Lost in localization — But found with foci?!
Open accessAbstract
Commentaries by Derrfuss and Mar [Derrfuss, J., Mar, R.A., 2009. Lost in localization: the need for a universal coordinate database. Neuroimage (doi:10.1016/j.neuroimage.2009.01.053).], Nielsen [Nielsen, F.A., 2009. Lost in localization: a solution with neuroinformatics 2.0? Neuroimage.], Hamilton [Hamilton, A., 2009. Lost in localization: a minimal middle way. Neuroimage.], and Laird and Fox [Laird, A.R., Fox, P.T., 2009 Lost in localization? The focus is meta-analysis. Neuroimage.] agree on the need for a comprehensive database of published stereotaxic coordinates but offer diverse views on how best to achieve this objective. Here, I summarize recent enhancements to the SumsDB database that increase its utility and decrease the impediments to data submission, thereby making it attractive as a resource that can approach comprehensive content in a realistic time frame.
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Previous neuroimaging synthesis approaches relied heavily on researchers' manual efforts.
“previous approaches have relied heavily on researchers’ manual efforts (e.g., 7,8)”
From Large-scale automated synthesis of human functional neuroimaging data. (2011) · cites this paper as [7]
Automatically extracted coordinates compared with manually entered SumsDB foci had sensitivity of 84% and specificity of 97%.
“we compared automatically extracted coordinates with a reference set of manually-entered foci in the SumsDB database7,9, revealing high rates of sensitivity (84%) and specificity (97%).”
From Large-scale automated synthesis of human functional neuroimaging data. (2011) · cites this paper as [7]
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Research works printed but not linked: 10
- Christ SE Van Essen DC Watson JM Brubaker LE McDermott KB 2008 The contributions of prefrontal cortex and executive control to deception: Evidence from activation likelihood estimate meta-analysis Cerebral Cortex doi 10.1093. epub PMC2693617 18980948
- Derffuss J Mar RA 2009 Lost in localization: The need for a universal coordinate database Neuroimage 10.1016/j.neuroimage.2009.01.053 19457374 · DOI · Paper page
- Gardner D Akil H Ascoli GA Bowden DM Bug W Donohue DE Goldberg DH Grafstein B Grethe JS Gupta A Halavi M Kennedy DN Marenco L Martone ME Miller P Muller HM Robert A Shepherd GM Sternberg PW Van Essen DC Williams RW 2008 The neuroscience information framework: A data and knowledge environment for neuroscience Neuroinformatics 6 149 160 18946742 PMC2661130
- Hamilton A 2009 Lost in localization: a minimal middle way Neuroimage in press 19442743
- Laird AR Fox PT 2009 Lost in localization? The focus is meta-analysis Neuroimage in press PMC2725202 19559800
- Nielsen FA 2009 Lost in localization: A solution with neuroinformatics 2.0? Neuroimage in press 19497377
- Poldrack RA Fletcher PC Henson RN Worsley KJ Brett M Nichols TE 2008 Guidelines for reporting an fMRI study Neuroimage 40 409 414 18191585 PMC2287206
- Salimi-Khorshidi G Smith SM Keltner JR Wager TD Nichols TE 2009 Meta-analysis of neuroimaging data: a comparison of image-based and coordinate-based pooling of studies Neuroimage 45 810 823 19166944
- Van Essen DC Dierker D 2007a On navigating the human cerebral cortex: response to ‘in praise of tedious anatomy’ Neuroimage 37 1050 1054 discussion 1066-1058. PMCID: PMC2045137 17766148 PMC2045137
- Van Essen DC Dierker DL 2007b Surface-based and probabilistic atlases of primate cerebral cortex Neuron 56 209 225 17964241
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Self-citationLarge-scale automated synthesis of human functional neuroimaging data.
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Yarkoni, T., Poldrack, R. A., Van Essen, D. C., & Wager, T. D. (2010) · Trends in Cognitive Sciences · doi:10.1016/j.tics.2010.08.004 · Cited by 174 · see citing works
Self-citationBezgin, G., Vakorin, V. A., van Opstal, A. J., McIntosh, A. R., & Bakker, R. (2012) · NeuroImage · doi:10.1016/j.neuroimage.2012.04.013 · Cited by 63 · see citing works
- Authors
- Van Essen, D. C.
- Venue
- NeuroImage
- Publisher
- Elsevier BV
- Published
- 2009-10
- Volume
- 48
- Issue
- 1
- Pages
- 14-17
- ISSN
- 1053-8119 (ISSN-L)
- PMC
- PMC2756522
- OpenAlex
- W1971932459
- Cited by
- 22
- References
- 0
- Citations by year
- 2015: 3 · 2014: 1 · 2013: 4 · 2012: 2
- FWCI
- 12.34
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- NeuroImage (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institute of Mental Health and Neurosciences
- National Institutes of Health
- National Institute of Mental Health (R01 MH60974, R01MH060974)
- National Institute of Biomedical Imaging and Bioengineering
- Topics
- Physical Sciences › Computer Science › Information Systems › Research Data Management Practices
- Life Sciences › Neuroscience › Cognitive Neuroscience › Functional Brain Connectivity Studies
- Social Sciences › Decision Sciences › Information Systems and Management › Scientific Computing and Data Management
- Keywords
- brain localization, neuroinformatics, meta-analysis, neuroimaging atlases
- MeSH terms
- Brain, Brain Mapping, Humans, Publishing, Information Storage and Retrieval, Databases as Topic, Internet, Access to Information
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