The DOI matches its Crossref record; 101 of the 102 references it cites were found in a registry or an index.
Endosymbiotic theory for organelle origins
Abstract
Endosymbiotic theory goes back over 100 years. It explains the similarity of chloroplasts and mitochondria to free-living prokaryotes by suggesting that the organelles arose from prokaryotes through (endo)symbiosis. Gene trees provide important evidence in favour of symbiotic theory at a coarse-grained level, but the finer we get into the details of branches in trees containing dozens or hundreds of taxa, the more equivocal evidence for endosymbiotic events sometimes becomes. It seems that either the interpretation of some endosymbiotic events are wrong, or something is wrong with the interpretations of some gene trees having many leaves. There is a need for evidence that is independent of gene trees and that can help outline the course of symbiosis in eukaryote evolution. Protein import is the strongest evidence we have for the single origin of chloroplasts and mitochondria. It is probably also the strongest evidence we have to sort out the number and nature of secondary endosymbiotic events that have occurred in evolution involving the red plastid lineage. If we relax our interpretation of individual gene trees, endosymbiotic theory can tell us a lot.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“CASH lineages have plastids related to red algae, but the mechanisms by which they were acquired and the ancestors involved remain unclear [1–3].”
From Decontamination, pooling and dereplication of the 678 samples of the Marine Microbial Eukaryote Transcriptome Sequencing Project (2021) · cites this paper as [1]
Citations
Cites
Lateral gene transfer and the nature of bacterial innovation
Ochman, H., Lawrence, J. G., & Groisman, E. A. (2000) · Nature · doi:10.1038/35012500 · Cited by 3,816
Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes
Timmis, J. N., Ayliffe, M., Huang, C. Y., & Martin, W. F. (2004) · Nature Reviews Genetics · doi:10.1038/nrg1271 · Cited by 1,603
Self-citationGenome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatis
Stephens, R. S., Kalman, S., Lammel, C. J., Fan, J., Marathe, R., Aravind, L., Mitchell, W., Olinger, L., Tatusov, R. L., Zhao, Q., et al. (1998) · Science · doi:10.1126/science.282.5389.754 · Cited by 1,563
The energetics of genome complexity.
Lane, N., & Martin, W. (2010) · Nature · doi:10.1038/nature09486 · Cited by 1,289
Self-citationMartin, W., Rujan, T., Richly, E., Hansen, A., Cornelsen, S., Lins, T., Leister, D., Stoebe, B., Hasegawa, M., & Penny, D. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.182432999 · Cited by 1,178 · cited 2×
“Moreover, the ‘second major’ [64], and we stress, apparent ‘source’ of prokaryotic genes in plants is not chlamydia, it is alphaproteobacteria, followed by gammaproteobacteria, then actinobacteria, deltaproteobacteria, bacilli, bacteroidetes, and betaproteobacteria, behind which chlamydiae range as another meagre appa…”
BackgroundSelf-citationEstimating the timing of early eukaryotic diversification with multigene molecular clocks
Parfrey, L. W., Lahr, D. J. G., Knoll, A. H., & Katz, L. A. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1110633108 · Cited by 899 · cited 1×
“2 billion years ago [29].”
Isoprenoid biosynthesis: The evolution of two ancient and distinct pathways across genomes
Lange, B. M., Rujan, T., Martin, W., & Croteau, R. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.240454797 · Cited by 881
Self-citationBiochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes
Müller, M., Mentel, M., van Hellemond, J. J., Henze, K., Woehle, C., Gould, S. B., Yu, R.-Y., van der Giezen, M., Tielens, A. G. M., & Martin, W. F. (2012) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.05024-11 · Cited by 838
Self-citationGene transfer to the nucleus and the evolution of chloroplasts
Martin, W., Stoebe, B., Goremykin, V., Hansmann, S., Hasegawa, M., & Kowallik, K. V. (1998) · Nature · doi:10.1038/30234 · Cited by 772 · cited 2×
“In a study of nine plastid genomes only 11 out of 42 genes recovered the consensus tree [54].”
BackgroundSelf-citationGene Transfer from Organelles to the Nucleus: How Much, What Happens, and Why?1
Martin, W., & Herrmann, R. G. (1998) · Plant Physiology · doi:10.1104/pp.118.1.9 · Cited by 704
Self-citation
Flagged first, then by citations
1 of the 102 references couldn’t be matched to a known paper.
Research works printed but not linked: 3
- Mereschkowsky, 1905, Über Natur und Ursprung der Chromatophoren im Pflanzenreiche, Biol Centralbl, 25, 593
- Martin, 2012, Modern endosymbiotic theory: getting lateral gene transfer into the equation, J Endocyt Cell Res, 23, 1
- Melkonian, 1996, Phylogeny of photosynthetic protists and their plastids, Verh Dtsch Zool Ges, 89, 71
Cited by
Sorted by citations
Endosymbiosis and Eukaryotic Cell Evolution
Archibald, J. M. (2015) · Current Biology · doi:10.1016/j.cub.2015.07.055 · Cited by 654
Endosymbiotic theories for eukaryote origin
Martin, W. F., Garg, S., & Zimorski, V. (2015) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2014.0330 · Cited by 583
Self-citationQuality control of the mitochondrial proteome
Song, J., Herrmann, J. M., & Becker, T. (2020) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-020-00300-2 · Cited by 501
Lamb, R., Ózsvári, B., Lisanti, C., Tanowitz, H. B., Howell, A., Martinez‐Outschoorn, U., Sotgia, F., & Lisanti, M. P. (2015) · Oncotarget · doi:10.18632/oncotarget.3174 · Cited by 484
Peiris-Pagès, M., Martinez-Outschoorn, U. E., Pestell, R. G., Sotgia, F., & Lisanti, M. P. (2016) · Breast Cancer Research · doi:10.1186/s13058-016-0712-6 · Cited by 465
Metadata
- Authors
- Zimorski, V., Ku, C., Martin, W. F., & Gould, S. B.
- Affiliations
- Heinrich Heine University Düsseldorf (DE)
- Venue
- Current Opinion in Microbiology
- Publisher
- Elsevier BV
- Published
- 2014-12
- Volume
- 22
- Pages
- 38-48
- ISSN
- 1369-5274 (ISSN-L)
- OpenAlex
- W2060804705
- Semantic Scholar
- 13afd83e6ec98416549a7dd120f485251fbb892d
- Cited by
- 453
- References
- 102
- Citations by year
- 2026: 27 · 2025: 50 · 2024: 53 · 2023: 23 · 2022: 44 · 2021: 40 · 2020: 36 · 2019: 39 · 2018: 35 · 2017: 39 · 2016: 30 · 2015: 31 · 2014: 6
- FWCI
- 3.33
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- Locations
- Current Opinion in Microbiology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- European Research Council (232975)
- Deutsche Forschungsgemeinschaft (GO1825/4-1)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Protist diversity and phylogeny
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Photosynthetic Processes and Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
- Keywords
- endosymbiotic theory, organelle origin, chloroplasts, mitochondria, secondary endosymbiosis, gene trees, protein import, eukaryotic evolution, symbiosis
- MeSH terms
- Adenosine Triphosphate, Cyanobacteria, Eukaryotic Cells, Mitochondria, Prokaryotic Cells, Symbiosis, Organelles, Protein Transport
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review