The Veterans Affairs Precision Oncology Data Repository, a Clinical, Genomic, and Imaging Research Database
Open accessAbstract
The Veterans Affairs Precision Oncology Data Repository (VA-PODR) is a large, nationwide repository of de-identified data on patients diagnosed with cancer at the Department of Veterans Affairs (VA). Data include longitudinal clinical data from the VA's nationwide electronic health record system and the VA Central Cancer Registry, targeted tumor sequencing data, and medical imaging data including computed tomography (CT) scans and pathology slides. A subset of the repository is available at the Genomic Data Commons (GDC) and The Cancer Imaging Archive (TCIA), and the full repository is available through the Veterans Precision Oncology Data Commons (VPODC). By releasing this de-identified dataset, we aim to advance Veterans' health care through enabling translational research on the Veteran population by a wide variety of researchers.
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VA-PODR data consists of long-term clinical data from the nationwide Veterans Affairs eHealth record, medical photography data, tumor sequencing targets, pathology slides, the Veterans Affairs central cancer registry, and CT scans.
“This data consists of long-term clinical data from the nationwide Veterans Affairs eHealth record, medical photography data, tumor sequencing targets, pathology slides, and the Veterans Affairs central cancer registry as well as CT (computer tomography) scans.”
From Influential Usage of Big Data and Artificial Intelligence in Healthcare (2021) · cites this paper as [67]
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Cites
The FAIR Guiding Principles for scientific data management and stewardship
Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.-W., da Silva Santos, L. B., Bourne, P. E., et al. (2016) · Scientific Data · doi:10.1038/sdata.2016.18 · Cited by 18,423 · see citing works
The cancer genome atlas pan-cancer analysis project
The Cancer Genome Atlas Research Network, Weinstein, J. N., Collisson, E. A., Mills, G. B., Shaw, K. R. M., Ozenberger, B. A., Ellrott, K., Shmulevich, I., Sander, C., & Stuart, J. M. (2013) · Nature Genetics · doi:10.1038/ng.2764 · Cited by 9,092 · see citing works
MIMIC-III, a freely accessible critical care database
Johnson, A. E. W., Pollard, T. J., Shen, L., Lehman, L.-W. H., Feng, M., Ghassemi, M., Moody, B., Szolovits, P., Anthony Celi, L., & Mark, R. G. (2016) · Scientific Data · doi:10.1038/sdata.2016.35 · Cited by 8,141 · see citing works
The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository
Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., et al. (2013) · Journal of Digital Imaging · doi:10.1007/s10278-013-9622-7 · Cited by 4,599 · see citing works
Toward a Shared Vision for Cancer Genomic Data
Grossman, R. L., Heath, A. P., Ferretti, V., Varmus, H. E., Lowy, D. R., Kibbe, W. A., & Staudt, L. M. (2016) · New England Journal of Medicine · doi:10.1056/nejmp1607591 · Cited by 1,680 · see citing works
Self-citationVistA—U.S. Department of Veterans Affairs national-scale HIS
Brown, S. (2002) · International Journal of Medical Informatics · doi:10.1016/s1386-5056(02)00131-4 · Cited by 238 · see citing works
Cancer Incidence Among Patients of the U.S. Veterans Affairs Health Care System
Zullig, L. L., Jackson, G. L., Dorn, R. A., Provenzale, D., McNeil, R. B., Thomas, C. M., & Kelley, M. J. (2012) · Military Medicine · doi:10.7205/milmed-d-11-00434 · Cited by 183 · see citing works
The Orthanc Ecosystem for Medical Imaging
Jodogne, S. (2018) · Journal of Digital Imaging · doi:10.1007/s10278-018-0082-y · Cited by 93 · see citing works
A U.S. “Cancer Moonshot” to accelerate cancer research
Singer, D. S., Jacks, T., & Jaffee, E. M. (2016) · Science · doi:10.1126/science.aai7862 · Cited by 55 · see citing works
Dankar, F. K., Ptitsyn, A. A., & Dankar, S. K. (2018) · Human Genomics · doi:10.1186/s40246-018-0147-5 · Cited by 43 · see citing works
Fiore, L. D., Brophy, M. T., Turek, S., Kudesia, V., Ramnath, N., Shannon, C., Ferguson, R. E., Pyarajan, S., Fiore, M., Hornberger, J. C., et al. (2016) · Biomarkers in Cancer · doi:10.4137/bic.s37548 · Cited by 25 · see citing works
Self-citationDo, N., Grossman, R. L., Feldman, T. C., Fillmore, N. R., Elbers, D. C., Tuck, D. P., Dhond, R. P., Selva, L. E., Meng, F., Fitzsimons, M., et al. (2019) · Seminars in Oncology · doi:10.1053/j.seminoncol.2019.09.002 · Cited by 16 · see citing works
Self-citationMultisite Image Data Collection and Management Using the RSNA Image Sharing Network
Erickson, B. J., Fajnwaks, P., Langer, S. G., & Perry, J. H. (2014) · Translational Oncology · doi:10.1593/tlo.13799 · Cited by 15 · see citing works
Fiore, L. D., Ferguson, R. E., Brophy, M. T., Kudesia, V., Shannon, C., Zimolzak, A., Pierce-Murray, K. E., Turek, S., & Lavori, P. W. (2016) · Europe PMC (PubMed Central) · Cited by 6 · see citing works
Self-citationCheng, D. T.-Y., Ramos‐Cejudo, J., Tuck, D. P., Elbers, D. C., Brophy, M. T., Do, N., & Fillmore, N. R. (2019) · Seminars in Oncology · doi:10.1053/j.seminoncol.2019.09.006 · Cited by 4 · see citing works
Self-citationImplementation of precision oncology in the Veterans Health Administration (VHA).
Kelley, M. J., Duffy, J. E., Hintze, B. J., Williams, C. D., & Spector, N. L. (2017) · Journal of Clinical Oncology · doi:10.1200/jco.2017.35.15_suppl.6507 · Cited by 3 · see citing works
Fillmore, N. R., Ramos-Cejudo, J., Cheng, D. T.-Y., Tuck, D. P., Sheikh, A. R., Chen, D. C. R., Elbers, D. C., Sung, F.-C., Johnson, B., Shannon, C., et al. (2019) · Journal of Clinical Oncology · doi:10.1200/jco.2019.37.15_suppl.109 · Cited by 1 · see citing works
Self-citation
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1 of the 18 references couldn’t be matched to a known paper.
Research works printed but not linked: 1
- [19]Jodogne S. The Orthanc ecosystem for medical imaging J. Digit. Imaging 31 2018 341 352 29725964 PMC5959835
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Placido, D., Yuan, B., Hjaltelin, J. X., Zheng, C., Haue, A. D., Chmura, P. J., Yuan, C., Kim, J., Umeton, R., Antell, G., et al. (2023) · Nature Medicine · doi:10.1038/s41591-023-02332-5 · Cited by 349 · see citing works
Self-citationInfluential Usage of Big Data and Artificial Intelligence in Healthcare
Yang, Y. C., Islam, S. U., Noor, A., Khan, S., Afsar, W., & Nazir, S. (2021) · Computational and Mathematical Methods in Medicine · doi:10.1155/2021/5812499 · Cited by 68 · see citing works
“A subset of this data storage is available in GDC (genomic data commune) and the TCIA (The Cancer Imaging Archive) [67].”
MethodRetractedBridging gaps between images and data: a systematic update on imaging biobanks
Gabelloni, M., Faggioni, L., Borgheresi, R., Restante, G., Shortrede, J. E., Tumminello, L., Scapicchio, C., Coppola, F., Cioni, D., Junquero, I. G.-R., et al. (2022) · European Radiology · doi:10.1007/s00330-021-08431-6 · Cited by 42 · see citing works
Pancreatic cancer risk predicted from disease trajectories using deep learningPreprint
Placido, D., Yuan, B., Hjaltelin, J. X., Zheng, C., Haue, A. D., Chmura, P. J., Yuan, C., Kim, J., Umeton, R., Antell, G. C., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.06.27.449937 · Cited by 16 · see citing works
Self-citationMartsenyuk, V., Kłos-Witkowska, A., Сверстюк, А. С., Багрій-Заяць, О. А., Bernaś, M., & Witos, K. (2021) · doi:10.32782/cmis/2864-4 · Cited by 10 · see citing works
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Dhond, R. P., Elbers, D. C., Majahalme, N., Dipietro, S., Goryachev, S. D., Acher, R., Leatherman, S. M., Anglin-Foote, T. R., Liu, Q., Su, S., et al. (2021) · JAMIA Open · doi:10.1093/jamiaopen/ooab074 · Cited by 8 · see citing works
Self-citationClark, M. M., Meyer, C., Ramos‐Cejudo, J., Elbers, D. C., Pierce-Murray, K. E., Fricks, R., Alterovitz, G., Rao, L. K. F., Brophy, M. T., Do, N., et al. (2024) · Studies in health technology and informatics · doi:10.3233/shti231062 · Cited by 5 · see citing works
Self-citationHernandez, K. M., Venkat, A., Elbers, D. C., Bihn, J. R., Brophy, M. T., Do, N., La, J., Liu, Q., Prokhorenkov, A., Metoki-Shlubsky, N., et al. (2023) · Molecular Case Studies · doi:10.1101/mcs.a006298 · Cited by 3 · see citing works
Self-citationTrunnell, M., Frankenberger, C. A., Hota, B. N., Hughes, T., Martinov, P., Ravichandran, U., Shah, N. S., Grossman, R. L., Frankenberger, C. A., Grossman, R. L., et al. (2024) · JAMIA Open · doi:10.1093/jamiaopen/ooae025 · Cited by 1 · see citing works
Self-citationTowards self-describing and FAIR bulk formats for biomedical data
Lukowski, M., Prokhorenkov, A., & Grossman, R. L. (2023) · PLoS Computational Biology · doi:10.1101/2022.07.19.500678
Self-citationInformation Sharing through Digital Service Agreement (Preprint)Preprint
Elvas, L. B., Helgheim, B. I., Martins, A., & Ferreira, J. C. (2022) · doi:10.2196/preprints.40663
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Hartman, D. J., Chandran, U. R., Davis, M., Dhir, R., Shirey, W. E., Silverstein, J. C., & Becich, M. J. (2022) · Holland‐Frei Cancer Medicine · doi:10.1002/9781119000822.hfcm022.pub2
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Elvas, L. B., Helgheim, B. I., & Ferreira, J. C. (2023) · medRxiv · doi:10.1101/2023.01.18.23284718
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Elbers, D. C., Fillmore, N. R., La, J., Tosi, H. M., Ajjarapu, S., Dhond, R. P., Murray, K., Valley, D., Shannon, C., Brophy, M. T., et al. (2024) · Studies in health technology and informatics · doi:10.3233/shti231141
Self-citationSinghera, F. U., Overhulse, J. M., Lee, T. M., Katz, J. G., Lee, J. S. H., & McKenna, C. E. (2026) · Cancers · doi:10.3390/cancers18182939
- Authors
- Elbers, D. C., Fillmore, N. R., Sung, F.-C., Ganas, S. S., Prokhorenkov, A., Meyer, C., Hall, R. B., Ajjarapu, S. J., Chen, D. C., Meng, F., Grossman, R. L., Brophy, M. T., & Do, N. V.
- Affiliations
- University of Vermont (US)
- Harvard University (US)
- VA Boston Healthcare System (US)
- University of Chicago (US)
- Boston University (US)
- Corresponding author
- Elbers, Danne C.
- ORCID
- Venue
- Patterns
- Publisher
- Elsevier BV
- Published
- 2020-09
- Volume
- 1
- Issue
- 6
- Pages
- 100083
- ISSN
- 2666-3899 (ISSN-L)
- PMC
- PMC7660389
- OpenAlex
- W3077852914
- Cited by
- 15
- References
- 18
- Citations by year
- 2026: 1 · 2024: 3 · 2023: 4 · 2022: 3 · 2021: 4
- FWCI
- 0.94
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Patterns (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- VA Office of Research and Development
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer Genomics and Diagnostics
- Health Sciences › Medicine › Health Informatics › Artificial Intelligence in Healthcare and Education
- Health Sciences › Health Professions › Health Information Management › Electronic Health Records Systems
- Keywords
- precision oncology, veterans, cancer, electronic health records, tumor sequencing, diagnostic imaging, computed tomography, pathology slides, Genomic Data Commons, The Cancer Imaging Archive, translational research
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