‐coupled nucleotide excision repair
Jansen, L. E. T., den Dulk, H., Brouns, R. M., de Ruijter, M., Brandsma, J. A., & Brouwer, J. (2000) · The EMBO Journal · doi:10.1093/emboj/19.23.6498 · Cited by 83 · see citing works
Gaillard, H., Fitzgerald, D. J., Smith, C. L., Peterson, C. L., Richmond, T. J., & Thoma, F. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m300770200 · Cited by 79 · see citing works
Teng, Y., Yu, Y., & Waters, R. (2002) · Journal of Molecular Biology · doi:10.1006/jmbi.2001.5383 · Cited by 75 · see citing works
Sugasawa, K., Masutani, C., & Hanaoka, F. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)52982-3 · Cited by 70 · see citing works
Targeting of histone tails by poly(ADP-ribose).
Panzeter, P. L., Zweifel, B., Malanga, M., Waser, S. H., Richard, M., & Althaus, F. R. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)46752-4 · Cited by 70 · see citing works
Repairing DNA damage in chromatin
Gontijo, A. M., Green, C., & Almouzni, G. (2003) · Biochimie · doi:10.1016/j.biochi.2003.10.018 · Cited by 70 · see citing works
Requirement for Yeast RAD26, a Homolog of the HumanCSB Gene, in Elongation by RNA Polymerase II
Lee, S., Yu, S.-L., Prakash, L., & Prakash, S. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.24.8651-8656.2001 · Cited by 70 · see citing works
Nonuniform distribution of DNA repair in chromatin after treatment with methyl methanesulfonate
Bodell, W. J. (1977) · Nucleic Acids Research · doi:10.1093/nar/4.8.2619 · Cited by 69 · see citing works
Genomic instability: environmental invasion and the enemies within
Hanawalt, P. C. (1998) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/s0027-5107(98)00084-0 · Cited by 68 · see citing works
Hara, R., & Sancar, A. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.12.4121-4125.2003 · Cited by 65 · see citing works
Tijsterman, M., Verhage, R. A., van de Putte, P., Jong, J. G. T.-D., & Brouwer, J. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.15.8027 · Cited by 63 · see citing works
Cisplatin-induced Post-translational Modification of Histones H3 and H4
Wang, D., & Lippard, S. J. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m402547200 · Cited by 60 · see citing works
Bhatia, P. K., Verhage, R. A., Brouwer, J., & Friedberg, E. C. (1996) · Journal of Bacteriology · doi:10.1128/jb.178.20.5977-5988.1996 · Cited by 60 · see citing works
Transcriptional Activators Stimulate DNA Repair
Frit, P., Kwon, K.-R., Coin, F., Auriol, J., Dubaele, S., Salles, B., & Egly, J. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00732-3 · Cited by 59 · see citing works
Nucleotide Excision Repair of the 5 S Ribosomal RNA Gene Assembled into a Nucleosome
Liu, X., & Smerdon, M. J. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m002206200 · Cited by 58 · see citing works
Self-citationChapter 16 Control of Class II Gene Transcription during in Vitro Nucleosome Assembly
Workman, J. L., Taylor, I. C. A., Kingston, R. E., & Roeder, R. G. (1991) · Methods in cell biology · doi:10.1016/s0091-679x(08)60582-8 · Cited by 56 · see citing works
Dissecting Transcription-coupled and Global Genomic Repair in the Chromatin of Yeast GAL1-10 Genes
Li, S., & Smerdon, M. J. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m312004200 · Cited by 56 · see citing works
Self-citationSchieferstein, U., & Thoma, F. (1998) · The EMBO Journal · doi:10.1093/emboj/17.1.306 · Cited by 51 · see citing works
Lee, S.-K., Yu, S., Prakash, L., & Prakash, S. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.12.4383-4389.2002 · Cited by 51 · see citing works
DNA repair of a single UV photoproduct in a designed nucleosome
Kosmoski, J. V., Ackerman, E. J., & Smerdon, M. J. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.181073398 · Cited by 48 · see citing works
Self-citationRepair of Active and Silenced rDNA in Yeast
Meier, A., Livingstone-Zatchej, M., & Thoma, F. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m110941200 · Cited by 47 · see citing works
Synthesis and Nucleosome Structure of DNA Containing a UV Photoproduct at a Specific Site
Kosmoski, J. V., & Smerdon, M. J. (1999) · Biochemistry · doi:10.1021/bi990297h · Cited by 47 · see citing works
Self-citationMatunis, M. J. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00653-6 · Cited by 45 · see citing works
Livingstone-Zatchej, M., Marcionelli, R., Möller, K., de Pril, R., & Thoma, F. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m306335200 · Cited by 44 · see citing works
Poly(ADP-ribose) binding properties of histone H1 variants
Malanga, M., Atorino, L., Tramontano, F., Farina, B., & Quesada, P. (1998) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/s0167-4781(98)00110-9 · Cited by 40 · see citing works
Excision repair of pyrimidine dimers from simian virus 40 minichromosomes in vitro.
Evans, D. H., & Linn, S. (1984) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)90958-0 · Cited by 39 · see citing works
Nucleotide excision repair “a legacy of creativity”
Cleaver, J. E., Karplus, K. J., Kashani–Sabet, M., & Limoli, C. L. (2001) · Mutation Research/DNA Repair · doi:10.1016/s0921-8777(00)00073-2 · Cited by 39 · see citing works
Tijsterman, M. (1996) · Nucleic Acids Research · doi:10.1093/nar/24.18.3499 · Cited by 38 · see citing works
Oda, N., Saxena, J. K., Jenkins, T. M., Prasad, R., Wilson, S. H., & Ackerman, E. J. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.23.13816 · Cited by 37 · see citing works
Histone shuttle driven by the automodification cycle of poly(ADP‐ribose) polymerase
Althaus, F. R., Höfferer, L., Kleczkowska, H. E., Malanga, M., Naegeli, H., Panzeter, P. L., & Realini, C. A. (1993) · Environmental and Molecular Mutagenesis · doi:10.1002/em.2850220417 · Cited by 36 · see citing works
Transcription, nucleosome stability, and DNA repair in a yeast minichromosome.
Bedoyan, J. K., Gupta, R., Thoma, F., & Smerdon, M. J. (1992) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)42653-1 · Cited by 33 · see citing works
Self-citationIntragenic Domains of Strand-specific Repair in
Kunala, S., & Brash, D. E. (1995) · Journal of Molecular Biology · doi:10.1006/jmbi.1994.0082 · Cited by 32 · see citing works
Li, S., & Waters, R. (1997) · Journal of Molecular Biology · doi:10.1006/jmbi.1997.1154 · Cited by 28 · see citing works
Teng, Y. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.5.1114 · Cited by 26 · see citing works
Tommasi, S. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.20.3991 · Cited by 26 · see citing works
Conconi, A., Liu, X., Koriazova, L., Ackerman, E. J., & Smerdon, M. J. (1999) · The EMBO Journal · doi:10.1093/emboj/18.5.1387 · Cited by 24 · see citing works
Self-citationReagan, M. S., & Friedberg, E. C. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.21.4257 · Cited by 23 · see citing works
Defective nucleotide excision repair in yeast hpr1 and tho2 mutants
González‐Barrera, S. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.10.2193 · Cited by 22 · see citing works
Deletion of the CSB homolog, RAD26, yields Spt- strains with proficient transcription-coupled repair
Gregory, S. M. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.14.3080 · Cited by 22 · see citing works
Protić, M., Hirschfeld, S., Tsang, A. P., Wagner, M., Dixon, K., & Levine, A. S. (1989) · PubMed · Cited by 16 · see citing works
Kwon, Y., & Smerdon, M. J. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m308645200 · Cited by 13 · see citing works
Self-citationDirect measurement of chromosome repair by premature chromosome condensation.
Hittelman, W. (1990) · PubMed · Cited by 10 · see citing works
Yang, Z., & Hayes, J. J. (2004) · Methods · doi:10.1016/j.ymeth.2003.10.017 · Cited by 8 · see citing works
Analysis of DNA Repair on Nucleosome Templates
Beard, B. C., & Smerdon, M. J. (2003) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(03)77032-3 · Cited by 5 · see citing works
Self-citation
Flagged first, then by citations
2 of the 119 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Understanding nucleotide excision repair and its roles in cancer and ageing
Marteijn, J. A., Lans, H., Vermeulen, W., & Hoeijmakers, J. H. J. (2014) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3822 · Cited by 1,192 · see citing works
Roles of ATM and NBS1 in chromatin structure modulation and DNA double-strand break repair
Berkovich, E., Monnat, R. J., & Kastan, M. B. (2007) · Nature Cell Biology · doi:10.1038/ncb1599 · Cited by 477 · see citing works
Kapetanaki, M. G., Guerrero‐Santoro, J., Bisi, D. C., Hsieh, C. L., Rapić-Otrin, V., & Levine, A. S. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0511160103 · Cited by 323 · see citing works
ATP-dependent chromatin remodeling in the DNA-damage response
Lans, H., Marteijn, J. A. F., & Vermeulen, W. (2012) · Epigenetics & Chromatin · doi:10.1186/1756-8935-5-4 · Cited by 211 · see citing works
Focus on UV-Induced DNA Damage and Repair—Disease Relevance and Protective Strategies
Kciuk, M., Marciniak, B., Mojzych, M., & Kontek, R. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21197264 · Cited by 168 · see citing works
Cockayne syndrome group B protein (CSB) plays a general role in chromatin maintenance and remodeling
Newman, J. C., Bailey, A. D., & Weiner, A. M. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0510909103 · Cited by 154 · see citing works
Gong, F., Fahy, D., & Smerdon, M. J. (2006) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1152 · Cited by 149 · see citing works
Self-citationEnhanced Chromatin Dynamics by FACT Promotes Transcriptional Restart after UV-Induced DNA Damage
Dinant, C., Ampatziadis-Michailidis, G., Lans, H., Tresini, M., Lagarou, A., Grosbart, M., Theil, A. F., van Cappellen, W. A., Kimurâ, H., Bártek, J., et al. (2013) · Molecular Cell · doi:10.1016/j.molcel.2013.08.007 · Cited by 145 · see citing works
ATP-dependent chromatin remodeling factors and DNA damage repair
Osley, M. A., Tsukuda, T., & Nickoloff, J. A. (2007) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/j.mrfmmm.2006.07.011 · Cited by 141 · see citing works
Nucleotide Excision Repair in Human Cells
Hu, J., Choi, J.-H., Gaddameedhi, S., Kemp, M. G., Reardon, J. T., & Sancar, A. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.482257 · Cited by 104 · see citing works
Hinz, J. M., Rodriguez, Y., & Smerdon, M. J. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0914443107 · Cited by 104 · see citing works
Self-citationAtaian, Y., & Krebs, J. E. (2006) · Biochemistry and Cell Biology · doi:10.1139/o06-075 · Cited by 98 · see citing works
Damage sensor role of UV-DDB during base excision repair
Jang, S., Kumar, N., Beckwitt, E. C., Kong, M., Fouquerel, E., Rapić-Otrin, V., Prasad, R., Watkins, S. C., Khuu, C., Majumdar, C., et al. (2019) · Nature Structural & Molecular Biology · doi:10.1038/s41594-019-0261-7 · Cited by 89 · see citing works
Deciphering the Roles of the Histone H2B N-Terminal Domain in Genome-Wide Transcription
Parra, M. A., Kerr, D., Fahy, D., Pouchnik, D. J., & Wyrick, J. J. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.26.10.3842-3852.2006 · Cited by 87 · see citing works
Histone ubiquitylation and its roles in transcription and DNA damage response
Meas, R., & Mao, P. (2015) · DNA repair · doi:10.1016/j.dnarep.2015.09.016 · Cited by 85 · see citing works
Molecular Regulation of <scp>UV</scp> ‐Induced <scp>DNA</scp> Repair
Shah, P., & He, Y. (2015) · Photochemistry and Photobiology · doi:10.1111/php.12406 · Cited by 75 · see citing works
Cohn, M. A., & D’Andrea, A. D. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.10.009 · Cited by 76 · see citing works
Genome-wide mapping of nucleotide excision repair with XR-seq
Hu, J., Li, W., Adebalı, O., Yang, Y., Oztas, O., Selby, C. P., & Sancar, A. (2018) · Nature Protocols · doi:10.1038/s41596-018-0093-7 · Cited by 71 · see citing works
Downregulation of SWI/SNF chromatin remodeling factor subunits modulates cisplatin cytotoxicity
Kothandapani, A., Gopalakrishnan, K., Kahali, B., Reisman, D., & Patrick, S. M. (2012) · Experimental Cell Research · doi:10.1016/j.yexcr.2012.06.011 · Cited by 68 · see citing works
Lan, L., Nakajima, S., Kapetanaki, M. G., Hsieh, C. L., Fagerburg, M. V., Thickman, K. R., Rodriguez-Collazo, P., Leuba, S. H., Levine, A. S., & Rapić-Otrin, V. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.307058 · Cited by 67 · see citing works
Rapid accessibility of nucleosomal DNA in yeast on a second time scale
Bucceri, A., Kapitza, K., & Thoma, F. (2006) · The EMBO Journal · doi:10.1038/sj.emboj.7601196 · Cited by 66 · see citing works
Tatum, D. M., & Li, S. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.241570 · Cited by 61 · see citing works
Zhu, Q., Wani, G., Arab, H. H., Elmahdy, M., Ray, A., & Wani, A. A. (2008) · DNA repair · doi:10.1016/j.dnarep.2008.11.007 · Cited by 61 · see citing works
Chaudhuri, S., Wyrick, J. J., & Smerdon, M. J. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp003 · Cited by 58 · see citing works
Self-citationDetecting UV‐lesions in the genome: The modular CRL4 ubiquitin ligase does it best!
Scrima, A., Fischer, E. S., Lingaraju, G. M., Böhm, K., Cavadini, S., & Thomä, N. H. (2011) · FEBS Letters · doi:10.1016/j.febslet.2011.04.064 · Cited by 57 · see citing works
Souliotis, V. L., Vougas, K. N., Gorgoulis, V. G., & Sfikakis, P. P. (2016) · Arthritis Research & Therapy · doi:10.1186/s13075-016-1081-3 · Cited by 56 · see citing works
RetractedHigh-resolution characterization of CPD hotspot formation in human fibroblasts
Zavala, A. G., Morris, R. T., Wyrick, J. J., & Smerdon, M. J. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt912 · Cited by 54 · see citing works
Self-citationDNA excision repair at telomeres
Jia, P., Her, C., & Chai, W. (2015) · DNA repair · doi:10.1016/j.dnarep.2015.09.017 · Cited by 51 · see citing works
Intrinsic disorder explains diverse nuclear roles of chromatin remodeling proteins
Sandhu, K. S. (2008) · Journal of Molecular Recognition · doi:10.1002/jmr.915 · Cited by 49 · see citing works
Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome
Li, W., Adebalı, O., Yang, Y., Selby, C. P., & Sancar, A. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1801687115 · Cited by 45 · see citing works
Nucleotide excision repair leaves a mark on chromatin: DNA damage detection in nucleosomes
Apelt, K., Lans, H., Schärer, O. D., & Luijsterburg, M. S. (2021) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-021-03984-7 · Cited by 43 · see citing works
Yauk, C. L., Polyzos, A. A., Rowan‐Carroll, A., Kortubash, I., Williams, A., & Kovalchuk, O. (2008) · Environmental and Molecular Mutagenesis · doi:10.1002/em.20359 · Cited by 44 · see citing works
Altering the chromatin landscape for nucleotide excision repair
Chaudhuri, R. N., & Smerdon, M. J. (2009) · Mutation Research/Reviews in Mutation Research · doi:10.1016/j.mrrev.2009.01.002 · Cited by 42 · see citing works
Self-citationKuo, W.-H. W., Wang, Y., Wong, R. P. C., Campos, E. I., & Li, G. (2007) · Experimental Cell Research · doi:10.1016/j.yexcr.2007.02.010 · Cited by 42 · see citing works
Chaudhuri, R. N., Kyriss, M., Smerdon, J. W., Wyrick, J. J., & Smerdon, M. J. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp1074 · Cited by 42 · see citing works
Self-citationThe Emerging Roles of ATP-Dependent Chromatin Remodeling Enzymes in Nucleotide Excision Repair
Czaja, W., Mao, P., & Smerdon, M. J. (2012) · International Journal of Molecular Sciences · doi:10.3390/ijms130911954 · Cited by 40 · see citing works
Self-citationContribution of the Serine 129 of Histone H2A to Chromatin Structure
Fink, M., Imholz, D., & Thoma, F. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.02077-06 · Cited by 40 · see citing works
Gkotzamanidou, M. A., Terpos, E., Bamia, C., Munshi, N. C., Dimopoulos, M. A., & Souliotis, V. L. (2016) · Blood · doi:10.1182/blood-2016-01-691618 · Cited by 39 · see citing works
DNA damage sensitivity of SWI/SNF-deficient cells depends on TFIIH subunit p62/GTF2H1
Ribeiro-Silva, C., Aydın, Ö. Z., Mesquita-Ribeiro, R., Slyšková, J., Helfricht, A., Marteijn, J. A. F., Hoeijmakers, J. H. J., Lans, H., & Vermeulen, W. (2018) · Nature Communications · doi:10.1038/s41467-018-06402-y · Cited by 38 · see citing works
The roles of Rad16 and Rad26 in repairing repressed and actively transcribed genes in yeast
Li, S., Ding, B., LeJeune, D., Ruggiero, C., Chen, X., & Smerdon, M. J. (2007) · DNA repair · doi:10.1016/j.dnarep.2007.05.005 · Cited by 33 · see citing works
Self-citationGhodgaonkar, M. M., Zacal, N., Kassam, S. N., Rainbow, A. J., & Shah, G. M. (2008) · DNA repair · doi:10.1016/j.dnarep.2008.01.001 · Cited by 30 · see citing works
Maltseva, E. A., Rechkunova, N. I., Gillet, L. C. J., Petruseva, I. O., Schärer, O. D., & Lavrik, O. I. (2007) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/j.bbagen.2007.01.007 · Cited by 31 · see citing works
Persistence and Tolerance of DNA Damage Induced by Chronic UVB Irradiation of the Human Genome
Bérubé, R., Desgarnier, M. D., Douki, T., Lechasseur, A., & Rochette, P. J. (2017) · Journal of Investigative Dermatology · doi:10.1016/j.jid.2017.08.044 · Cited by 29 · see citing works
A single amino acid change in histone H4 enhances UV survival and DNA repair in yeast
Nag, R., Gong, F., Fahy, D., & Smerdon, M. J. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn311 · Cited by 29 · see citing works
Self-citationScassa, M. É., Marazita, M. C., Ceruti, J. M., Carcagno, A. L., Sirkin, P. F., González‐Cid, M., Pignataro, O. P., & Cánepa, E. T. (2007) · DNA repair · doi:10.1016/j.dnarep.2006.12.003 · Cited by 28 · see citing works
Maher, R. L., Marsden, C. G., Averill, A. M., Wallace, S. S., Sweasy, J. B., & Pederson, D. S. (2017) · DNA repair · doi:10.1016/j.dnarep.2017.06.029 · Cited by 25 · see citing works
Tremblay, M., Teng, Y., Paquette, M., Waters, R., & Conconi, A. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.00137-08 · Cited by 24 · see citing works
Zhang, L., Jones, K. L., & Gong, F. (2009) · Biochemistry and Cell Biology · doi:10.1139/o08-101 · Cited by 22 · see citing works
Self-citationShafirovich, V., Kolbanovskiy, M., Kropachev, K. Y., Liu, Z., Cai, Y., Terzidis, M. A., Masi, A., Chatgilialoglu, C., Amin, S., Dadali, A., et al. (2018) · Biochemistry · doi:10.1021/acs.biochem.8b01066 · Cited by 23 · see citing works
The nucleosome‐binding protein HMGN2 modulates global genome repair
Subramanian, M., Gonzalez, R. W., Patil, H., Ueda, T., Lim, J., Kraemer, K. H., Bustin, M., & Bergel, M. (2009) · FEBS Journal · doi:10.1111/j.1742-4658.2009.07375.x · Cited by 21 · see citing works
Friedl, A. A., Mazurek, B., & Seiler, D. M. (2012) · Frontiers in Oncology · doi:10.3389/fonc.2012.00117 · Cited by 21 · see citing works
The role of chromatin proteins in DNA damage recognition and repair Mini-review
Widłak, P., Pietrowska, M., & Łanuszewska, J. (2005) · Histochemistry and Cell Biology · doi:10.1007/s00418-005-0053-5 · Cited by 21 · see citing works
Repair-Independent Chromatin Assembly onto Active Ribosomal Genes in Yeast after UV Irradiation
Conconi, A., Paquette, M., Fahy, D., Bespalov, V. A., & Smerdon, M. J. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.22.9773-9783.2005 · Cited by 21 · see citing works
Self-citationDetection of bulky DNA lesions: DDB2 at the interface of chromatin and DNA repair in eukaryotes
Jones, K. L., Zhang, L., Seldeen, K. L., & Gong, F. (2010) · IUBMB Life · doi:10.1002/iub.391 · Cited by 14 · see citing works
Self-citationNucleotide Excision Repair from Bacteria to Humans: Structure–Function Studies
Ye, P., Wang, H., Santana‐Santos, L., Kisker, C., & Houten, B. V. (2010) · Humana Press eBooks · doi:10.1007/978-1-61737-995-6_13 · Cited by 12 · see citing works
The role of human replicative DNA polymerases in DNA repair and replication
Rytkönen, A. K. (2006) · Cited by 11 · see citing works
A predictive chromatin architecture nexus regulates transcription and DNA damage repair
Bhat, A., Bhan, S., Kabiraj, A., PANDITA, R. K., Ramos, K. S., Nandi, S., Sopori, S., Sarkar, P. S., Dhar, A., Pandita, S., et al. (2025) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2025.108300 · Cited by 10 · see citing works
Nucleotide Excision Repair in S. cerevisiae
Tatum, D. M., & Li, S. (2011) · InTech eBooks · doi:10.5772/22129 · Cited by 8 · see citing works
Assays for chromatin remodeling during nucleotide excision repair in Saccharomyces cerevisiae
Zhang, L., Jones, K. L., Smerdon, M. J., & Gong, F. (2009) · Methods · doi:10.1016/j.ymeth.2009.03.017 · Cited by 9 · see citing works
Self-citationLettieri, T., Kraehenbuehl, R., Capiaghi, C., Livingstone-Zatchej, M., & Thoma, F. (2008) · DNA repair · doi:10.1016/j.dnarep.2008.01.016 · Cited by 9 · see citing works
In vitro chromatin templates to study nucleotide excision repair
Liu, X. (2015) · DNA repair · doi:10.1016/j.dnarep.2015.09.026 · Cited by 8 · see citing works
Ray, A., Khan, P., & Chaudhuri, R. N. (2018) · DNA repair · doi:10.1016/j.dnarep.2018.09.009 · Cited by 8 · see citing works
Alao, J. P., Olesch, J., & Sunnerhagen, P. (2009) · Molecular Cancer Therapeutics · doi:10.1158/1535-7163.mct-09-0218 · Cited by 7 · see citing works
Scala, G., Affinito, O., Miele, G., Monticelli, A., & Cocozza, S. (2014) · PLoS ONE · doi:10.1371/journal.pone.0114432 · Cited by 6 · see citing works
Andreev, V. I., Hristova, R. H., Asparuhova, M., Danovski, G., Stoynov, S., & Gospodinov, A. G. (2018) · DNA repair · doi:10.1016/j.dnarep.2018.12.007 · Cited by 6 · see citing works
Nucleotide Excision Repair in the Three Domains of Life
Farnell, D. (2011) · Western Undergraduate Research Journal Health and Natural Sciences · doi:10.5206/wurjhns.2010-11.1 · Cited by 5 · see citing works
He, L., & Lomberk, G. A. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.735107 · Cited by 2 · see citing works
Gong, F., Fahy, D., & Smerdon, M. J. (2006) · Protocol Exchange · doi:10.1038/nprot.2006.297 · Cited by 2 · see citing works
Self-citationChromatin Remodeling in Nucleotide Excision Repair in Mammalian Cells
Martnez-Lpez, W., Mndez-Acua, L., Bervejillo, V., Valencia-Payan, J., & Moreno-Ortega, D. (2013) · InTech eBooks · doi:10.5772/54709 · Cited by 1 · see citing works
On the histone acetyltransferase hMOF
Taipale, M. (2005) · Työväentutkimus Vuosikirja
Fink, M. F. (2007) · Repository for Publications and Research Data (ETH Zurich) · doi:10.3929/ethz-a-005506702
Saccharomyces cerevisiae as a Model System to Study the Role of Human DDB2 in Chromatin Repair
Kristi, L., Zhang, L., & Gong, F. (2011) · InTech eBooks · doi:10.5772/20874
Self-citationRole of tumour suppressor ING3 in melanoma pathogenesis
Wang, Y. (2009) · cIRcle (University of British Columbia) · doi:10.14288/1.0066899
Alhegaili, A. S. (2016) · Figshare
Hamed, H. A. (2018) · ORCA Online Research @Cardiff (Cardiff University)
Alao, J. P., Olesch, J., & Sunnerhagen, P. (2023) · doi:10.1158/1535-7163.c.6531986
Alao, J. P., Olesch, J., & Sunnerhagen, P. (2023) · doi:10.1158/1535-7163.c.6531986.v1
3-D Genome organization of DNA damage repair
Banerjee, U. K. (2017) · theses.fr (ABES) · doi:10.70675/25480b49zc194z4a4bzb6b0z2f84dab6ccef
- Authors
- Gong, F., Kwon, Y., & Smerdon, M. J.
- Affiliations
- Washington State University (US)
- Corresponding author
- Smerdon, Michael J.
- Venue
- DNA Repair
- Publisher
- Elsevier BV
- Published
- 2005-07
- Volume
- 4
- Issue
- 8
- Pages
- 884-896
- ISSN
- 1568-7856 (ISSN-L)
- 1568-7864
- OpenAlex
- W2082425829
- Cited by
- 80
- References
- 119
- Citations by year
- 2025: 1 · 2023: 2 · 2021: 2 · 2020: 1 · 2019: 1 · 2018: 7 · 2017: 3 · 2016: 3 · 2015: 3 · 2014: 3 · 2013: 4 · 2012: 5
- FWCI
- 0.73
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- DNA repair (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
- National Institute of Environmental Health Sciences (R37ES002614, ES04106, R01ES002614, R01ES004106, ES02614)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
- Keywords
- nucleotide excision repair, chromatin, DNA damage detection, transcription-coupled repair, histone modifications, chromatin remodeling complexes, chromatin assembly factor, DNA damage signaling
- MeSH terms
- Acetylation, Chromatin, DNA Repair, Histones, Poly Adenosine Diphosphate Ribose, Saccharomyces cerevisiae, Chromatin Assembly and Disassembly
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