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Distinct Argonaute-Mediated 22G-RNA Pathways Direct Genome Surveillance in the C. elegans Germline

Open access
Gu, Weifeng, Shirayama, Masaki, Conte, Darryl, Vasale, Jessica, Batista, Pedro J., Claycomb, Julie M., Moresco, James J., Youngman, Elaine M., Keys, Jennifer, Stoltz, Matthew J., Chen, Chun-Chieh G., Chaves, Daniel A., Duan, Shenghua, Kasschau, Kristin D., Fahlgren, Noah, Yates, John R., Mitani, Shohei, Carrington, James C., Mello, Craig C.·2009·Molecular Cell

Abstract

Summary Endogenous small RNAs (endo-siRNAs) interact with Argonaute (AGO) proteins to mediate sequence-specific regulation of diverse biological processes. Here, we combine deep-sequencing and genetic approaches to explore the biogenesis and function of endo-siRNAs in C. elegans. We describe conditional alleles of the dicer-related helicase, drh-3, that abrogate both RNA interference and the biogenesis of endo-siRNAs, called 22G-RNAs. DRH-3 is a core component of RNA-dependent RNA polymerase (RdRP) complexes essential for several distinct 22G-RNA systems. We show that in the germ-line, one system is dependent on worm-specific AGOs, including WAGO-1, which localizes to germ-line nuage structures called P-granules. WAGO-1 silences certain genes, transposons, pseudogenes and cryptic loci. Finally, we demonstrate that components of the nonsense-mediated decay pathway function in at least one WAGO-mediated surveillance pathway. These findings broaden our understanding of the biogenesis and diversity of 22G-RNAs and suggest novel regulatory functions for small RNAs.

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Metadata

Authors
Gu, W., Shirayama, M., Conte, D., Vasale, J., Batista, P. J., Claycomb, J. M., Moresco, J. J., Youngman, E. M., Keys, J., Stoltz, M. J., Chen, C.-C. G., Chaves, D. A., Duan, S., Kasschau, K. D., Fahlgren, N., Yates, J. R., Mitani, S., Carrington, J. C., & Mello, C. C.
Venue
Molecular Cell
Publisher
Elsevier BV
Published
2009-10
Volume
36
Issue
2
Pages
231-244
ISSN
1097-2765 (ISSN-L)
OpenAlex
W1995048848
Cited by
505
References
4
FWCI
10.56
Type
journal article
Language
en
Open access
bronze

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Gu, W., Shirayama, M., Conte, D., Vasale, J., Batista, P. J., Claycomb, J. M., Moresco, J. J., Youngman, E. M., Keys, J., Stoltz, M. J., Chen, C.-C. G., Chaves, D. A., Duan, S., Kasschau, K. D., Fahlgren, N., Yates, J. R., Mitani, S., Carrington, J. C., & Mello, C. C. (2009). Distinct Argonaute-Mediated 22G-RNA Pathways Direct Genome Surveillance in the C. elegans Germline. Molecular Cell. https://doi.org/10.1016/j.molcel.2009.09.020

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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

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