CRISPR-based VEGF suppression using paired guide RNAs for treatment of choroidal neovascularization
Open accessAbstract
Clustered regularly interspaced short palindromic repeats (CRISPR)-based genomic disruption of vascular endothelial growth factor A ( Vegfa ) with a single gRNA suppresses choroidal neovascularization (CNV) in preclinical studies, offering the prospect of long-term anti-angiogenesis therapy for neovascular age-related macular degeneration (AMD). Genome editing using CRISPR-CRISPR-associated endonucleases (Cas9) with multiple guide RNAs (gRNAs) can enhance gene-ablation efficacy by augmenting insertion-deletion (indel) mutations with gene truncations but may also increase the risk of off-target effects. In this study, we compare the effectiveness of adeno-associated virus (AAV)-mediated CRISPR-Cas9 systems using single versus paired gRNAs to target two different loci in the Vegfa gene that are conserved in human, rhesus macaque, and mouse. Paired gRNAs increased Vegfa gene-ablation rates in human cells in vitro but did not enhance VEGF suppression in mouse eyes in vivo . Genome editing using paired gRNAs also showed a similar degree of CNV suppression compared with single-gRNA systems. Unbiased genome-wide analysis using genome-wide unbiased identification of double-stranded breaks (DSBs) enabled by sequencing (GUIDE-seq) revealed weak off-target activity arising from the second gRNA. These findings suggest that in vivo CRISPR-Cas9 genome editing using two gRNAs may increase gene ablation but also the potential risk of off-target mutations, while the functional benefit of targeting an additional locus in the Vegfa gene as treatment for neovascular retinal conditions is unclear.
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The efficacy of gene editing treatments for anti-VEGF is limited by delivery vehicles, poor efficiency of compact Cas9 nucleases, and risk of genomic alterations from long-term Cas9 expression.
“However, the efficacy of such treatments is limited by the delivery vehicles, the poor efficiency of compact Cas9 nucleases, and the risk of genomic alterations from the long-term expression of Cas9 (46).”
From Characterization of RNA editing and gene therapy with a compact CRISPR-Cas13 in the retina (2024) · cites this paper as [46]
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GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases
Tsai, S. Q., Zheng, Z., Nguyen, N. T., Liebers, M., Topkar, V. V., Thapar, V., Wyvekens, N., Khayter, C., Iafrate, A. J., Le, L. P., et al. (2015) · Nature Biotechnology · doi:10.1038/nbt.3117 · Cited by 2,268 · see citing works
Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases
Frock, R. L., Hu, J., Meyers, R. M., Ho, Y.-J., Kii, E., & Alt, F. W. (2015) · Nature Biotechnology · doi:10.1038/nbt.3101 · Cited by 673 · see citing works
Risk of geographic atrophy in the comparison of age-related macular degeneration treatments trials
Grunwald, J. E., Daniel, E., Huang, J., Ying, G.-S., Maguire, M. G., Toth, C. A., Jaffe, G. J., Fine, S. L., Blodi, B., Klein, M. L., et al. (2014) · Ophthalmology · doi:10.1016/j.ophtha.2013.08.015 · Cited by 590 · see citing works
Chromosomal Translocations in Human Cells Are Generated by Canonical Nonhomologous End-Joining
Ghezraoui, H., Piganeau, M., Renouf, B., Renaud, J.-B., Sallmyr, A., Ruis, B., Oh, S., Tomkinson, A. E., Hendrickson, E. A., Giovannangeli, C., et al. (2014) · Molecular Cell · doi:10.1016/j.molcel.2014.08.002 · Cited by 351 · see citing works
Bhutto, I. A., McLeod, D. S., Hasegawa, T., Kim, S. Y., Merges, C., Tong, P., & Lutty, G. A. (2006) · Experimental Eye Research · doi:10.1016/j.exer.2005.05.007 · Cited by 275 · see citing works
Rakoczy, E. P., Lai, C.-M., Magno, A. L., Wikstrom, M. E., French, M. A., Pierce, C. M., Schwartz, S. D., Blumenkranz, M. S., Chalberg, T. W., Degli-Esposti, M. A., et al. (2015) · The Lancet · doi:10.1016/s0140-6736(15)00345-1 · Cited by 189 · see citing works
Aflibercept for neovascular age-related macular degeneration
Sarwar, S., Clearfield, E., Soliman, M. K., Sadiq, M. A., Baldwin, A. J., Hanout, M., Agarwal, A., Sepah, Y. J., Do, D. V., & Nguyen, Q. D. (2016) · Cochrane Database of Systematic Reviews · doi:10.1002/14651858.cd011346.pub2 · Cited by 142 · see citing works
Genome Editing Abrogates Angiogenesis in Vivo
Huang, X., Zhou, G., Wu, W., Duan, Y., Ma, G., Song, J., Xiao, R., Vandenberghe, L., Zhang, F., D’Amore, P. A., et al. (2017) · Nature Communications · doi:10.1038/s41467-017-00140-3 · Cited by 142 · see citing works
Takahashi, K., Igarashi, T., Miyake, K., Kobayashi, M., Yaguchi, C., Iijima, O., Yamazaki, Y., Katakai, Y., Miyake, N., Kameya, S., et al. (2017) · Molecular Therapy · doi:10.1016/j.ymthe.2016.10.008 · Cited by 99 · see citing works
Solomon, S. D., Lindsley, K. B., Krzystolik, M. G., Vedula, S. S., & Hawkins, B. S. (2016) · Ophthalmology · doi:10.1016/j.ophtha.2015.09.002 · Cited by 68 · see citing works
Flagged first, then by citations
Research works printed but not linked: 44
- [1]Todorich B. Yiu G. Hahn P. Current and investigational pharmacotherapeutic approaches for modulating retinal angiogenesis Expert Rev. Clin. Pharmacol. 7 2014 375 391 10.1586/17512433.2014.890047 24580084 · DOI
- [2]Paulus Y.M. Sodhi A. Anti-angiogenic therapy for retinal disease Handb. Exp. Pharmacol. 242 2017 271 307 10.1007/164_2016_78 27783271 PMC5451313 · DOI
- [3]Miller J.W. Le Couter J. Strauss E.C. Ferrara N. Vascular endothelial growth factor a in intraocular vascular disease Ophthalmology 120 2013 106 114 10.1016/j.ophtha.2012.07.038 23031671 · DOI
- [7]Campochiaro P.A. Lauer A.K. Sohn E.H. Mir T.A. Naylor S. Anderton M.C. Kelleher M. Harrop R. Ellis S. Mitrophanous K.A. Lentiviral vector gene transfer of endostatin/angiostatin for macular degeneration (GEM) study Hum. Gene Ther. 28 2017 99 111 10.1089/hum.2016.117 27710144 PMC5278797 · DOI · Paper page
- [8]Constable I.J. Pierce C.M. Lai C.M. Magno A.L. Degli-Esposti M.A. French M.A. McAllister I.L. Butler S. Barone S.B. Schwartz S.D. Phase 2a randomized clinical trial: safety and post hoc analysis of subretinal rAAV.sFLT-1 for wet age-related macular degeneration EBioMedicine 14 2016 168 175 10.1016/j.ebiom.2016.11.016 27865764 PMC5161436 · DOI · Paper page
- [10]Yiu G. Genome editing in retinal diseases using CRISPR technology Ophthalmol. Retina 2 2018 1 3 10.1016/j.oret.2017.09.015 31047294 · DOI
- [11]Yiu G. Tieu E. Nguyen A.T. Wong B. Smit-McBride Z. Genomic disruption of VEGF-A expression in human retinal pigment epithelial cells using CRISPR-cas9 endonuclease Invest. Ophthalmol. Vis. Sci. 57 2016 5490 5497 10.1167/iovs.16-20296 27768202 PMC5072539 · DOI
- [12]Chung S.H. Mollhoff I.N. Nguyen U. Nguyen A. Stucka N. Tieu E. Manna S. Meleppat R.K. Zhang P. Nguyen E.L. Factors impacting efficacy of AAV-mediated CRISPR-based genome editing for treatment of choroidal neovascularization Mol. Ther. Methods Clin. Dev. 17 2020 409 417 10.1016/j.omtm.2020.01.006 32128346 PMC7044682 · DOI
- [14]Kim E. Koo T. Park S.W. Kim D. Kim K. Cho H.Y. Song D.W. Lee K.J. Jung M.H. Kim S. In vivo genome editing with a small Cas9 orthologue derived from Campylobacter jejuni Nat. Commun. 8 2017 14500 10.1038/ncomms14500 28220790 PMC5473640 · DOI · Paper page
- [15]Holmgaard A. Askou A.L. Benckendorff J.N.E. Thomsen E.A. Cai Y. Bek T. Mikkelsen J.G. Corydon T.J. In vivo knockout of the Vegfa gene by lentiviral delivery of CRISPR/Cas9 in mouse retinal pigment epithelium cells Mol. Ther. Nucleic Acids 9 2017 89 99 10.1016/j.omtn.2017.08.016 29246327 PMC5626917 · DOI
- [16]Ling S. Yang S. Hu X. Yin D. Dai Y. Qian X. Wang D. Pan X. Hong J. Sun X. Lentiviral delivery of co-packaged Cas9 mRNA and a Vegfa-targeting guide RNA prevents wet age-related macular degeneration in mice Nat. Biomed. Eng. 5 2021 144 156 10.1038/s41551-020-00656-y 33398131 · DOI
- [17]Tsai Y.T. Wu W.H. Lee T.T. Wu W.P. Xu C.L. Park K.S. Cui X. Justus S. Lin C.S. Jauregui R. Clustered regularly interspaced short palindromic repeats-based genome surgery for the treatment of autosomal dominant retinitis pigmentosa Ophthalmology 125 2018 1421 1430 10.1016/j.ophtha.2018.04.001 29759820 PMC6109419 · DOI · Paper page
- [18]Maeder M.L. Stefanidakis M. Wilson C.J. Baral R. Barrera L.A. Bounoutas G.S. Bumcrot D. Chao H. Ciulla D.M. DaSilva J.A. Development of a gene-editing approach to restore vision loss in Leber congenital amaurosis type 10 Nat. Med. 25 2019 229 233 10.1038/s41591-018-0327-9 30664785 · DOI · Paper page
- [19]Keyt B.A. Berleau L.T. Nguyen H.V. Chen H. Heinsohn H. Vandlen R. Ferrara N. The carboxyl-terminal domain (111-165) of vascular endothelial growth factor is critical for its mitogenic potency J. Biol. Chem. 271 1996 7788 7795 10.1074/jbc.271.13.7788 8631822 · DOI
- [21]Kim K. Park S.W. Kim J.H. Lee S.H. Kim D. Koo T. Kim K.E. Kim J.H. Kim J.S. Genome surgery using Cas9 ribonucleoproteins for the treatment of age-related macular degeneration Genome Res. 27 2017 419 426 10.1101/gr.219089.116 28209587 PMC5340969 · DOI
- [22]Huang X. Zhou G. Wu W. Ma G. D'Amore P.A. Mukai S. Lei H. Editing VEGFR2 blocks VEGF-induced activation of akt and tube formation Invest. Ophthalmol. Vis. Sci. 58 2017 1228 1236 10.1167/iovs.16-20537 28241310 PMC5338630 · DOI
- [23]Yamazaki Y. Morita T. Molecular and functional diversity of vascular endothelial growth factors Mol. Divers. 10 2006 515 527 10.1007/s11030-006-9027-3 16972015 · DOI
- [24]Rosen L.S. Clinical experience with angiogenesis signaling inhibitors: focus on vascular endothelial growth factor (VEGF) blockers Cancer Control 9 2002 36 44 10.1177/107327480200902s05 11965229 · DOI
- [26]Carlevaro M.F. Cermelli S. Cancedda R. Descalzi Cancedda F. Vascular endothelial growth factor (VEGF) in cartilage neovascularization and chondrocyte differentiation: auto-paracrine role during endochondral bone formation J. Cell Sci. 113 2000 59 69 10.1242/jcs.113.1.59 10591625 · DOI
- [27]Saishin Y. Saishin Y. Takahashi K. Silva R.L.e. Hylton D. Rudge J.S. Wiegand S.J. Campochiaro P.A. VEGF-TRAP(R1R2) suppresses choroidal neovascularization and VEGF-induced breakdown of the blood-retinal barrier J. Cell Physiol. 195 2003 241 248 10.1002/jcp.10246 12652651 · DOI
- [28]Shah C.P. Garg S.J. Vander J.F. Brown G.C. Kaiser R.S. Haller J.A. Post-Injection Endophthalmitis (PIE) Study Team Outcomes and risk factors associated with endophthalmitis after intravitreal injection of anti-vascular endothelial growth factor agents Ophthalmology 118 2011 2028 2034 10.1016/j.ophtha.2011.02.034 21705087 · DOI
- [29]Penn J.S. Madan A. Caldwell R.B. Bartoli M. Caldwell R.W. Hartnett M.E. Vascular endothelial growth factor in eye disease Prog. Retin. Eye Res. 27 2008 331 371 10.1016/j.preteyeres.2008.05.001 18653375 PMC3682685 · DOI
- [30]Marneros A.G. Fan J. Yokoyama Y. Gerber H.P. Ferrara N. Crouch R.K. Olsen B.R. Vascular endothelial growth factor expression in the retinal pigment epithelium is essential for choriocapillaris development and visual function Am. J. Pathol. 167 2005 1451 1459 10.1016/s0002-9440(10)61231-x 16251428 PMC1603772 · DOI
- [31]Nishida Y. Yamada Y. Kanemaru H. Ohazama A. Maeda T. Seo K. Vascularization via activation of VEGF-VEGFR signaling is essential for peripheral nerve regeneration Biomed. Res. 39 2018 287 294 10.2220/biomedres.39.287 30531158 · DOI
- [32]Wang H. Smith G.W. Yang Z. Jiang Y. McCloskey M. Greenberg K. Geisen P. Culp W.D. Flannery J. Kafri T. Short hairpin RNA-mediated knockdown of VEGFA in Muller cells reduces intravitreal neovascularization in a rat model of retinopathy of prematurity Am. J. Pathol. 183 2013 964 974 10.1016/j.ajpath.2013.05.011 23972394 PMC3763762 · DOI
- [33]Kurihara T. Westenskow P.D. Bravo S. Aguilar E. Friedlander M. Targeted deletion of Vegfa in adult mice induces vision loss J. Clin. Invest. 122 2012 4213 4217 10.1172/jci65157 23093773 PMC3484459 · DOI
- [34]Grunwald J.E. Pistilli M. Ying G.S. Maguire M.G. Daniel E. Martin D.F. Comparison of Age-related Macular Degeneration Treatments Trials Research Group Growth of geographic atrophy in the comparison of age-related macular degeneration treatments trials Ophthalmology 122 2015 809 816 10.1016/j.ophtha.2014.11.007 25542520 PMC4372487 · DOI
- [36]Jo D.H. Koo T. Cho C.S. Kim J.H. Kim J.S. Kim J.H. Long-term effects of in vivo genome editing in the mouse retina using Campylobacter jejuni Cas9 expressed via adeno-associated virus Mol. Ther. 27 2019 130 136 10.1016/j.ymthe.2018.10.009 30470629 PMC6318782 · DOI · Paper page
- [38]Hu J. Meyers R.M. Dong J. Panchakshari R.A. Alt F.W. Frock R.L. Detecting DNA double-stranded breaks in mammalian genomes by linear amplification-mediated high-throughput genome-wide translocation sequencing Nat. Protoc. 11 2016 853 871 10.1038/nprot.2016.043 27031497 PMC4895203 · DOI
- [39]Giannoukos G. Ciulla D.M. Marco E. Abdulkerim H.S. Barrera L.A. Bothmer A. Dhanapal V. Gloskowski S.W. Jayaram H. Maeder M.L. UDiTaS, a genome editing detection method for indels and genome rearrangements BMC Genomics 19 2018 212 10.1186/s12864-018-4561-9 29562890 PMC5861650 · DOI
- [41]Nelson C.E. Wu Y. Gemberling M.P. Oliver M.L. Waller M.A. Bohning J.D. Robinson-Hamm J.N. Bulaklak K. Castellanos Rivera R.M. Collier J.H. Long-term evaluation of AAV-CRISPR genome editing for Duchenne muscular dystrophy Nat. Med. 25 2019 427 432 10.1038/s41591-019-0344-3 30778238 PMC6455975 · DOI
- [42]Li Y. Bolinger J. Yu Y. Glass Z. Shi N. Yang L. Wang M. Xu Q. Intracellular delivery and biodistribution study of CRISPR/Cas9 ribonucleoprotein loaded bioreducible lipidoid nanoparticles Biomater. Sci. 7 2019 596 606 10.1039/c8bm00637g 30062347 · DOI
- [43]Chen G. Abdeen A.A. Wang Y. Shahi P.K. Robertson S. Xie R. Suzuki M. Pattnaik B.R. Saha K. Gong S. A biodegradable nanocapsule delivers a Cas9 ribonucleoprotein complex for in vivo genome editing Nat. Nanotechnol. 14 2019 974 980 10.1038/s41565-019-0539-2 31501532 PMC6778035 · DOI
- [44]Lyu P. Javidi-Parsijani P. Atala A. Lu B. Delivering Cas9/sgRNA ribonucleoprotein (RNP) by lentiviral capsid-based bionanoparticles for efficient ‘hit-and-run’ genome editing Nucleic Acids Res. 47 2019 e99 10.1093/nar/gkz605 31299082 PMC6753487 · DOI
- [45]Nihongaki Y. Kawano F. Nakajima T. Sato M. Photoactivatable CRISPR-Cas9 for optogenetic genome editing Nat. Biotechnol. 33 2015 755 760 10.1038/nbt.3245 26076431 · DOI
- [46]Chen X. Chen Y. Xin H. Wan T. Ping Y. Near-infrared optogenetic engineering of photothermal nanoCRISPR for programmable genome editing Proc. Natl. Acad. Sci. U S A 117 2020 2395 2405 10.1073/pnas.1912220117 31941712 PMC7007568 · DOI
- [47]Li F. Hung S.S.C. Mohd Khalid M.K.N. Wang J.H. Chrysostomou V. Wong V.H.Y. Singh V. Wing K. Tu L. Bender J.A. Utility of self-destructing CRISPR/Cas constructs for targeted gene editing in the retina Hum. Gene Ther. 30 2019 1349 1360 10.1089/hum.2019.021 31373227 · DOI
- [48]Chung S.H. Mollhoff I.N. Mishra A. Sin T.N. Ngo T. Ciulla T. Sieving P. Thomasy S.M. Yiu G. Host immune responses after suprachoroidal delivery of AAV8 in nonhuman primate eyes Hum. Gene Ther. 32 2021 682 693 10.1089/hum.2020.281 33446041 PMC8312020 · DOI · Paper page
- [49]Fernandez-Godino R. Garland D.L. Pierce E.A. Isolation, culture and characterization of primary mouse RPE cells Nat. Protoc. 11 2016 1206 1218 10.1038/nprot.2016.065 27281648 PMC6432639 · DOI
- [50]Zhang P. Zam A. Jian Y. Wang X. Li Y. Lam K.S. Burns M.E. Sarunic M.V. Pugh E.N. Jr. Zawadzki R.J. In vivo wide-field multispectral scanning laser ophthalmoscopy-optical coherence tomography mouse retinal imager: longitudinal imaging of ganglion cells, microglia, and Muller glia, and mapping of the mouse retinal and choroidal vasculature J. Biomed. Opt. 20 2015 126005 10.1117/1.jbo.20.12.126005 26677070 PMC4681314 · DOI
- [51]Tsai S.Q. Topkar V.V. Joung J.K. Aryee M.J. Open-source guideseq software for analysis of GUIDE-seq data Nat. Biotechnol. 34 2016 483 10.1038/nbt.3534 27153277 · DOI
- [52]Li H. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM Preprint at arXiv 2013 10.48550/arXiv.1303.3997 · DOI
- [53]Quinlan A.R. Hall I.M. BEDTools: a flexible suite of utilities for comparing genomic features Bioinformatics 26 2010 841 842 10.1093/bioinformatics/btq033 20110278 PMC2832824 · DOI · Paper page
- [54]Hsu P.D. Scott D.A. Weinstein J.A. Ran F.A. Konermann S. Agarwala V. Li Y. Fine E.J. Wu X. Shalem O. DNA targeting specificity of RNA-guided Cas9 nucleases Nat. Biotechnol. 31 2013 827 832 10.1038/nbt.2647 23873081 PMC3969858 · DOI · Paper page
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Characterization of RNA editing and gene therapy with a compact CRISPR-Cas13 in the retina
Kumar, S., Hsiao, Y.-W., Wong, V. H. Y., Aubin, D., Wang, J.-H., Lisowski, L., Rakoczy, E. P., Li, F., Alarcon-Martinez, L., Gonzalez-Cordero, A., et al. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2408345121 · Cited by 19 · see citing works
- Authors
- Chung, S. H., Sin, T.-N., Dang, B., Ngo, T., Lo, T., Lent-Schochet, D., Meleppat, R. K., Zawadzki, R. J., & Yiu, G.
- Affiliations
- UC Davis Health (US)
- Corresponding author
- Yiu, Glenn
- ORCID
- Venue
- Molecular Therapy - Nucleic Acids
- Publisher
- Elsevier BV
- Published
- 2022-06
- Volume
- 28
- Pages
- 613-622
- ISSN
- 2162-2531 (ISSN-L)
- PMC
- PMC9114159
- OpenAlex
- W4224952669
- Cited by
- 37
- References
- 10
- Citations by year
- 2026: 9 · 2025: 7 · 2024: 12 · 2023: 8 · 2022: 1
- FWCI
- 2.29
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Molecular Therapy — Nucleic Acids (publishedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- eScholarship (California Digital Library) (submittedVersion, cc-by-nc-nd)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- Funders
- National Cancer Institute (P30CA093373)
- National Eye Institute (R21 EY031108, R01 EY032238)
- BrightFocus Foundation
- Genentech
- Macula Society
- National Institutes of Health
- University of California, Davis
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › CRISPR and Genetic Engineering
- Health Sciences › Medicine › Ophthalmology › Retinal Diseases and Treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Retinal Development and Disorders
- Keywords
- CRISPR/Cas9, choroidal neovascularization, neovascular age-related macular degeneration, anti-angiogenic therapy, off-target effects, GUIDE-seq, indel mutations, rhesus monkeys, mouse eye
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