The DOI matches its Crossref record; 29 of the 29 references it cites were found in a registry or an index.
Sequence-based diversity of 23 autosomal STR loci in Koreans investigated using an in-house massively parallel sequencing panel
Abstract
As DNA databases continue to grow and international cooperation increases, forensic STR loci have expanded to increase the discriminatory power and inter-database compatibility. Current capillary electrophoresis (CE) and/or massively parallel sequencing (MPS)-based commercial STR analysis systems reflect such changing trends of expanding STR loci. Due to the general gains of larger multiplexing and the detection of sequence variation, the application of MPS technology to STR analysis has further improved discrimination and is expected to aid in mixture interpretation by increasing the effective number of alleles. However, high-throughput analysis has rarely been reported for forensic DNA databasing. In this study, we present the sequencing results from 250 Korean samples at 23 commonly used STR loci (D1S1656, TPOX, D2S441, D2S1338, D3S1358, FGA, CSF1PO, D5S818, D6S1043, D7S820, D8S1179, D10S1248, TH01, vWA, D12S391, D13S317, Penta E, D16S539, D18S51, D19S433, D21S11, Penta D, and D22S1045) using an in-house assay designed for MPS. All amplicons in the multiplex exhibited a size range of 77 to 217 base pairs, and the barcoded library for the MPS run was easily prepared using a PCR-based library preparation method followed by sequencing on a MiSeq System (Illumina). We compared the STR genotyping results with those obtained using CE and scrutinized the sequence variations in both the targeted STR and flanking regions. MPS results of 23 autosomal STRs were 99.97% concordant with…
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“Other specialized databases have been developed recently in this regard (e.g. (122–126)), starting off from human-centered research questions and expanding to examples of many other species, such as the tobacco plant (127), Trichophytum rubrum, a fungus causing skin disease (128), or the Cannabis plant to characterize the origin of hemp seeds (US Cannabis DNA database; (129)).”
From Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases (2019) · cites this paper as [125]
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Cited by
Tørresen, O. K., Star, B., Mier, P., Andrade-Navarro, M. A., Bateman, A., Jarnot, P., Gruca, A., Grynberg, M., Kajava, A. V., Promponas, V. J., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz841 · Cited by 347
Metadata
- Authors
- Kim, E. H., Lee, H. Y., Kwon, S. Y., Lee, E. Y., Yang, W. I., & Shin, K.-J.
- Venue
- Forensic Science International: Genetics
- Publisher
- Elsevier BV
- Published
- 2017-09
- Volume
- 30
- Pages
- 134-140
- ISSN
- 1872-4973
- Cited by
- 25
- References
- 29
- Language
- en
- Licence
- www.elsevier.com/tdm/userlicense/1.0/ (tdm)
- Funders
- DNA analysis of Supreme Prosecutors’ Office, Republic of Korea (1333-304-260)
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