Finding the Missing Links among Metabolites, Microbes, and the Host

Cited by (317)

Items 201–300 of 317

  1. The Microbiome Factor in Drug Discovery and Development
    Andrea Nuzzo, James R. Brown · 2019 · Chemical Research in Toxicology
  2. Interplay between the Gut Microbiome and Metabolism in Ulcerative Colitis Mice Treated with the Dietary Ingredient Phloretin
    Jie Ren, Puze Li, Dong Yan, Min Li, Jinsong Qi, Mingyong Wang, Genshen Zhong, Minna Wu · 2021 · Journal of Microbiology and Biotechnology
  3. Fecal Luminal Factors from Patients with Gastrointestinal Diseases Alter Gene Expression Profiles in Caco-2 Cells and Colonoids
    Luiza Moraes, Cristina Iribarren, Maria Sapnara, Otto I. Savolainen, Hans Törnblom, Yvonne Wettergren, Hans Strid, Magnus Simrén, Maria K. Magnusson, Lena Öhman · 2022 · International Journal of Molecular Sciences
  4. Microbial molecules, metabolites, and malignancy
    Ryan Michael Thomas · 2025 · Neoplasia
  5. Herbal Medicine and Acupuncture Combined Treatment Attenuates Colitis in Rats
    Yu‐Mi Lee, Seung-Ho Seo, Seong-Young Cho, Dong-Hee Choi, Min-Woo Cheon, Hee-Young Kim, Dae-Hwan Youn, Sok Cheon Pak, Hong-Seok Son, Chang-Su Na · 2021 · The American Journal of Chinese Medicine
  6. The Discovery of Gut Microbial Metabolites as Modulators of Host Susceptibility to Acetaminophen-Induced Hepatotoxicity
    Hyun Woo Lee, Xiaotong Yang, Pei-Ru Jin, Kyoung‐Jae Won, Chang H. Kim, Hyunyoung Jeong · 2024 · Drug Metabolism and Disposition
  7. Getting Our Fingers on the Pulse of Slow-Growing Bacteria in Hard-To-Reach Places
    Tara M. Gallagher, Joann L. Phan, Katrine Whiteson · 2018 · Journal of Bacteriology
  8. Gut microbiome status of urban and rural Filipino adults in relation to diet and metabolic disorders
    Mai Watanabe, Abraham C. Sianoya, Riko Mishima, Phatthanaphong Therdtatha, Abigail Rodriguez, Donna Christene Ramos, Yuan Kun Lee, Leslie Michelle M. Dalmacio, Jiro Nakayama · 2021 · FEMS Microbiology Letters
  9. Microbiome and Metabolome Contributions to Coral Health and Disease
    Monica D. Schul, Andrea L. Mason, Blake Ushijima, Jennifer M. Sneed · 2022 · Biological Bulletin
  10. The researcher's guide to selecting biomarkers in mental health studies
    Josine E. Verhoeven, Owen M. Wolkowitz, Isaac B. Satz, Quinn A. Conklin, Femke Lamers, Catharina Lavebratt, Jue Lin, Daniel Lindqvist, Stefanie E. Mayer, Philippe A. Melas et al. · 2024 · BioEssays
  11. Inflammation as a mediator of stress-related psychiatric disorders
    Michael C. Flux, Christopher A. Lowry · 2022 · Elsevier eBooks
  12. Bacterial metabolites and cardiovascular risk in children with chronic kidney disease
    Julia Schlender, Felix Behrens, Victoria J. McParland, Dominik N. Müller, Nicola Wilck, Hendrik Bartolomaeus, Johannes Benjamin Holle · 2021 · Molecular and Cellular Pediatrics
  13. Ethnicity Associated Microbial and Metabonomic Profiling in Newly Diagnosed Ulcerative Colitis
    Ravi Misra, Magali H. Sarafian, Alexandros Pechlivanis, Nik S. Ding, Jesús Miguéns Blanco, Julie A. K. McDonald, Elaine C. Holmes, Julian Roberto Marchesi, Naila Arebi · 2022 · Clinical and Experimental Gastroenterology
  14. Microbes, Their Metabolites, and Effector Molecules: A Pharmacological Perspective for Host-Microbiota Interaction
    Bharat Bhushan, Brij Pal Singh, Mamta Kumari, Vijendra Mishra, Kamna Saini, Devender Singh · 2019 · Environmental chemistry for a sustainable world
  15. Gut microbiota and chronic rhinosinusitis: a two-sample Mendelian randomization study
    Fang Zhang, Boyu Cai, Jing Luo, Yixi Xiao, Yang Tian, Yi Sun, Huanhai Liu, Jianhui Zhang · 2024 · European Archives of Oto-Rhino-Laryngology
  16. A Focus on Microbiome Completeness and Optimized Colonization Resistance in Neonatology
    Rodney Reynolds Dietert · 2018 · NeoReviews
  17. Plasticity of gene expression in the nervous system by exposure to environmental odorants that inhibit HDACs
    Sachiko Haga‐Yamanaka, Rogelio Nuñez‐Flores, Christi Ann Scott, Sarah Perry, Stephanie Turner Chen, Crystal G. Pontrello, Meera Goh Nair, Anandasankar Ray · 2023 · eLife
  18. Genetic association between gut microbiota and the risk of Guillain-Barré syndrome
    Fangzheng Cao, Houwen Zhang, Bin Xu, Chunrong Li · 2024 · Journal of Affective Disorders
  19. Multifaceted effects of the microbiome in pancreatic cancer: from association to modulation
    Ryan Michael Thomas · 2025 · Nature Reviews Gastroenterology & Hepatology
  20. Conceptual and Computational DFT‐based In Silico Fragmentation Method for the Identification of Metabolite Mass Spectra
    Émilie Cauët, Yannick J. Vanhaegenborgh, Frank De Proft, Paul Geerlings · 2020 · Chemistry - Methods
  21. Effects of Fatty Acids on Hematological Neoplasms: A Mini Review
    Silvia Giannattasio, Maria Dri, Giuseppe Merra, Giovanna Caparello, Tiziana Rampello, Laura Di Renzo · 2021 · Nutrition and Cancer
  22. Preoperative intestinal microbiome and metabolome in elderly patients with delayed neurocognitive recovery
    Hongyu Liu, Xueqing Yin, Jiaying Li, Yan Cao, Yanjie Wang, Wenjing Mu, Zipeng Zhuo, Lu Chen, Zhongjie Zhang, Xutong Qu et al. · 2022 · Anaesthesia Critical Care & Pain Medicine
  23. Fecal microbiota transplantation relieves abdominal bloating in children with functional gastrointestinal disorders via modulating the gut microbiome and metabolome
    Yi Zhong Wang, Fang Fei Xiao, Yong Mei Xiao, Xiao Lu Li, Hui Hu, Kai Hong, Dan Li, Jun Le, Guang Jun Yu, Ting Zhang · 2022 · Journal of Digestive Diseases
  24. Microbiota-associated mechanisms underlying sexual dimorphism in hypertension
    John Henry Dasinger, Bina Joe, Justine M. Abais‐Battad · 2023 · Microbiota and Host
  25. Exploring Microbial Metabolite Receptors in Inflammatory Bowel Disease: An In Silico Analysis of Their Potential Role in Inflammation and Fibrosis
    Michail Spathakis, Nikolas Dovrolis, Eirini Filidou, Leonidas Kandilogiannakis, Gesthimani Tarapatzi, Vassilis Valatas, Ioannis Drygiannakis, Vasilis Paspaliaris, Konstantinos I. Arvanitidis, Vangelis G. Manolopoulos et al. · 2024 · Pharmaceuticals
  26. Anti-aging food that improves markers of health in senior dogs by modulating gut microbiota and metabolite profiles
    Eden Ephraim Ephraim Gebreselassie, Matthew Irick Jackson, Maha Yerramilli, Dennis Edward Jewell · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  27. Spatial metabolomics of in situ, host-microbe interactions
    Benedikt Geier, Emilia M. Sogin, Dolma Michellod, Moritz Janda, Mario Kompauer, Bernhard Spengler, Nicole Dubilier, Manuel Liebeke · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  28. In Need of a Quorum: From Microbes to Mood Via the Immune System
    Joana S. Cruz-Pereira, John F. Cryan · 2020 · American Journal of Psychiatry
  29. Gut Microbiome and Paediatric Inflammatory Bowel Disease: Emerging Mechanistic and Therapeutic Insights Into Pathogenesis and Microbiota‐Based Approaches
    Chu Wang, Dong Zhan · 2025 · IET Systems Biology
  30. Localized Drug Delivery Using Linezolid Hydrogel for Periodontal Therapy
    Iria Seoane‐Viaño, Mariola Seoane-Gigirey, Carlos Bendicho‐Lavilla, Luz María Gigirey, Francisco Javier Otero-Espinar, Santiago Seoane · 2024 · Annals of Orthodontics and Periodontics Specialty
  31. Changes in gut microbiota and metabolites of mice with intravenous graphene oxide-induced embryo toxicity
    Xiaojing Liu, Zengjin Wang, Chuanfeng Teng, Zhiping Wang · 2024 · Toxicological Research
  32. Die Mikroben in uns und der Wettlauf um die Struktur und Biosynthese von Colibactin
    Helge B. Bode · 2015 · Angewandte Chemie
  33. SIGNing a symbiotic treaty with gut microbiota
    Geanncarlo Lugo‐Villarino, Olivier Neyrolles · 2015 · The EMBO Journal
  34. Metabiotics: prospects, challenges and opportunities
    Shenderov Ba, Tkachenko Ei, Mikhail M. Zakharchenko, Alexander V. Sinitsa · 2019 · Medical alphabet
  35. Chemical Impacts of the Microbiome Across Scales Reveal Novel Conjugated Bile Acids
    Robert A. Quinn, Alison F. Vrbanac, Alexey V. Melnik, Kathryn A. Patras, Mitchell P. Christy, Andrew T. Nelson, Alexander A. Aksenov, Anupriya Tripathi, Greg C. Humphrey, Ricardo Silva et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  36. Sputum Microbiota Compositions Correlate With Metabolome and Clinical Outcomes of COPD‐Bronchiectasis Association: A Prospective Cohort Study
    Zhen‐feng He, Xiaoxian Zhang, Cui‐xia Pan, Xin‐zhu Yi, Yan Huang, Chun‐lan Chen, Shanshan Zha, Lai‐jian Cen, Han‐qin Cai, Lei Yang et al. · 2025 · Exploration
  37. Observation of intestinal flora diversity with the parasites infection process in a nonlethal malaria model of BALB/c mice induced by Plasmodium yoelii 17XNL strain
    Wei Guan, Daoxiu Xu, Shuguo Yang, Yanqing Zhao, Yiting Xie, Min Lin, Yaqun Liu, Yuzhong Zheng, Jian Li · 2023 · Decoding Infection and Transmission
  38. Methods and Techniques Used for Obtaining and Identifying of Microbial Low Molecular Weight Cellular Compounds, Metabolites and Signaling Molecules
    Shenderov Ba, Alexander V. Sinitsa, Mikhail M. Zakharchenko, Christine Lang · 2020 · Springer eBooks
  39. Introducing Metabolomics
    Sumira Jan, Parvaiz Ahmad · 2019 · Elsevier eBooks
  40. Prebiotic Microcapsule-Encapsulated Pterostilbene Alleviates Ulcerative Colitis by Regulating the Intestinal Microenvironment and Activating AHR/IL-22 Pathway
    Huanyu Li, Ziwei Yang, Chuanyu Zhang, Xueyong Wei, Wenjing Wang, Ting Bai, Zhichao Deng, Bowen Gao, Manli Cui, Weixuan Jing et al. · 2025 · Engineering
  41. Network-Based Multiomic Nutrient-Associated Predictive Models for Inflammatory Bowel Disease
    Martine Saint-Cyr, Evaniya Shakya, Janet Siebert, Emily B. Hill, Nancy F. Krebs, Edwin F. de Zoeten, Sarah Jean Borengasser · 2025 · Current Developments in Nutrition
  42. Glyoxylate supplementation ameliorates colitis associated colon cancer progression
    Nabendu Murmu, P. Ghosh, Akhileshwar Namani, Tapas Patra · 2024 · Journal of Cellular Physiology
  43. The Composition and Functions of Human Gut Symbiotic Microbiota
    Shenderov Ba, Alexander V. Sinitsa, Mikhail M. Zakharchenko, Christine Lang · 2020 · Springer eBooks
  44. Psychobiotics
    Sabrina Mörkl, Mary Butler, Franziska Cichini, John F. Cryan, Timothy G. Dinan · 2020 · Oxford University Press eBooks
  45. Germ-free Mice Technology: Opportunity for Future Research
    Ashish Jain, Anand Maurya · 2022 · Nutritional neurosciences
  46. Differential Modulation of Mouse Intestinal Organoids with Fecal Luminal Factors from Obese, Allergic, Asthmatic Children
    Samir Córdova, Mireia Tena‐Garitaonaindia, Ana I. Álvarez‐Mercado, Reyes Gámez‐Belmonte, María Amelia Gómez Llorente, Fermín Sánchez de Medina, Ana Martínez‐Cañavate, Olga Martínez‐Augustin, Carolina Gómez‐Llorente · 2024 · International Journal of Molecular Sciences
  47. The metabolic role of the microbiota
    Wiley Barton, Fergus Shanahan, Paul D. Cotter, Órla O’Sullivan · 2015 · Clinical Liver Disease
  48. Messengers from the microbiota
    Fyza Y. Shaikh, Cynthia L. Sears · 2020 · Science
  49. Human Endogenous Natural Products
    Yingjie Bai, Liyun Zhang, Xiaoguang Lei · 2021 · Fortschritte der Chemie Organischer Naturstoffe/Fortschritte der Chemie organischer Naturstoffe/Progress in the chemistry of organic natural products
  50. Microbiota, Liver Diseases, and Alcohol
    Anne‐Marie Cassard, Philippe Gérard, Gabriel Perlemuter · 2018 · ASM Press eBooks
  51. Regulation of Host Chromatin by Bacterial Metabolites
    Sridhar Mani · 2016 · Elsevier eBooks
  52. The Community Ecology of Microbial Molecules
    Robert A. Quinn, Theodore Alexandrov · 2014 · Journal of Chemical Ecology
  53. The therapeutic prospect of crosstalk between prokaryotic and eukaryotic organisms in the human gut
    Murad A. Mubaraki, Mohammad Ahmad, Taghreed A. Hafiz, Mohammed Ali M. Marie · 2018 · FEMS Microbiology Ecology
  54. Patent ductus arterious and increased conjugated bilirubin in the second week after birth are independent risk factors for necrotizing enterocolitis in preterm infants: an observational study
    Xiaoya Han, Shudong Cui · 2023 · BMC Pediatrics
  55. Alteration of gut microbiota in Henoch-Schönlein purpura children with gastrointestinal involvement
    Ye Li, Jiang Xue, Zhaohua Zhang, Wei Wang, Yulong Wang, Weiquan Zhang · 2024 · Irish Journal of Medical Science (1971 -)
  56. Comparative Analysis of Microbiological Profiles and Antibiotic Resistance Genes in Subjects with Colorectal Cancer and Healthy Individuals
    Jun Li, Yanyun Zhu, Qing Chang, Yuan Gong, Jun Wan, Shiping Xu · 2025 · Polish Journal of Microbiology
  57. The microbiome as a target for endocrine disruptors: Novel chemicals may disrupt androgen and microbiome-mediated autoimmunity
    Michael E. Baker · 2014 · Endocrine Disruptors
  58. Metabolic Relationship Between the Host and Its Gut Microbiota
    Shenderov Ba, Alexander V. Sinitsa, Mikhail M. Zakharchenko, Christine Lang · 2020 · Springer eBooks
  59. Microbiomes and Holobionts
    Derek Skillings, Katarzyna B. Hooks · 2018 · Elsevier eBooks
  60. Plasticity of gene expression in the nervous system by exposure to environmental odorants that inhibit HDACs
    Sachiko Haga‐Yamanaka, Rogelio Nuñez‐Flores, Christi Ann Scott, Sarah Perry, Stephanie Turner Chen, Crystal G. Pontrello, Meera Goh Nair, Anandasankar Ray · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  61. Exercise and the Brain–Gut Axis
    Douglas Buchmann Godinho, Michele Rechia Fighera, Luiz Fernando Freire Royes · 2024 · Elsevier eBooks
  62. Metabolomics Approaches for Microbiome Analysis
    Susanta Sinha Roy, Smrita Singh · 2025 · Springer eBooks
  63. Bupropion administration significantly impacts the gut microbiome, serum metabolites, and immune factors in chronic stress depression rats
    Jialin Li, Weijie Zhang, Xuena Li, Zongbao Liu, Yan He · 2025 · Journal of Affective Disorders
  64. What is the impact of the virome and mycobiome on female reproductive tract health? A systematic scoping review
    Ying Liu, Xingya Liao, Qimeng Chen, Hongyan Wang, Hualei Dai · 2026 · Frontiers in Immunology
  65. Short-chain fatty acid–producing probiotics: an effective approach for modulating gut dysbiosis and mitigating inflammatory responses
    Mehran Mahooti, Fatemeh Safaei, Elahe Abdolalipour, Ghazale Ahmadbeigi, Hadiseh Shokouhi, Tina Fallah, Davood Zare · 2026 · Microbial Pathogenesis
  66. A smart nutrition system for vitamin B 12 deficiency management from sensing to precision intervention
    Yiting Tang, Xiaodong Zheng, Fujie Yan · 2026 · Critical Reviews in Food Science and Nutrition
  67. Remodelling of the gut virome after long-term fasting
    Natalie Falshaw, Quinten R. Ducarmon, Alexandra King, Franziska Grundler, Robin Mesnage · 2026 · npj Biofilms and Microbiomes
  68. Influence of Gut Microbiota on Hepatic Lipogenesis and Disease Pathogenesis
    Vishal Singh, Beng San Yeoh, James Mukasa Ntambi, Matam Vijay–Kumar · 2015 · Springer eBooks
  69. Molecular Language of Symbiotic Gut Microorganisms
    Shenderov Ba, Alexander V. Sinitsa, Mikhail M. Zakharchenko, Christine Lang · 2020 · Springer eBooks
  70. Microbiome studies and twin research
    Joohon Sung, Hang A Park, Soo Ji Lee · 2022 · Elsevier eBooks
  71. The therapeutic role of microbial metabolites in human health and diseases
    Nivedita Manoharan, Rajeshwari Parasuraman, Dheepthi Jayamurali, Sathya Narayanan Govindarajulu · 2023 · Elsevier eBooks
  72. You Need Guts to Make New Neurons
    Susanne A. Wolf, Daniele Mattei · 2017 · Current Behavioral Neuroscience Reports
  73. More Than a Gut Feeling: Emerging Roles of the Microbiome in the Pathophysiology and Treatment of Depression
    Jane Allyson Foster · 2019 · Elsevier eBooks
  74. СОСТОЯНИЕ КИШЕЧНОЙ МИКРОФЛОРЫ ПРИ ТУБЕРКУЛЕЗЕ, "Вестник Центрального научно-исследовательского института туберкулеза"
    О. Г. Комиссарова, Виолетта Андреевна Шорохова, Р. Ю. Абдуллаев · 2021 · Вестник ЦНИИТ
  75. Conclusion
    Shenderov Ba, Alexander V. Sinitsa, Mikhail M. Zakharchenko, Christine Lang · 2020 · Springer eBooks
  76. Gut Dysbacteriosis Is Associated with an Imbalanced Cytokines Network in Women with Unexplained Miscarriage
    Yongjie Liu, Hainan Chen, Dan Chen, Liping Feng, Jun Zhang · 2020
  77. Gut microbiota of the rice and corn strains of Spodoptera frugiperda: diversity and function
    Nathalia Cavichiolli de Oliveira · 2021 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
  78. Microbiome-metabolome interactions predict host phenotype
    Oshrit Shtossel, Omry Koren, Iris Shai, Ehud Rinott, Yoram Louzoun · 2022 · Research Square
  79. Editorial: Targeting the microbiota to attenuate chronic inflammation
    Elena Moreno, Marius Trøseid, Ivan Vujkovic-Cvijin, Giulia Carla Marchetti, Laura Martín‐Pedraza, Sergio Serrano Villar · 2023 · Frontiers in Immunology
  80. Nonalcoholic Components of Wine and Atherosclerotic Cardiovascular Disease
    A O’Connor, GEORGES M. HALPERN, Rosemary L. Walzem · 2016 · Springer eBooks
  81. Effects of dietary fermentable material on innate and adaptive immune measures in male and female rats under resting and immunized conditions
    Padmaja Shastri · 2015 · e-scholar@UOIT (University of Ontario Institute of Technology)
  82. Mapping interactions of microbial metabolites and human receptors
    Dominic A. Colosimo, Jeffrey A. Kohn, Peter M. Luo, Sun Murray Han, Amanda J. Pickard, Arka Rao, Justin R. Cross, Louis J. Cohen, Sean F. Brady · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  83. Chemistry and Enzymology Encoded by the Human Microbiome
    Emilee E. Shine, Phu-Khat Nwe, Jason M. Crawford · 2019 · Elsevier eBooks
  84. Aşılar ve Mikrobiyota
    Melda Çelik, Sıddıka Songül Yalçın · 2019 · Turkish Journal of Pediatric Disease
  85. Biophysics applications in drug discovery: Working toward a new integrative model
    Juan Bueno · 2020 · Elsevier eBooks
  86. Thermodynamics of secondary metabolism: The triumph of living systems
    Juan Bueno · 2020 · Elsevier eBooks
  87. Prospects in the Field of Intended-Use Metabiotics Creation
    Shenderov Ba, Alexander V. Sinitsa, Mikhail M. Zakharchenko, Christine Lang · 2020 · Springer eBooks
  88. The Digestive Function of Human Gut Microbiota
    Shenderov Ba, Alexander V. Sinitsa, Mikhail M. Zakharchenko, Christine Lang · 2020 · Springer eBooks
  89. Molecular Approaches for Analyzing Organismal and Environmental Interactions
    Stephanie Fern Hudon · 2020
  90. The brain-gut-microbiota axis
    J. Neu · 2021 · Elsevier eBooks
  91. References
    2021 · Elsevier eBooks
  92. Gut Dysbacteriosis Is Associated with an Imbalanced Cytokines Network in Women with Unexplained Miscarriage
    Yongjie Liu, Hainan Chen, Dan Chen, Liping Feng, Jun Zhang · 2020
  93. Gut Microbiota in Inflammatory Bowel Disease: Still More Questions Than Answers
    Tarkan Karakan · 2022 · Journal of Enterocolitis
  94. Ecological Dynamics Imposes Fundamental Challenges in Microbial Source Tracking
    Xu‐Wen Wang, Lu Han Wu, Lei Dai, Xiaole Yin, Tong Zhang, Scott T. Weiss, Yang‐Yu Liu · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  95. Reviewer #1 (Public Review): Plasticity of gene expression in the nervous system by exposure to environmental odorants that inhibit HDACs
    2023 · eLife
  96. eLife Assessment: Plasticity of gene expression in the nervous system by exposure to environmental odorants that inhibit HDACs
    Mani Ramaswami · 2023 · eLife
  97. Reviewer #2 (Public Review): Plasticity of gene expression in the nervous system by exposure to environmental odorants that inhibit HDACs
    2023 · eLife
  98. Plasticity of gene expression in the nervous system by exposure to environmental odorants that inhibit HDACs
    Sachiko Haga‐Yamanaka, Rogelio Nuñez‐Flores, Christi Ann Scott, Sarah Perry, Stephanie Turner Chen, Crystal G. Pontrello, Meera Goh Nair, Anandasankar Ray · 2023 · eLife
  99. EFFECT OF INFLAMMATORY FACTORS IN THE PATHOGENESIS OF CHRONIC RHINOSINUSITIS
    Andrzej Wojdas · 2023 · The Polish Journal of Aviation Medicine Bioengineering and Psychology
  100. Gut Microbiome: Perspectives and Challenges in Human Health
    Neha Salaria, Neeraj, Junaid Furhan, Rajesh Kumar · 2023 · Springer eBooks