Investigations of pyrimidine dimer glycosylases—A paradigm for DNA base excision repair enzymology
Abstract
The most prevalent forms of cancer in humans are the non-melanoma skin cancers, with over a million new cases diagnosed in the United States annually. The portions of the body where these cancers arise are almost exclusively on the most heavily sun-exposed tissues. It is now well established that exposure to ultraviolet light (UV) causes not only damage to DNA that subsequently generates mutations and a transformed phenotype, but also UV-induced immunosuppression. Human cells have only one mechanism to remove the UV-induced dipyrimidine DNA photoproducts: nucleotide excision repair (NER). However, simpler organisms such as bacteria, bacteriophages and some eukaryotic viruses contain up to three distinct mechanisms to initiate the repair of UV-induced dipyrimidine adducts: NER, base excision repair (BER) and photoreversal. This review will focus on the biology and the mechanisms of DNA glycosylase/AP lyases that initiate BER of cis-syn cyclobutane pyrimidine dimers. One of these enzymes, the T4 pyrimidine dimer glycosylase (T4-pdg), formerly known as T4 endonuclease V has served as a model in the study of this entire class of enzymes. It was the first DNA repair enzyme: (1) for which a biologically significant processive nicking activity was demonstrated; (2) to have its active site determined, (3) to have its crystal structure solved, (4) to be shown to carry out nucleotide flipping, and (5) to be used in human clinical trials for disease prevention.
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Clinical trials using a topically applied liposomal formulation with bacteriophage T4 CPD damage removal enzyme T4 endonuclease V resulted in lowered actinic keratoses and basal-cell carcinoma incidence in XP patients.
“Clinical trials with the use of topically applied liposomal formulation with bacteriophage T4 CPD damage removal enzyme – T4 endonuclease V resulted in lowered actinic keratoses and basal-cell carcinoma incidence in XP-patients [181,182].”
From Focus on UV-Induced DNA Damage and Repair—Disease Relevance and Protective Strategies (2020) · cites this paper as [182]
UV irradiation induces DNA photoproducts, including CPD and 6-4 PPs.
“UV irradiation can induce DNA photoproducts. Cyclobutane pyrimidine dimers (CPD) and pyrimidine (6-4) pyrimidone photoproducts (6-4 PPs) have been completely isolated and characterized as UV-induced photodimers (14–16).”
From Melanocyte-stimulating hormone directly enhances UV-Induced DNA repair in keratinocytes by a xeroderma pigmentosum group A-dependent mechanism (2010) · cites this paper as [16]
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The roles of Rad16 and Rad26 in repairing repressed and actively transcribed genes in yeast
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Self-citationDemethylation initiated by ROS1 glycosylase involves random sliding along DNA
Ponferrada-Marín, M. I., Roldán‐Arjona, T., & Ariza, R. R. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks894 · Cited by 27 · see citing works
Yeast Elc1 plays an important role in global genomic repair but not in transcription coupled repair
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Rpb1 Sumoylation in Response to UV Radiation or Transcriptional Impairment in Yeast
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Modulation of Rad26- and Rpb9-mediated DNA Repair by Different Promoter Elements
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Modulation of UVB-induced Carcinogenesis by Activation of Alternative DNA Repair Pathways
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Modulation of the processive abasic site lyase activity of a pyrimidine dimer glycosylase
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Self-citationMCAM/MUC18 REGULATES MELANOMA PROGRESSION BY MODULATING THE EXPRESSION OF ID-1
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1. Chemistry of Melanins and other pigments
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Enzymes in the Base Excision Repair Pathway as Targets for Small Molecule Mediated Therapeutics
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Self-citation
- Authors
- Lloyd, R. S.
- Affiliations
- Oregon Health & Science University (US)
- Corresponding author
- Lloyd, R. Stephen
- ORCID
- Lloyd, R. Stephen
- Venue
- Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis
- Publisher
- Elsevier BV
- Published
- 2005-09
- Volume
- 577
- Issue
- 1-2
- Pages
- 77-91
- ISSN
- 0027-5107 (ISSN-L)
- 1386-1964
- OpenAlex
- W2077403011
- Cited by
- 37
- References
- 89
- Citations by year
- 2023: 1 · 2022: 1 · 2021: 3 · 2020: 1 · 2019: 1 · 2018: 2 · 2016: 1 · 2012: 2
- FWCI
- 0.27
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- Locations
- Mutation research. Fundamental and molecular mechanisms of mutagenesis (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health (ES04091)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
- Physical Sciences › Materials Science › Materials Chemistry › Enzyme Structure and Function
- Keywords
- base excision repair, T4 endonuclease V, DNA glycosylase, AP lyase, UV-induced DNA damage, nucleotide excision repair, photoreversal, non-melanoma skin cancer, nucleotide flipping, active site, crystal structure
- MeSH terms
- Base Sequence, Binding Sites, DNA Repair, Models, Molecular, Dimerization, DNA Glycosylases
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