The DOI matches its Crossref record; 10 of the 10 references it cites were found in a registry or an index.
A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria
Open accessAbstract
Phenotyping has become the rate-limiting step in using large-scale genomic data to understand and improve agricultural crops. Here, the Bellwether Phenotyping Platform for controlled-environment plant growth and automated multimodal phenotyping is described. The system has capacity for 1140 plants, which pass daily through stations to record fluorescence, near-infrared, and visible images. Plant Computer Vision (PlantCV) was developed as open-source, hardware platform-independent software for quantitative image analysis. In a 4-week experiment, wild Setaria viridis and domesticated Setaria italica had fundamentally different temporal responses to water availability. While both lines produced similar levels of biomass under limited water conditions, Setaria viridis maintained the same water-use efficiency under water replete conditions, while Setaria italica shifted to less efficient growth. Overall, the Bellwether Phenotyping Platform and PlantCV software detected significant effects of genotype and environment on height, biomass, water-use efficiency, color, plant architecture, and tissue water status traits. All ∼ 79,000 images acquired during the course of the experiment are publicly available.
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Cites
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Cited by
Yang, W., Feng, H., Zhang, X., Zhang, J., Doonan, J. H., Batchelor, W. D., Xiong, L., & Yan, J. (2020) · Molecular Plant · doi:10.1016/j.molp.2020.01.008 · Cited by 961
Deep Plant Phenomics: A Deep Learning Platform for Complex Plant Phenotyping Tasks
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PlantCV v2: Image analysis software for high-throughput plant phenotyping
Gehan, M. A., Fahlgren, N., Abbasi, A., Berry, J. C., Callen, S. T., Chavez, L., Doust, A. N., Feldman, M. J., Gilbert, K. B., Hodge, J. G., et al. (2017) · PeerJ · doi:10.7717/peerj.4088 · Cited by 365
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“Many types of plant image processing software, such as plant computer vision (PlantCV), 80,81 Image Harvest, and HTPheno, 82 can help with these tasks and extract features from images by automating complex techniques such as histogram thresholding and color analysis.”
Method
Metadata
- Authors
- Fahlgren, N., Feldman, M., Gehan, M. A., Wilson, M. S., Shyu, C., Bryant, D. W., Hill, S. T., McEntee, C. J., Warnasooriya, S. N., Kumar, I., Ficor, T., Turnipseed, S., Gilbert, K. B., Brutnell, T. P., Carrington, J. C., Mockler, T. C., & Baxter, I.
- Venue
- Molecular Plant
- Publisher
- Elsevier BV
- Published
- 2015-10
- Volume
- 8
- Issue
- 10
- Pages
- 1520-1535
- ISSN
- 1674-2052 (ISSN-L)
- OpenAlex
- W1968060974
- Cited by
- 281
- References
- 10
- FWCI
- 24.45
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Fahlgren, N., Feldman, M., Gehan, M. A., Wilson, M. S., Shyu, C., Bryant, D. W., Hill, S. T., McEntee, C. J., Warnasooriya, S. N., Kumar, I., Ficor, T., Turnipseed, S., Gilbert, K. B., Brutnell, T. P., Carrington, J. C., Mockler, T. C., & Baxter, I. (2015). A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria. Molecular Plant. https://doi.org/10.1016/j.molp.2015.06.005
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