The DOI matches its Crossref record; 47 of the 47 references it cites were found in a registry or an index.
Gene body DNA methylation in plants
Open accessAbstract
The type, amount, and location of DNA methylation within a gene provides pivotal information on the enzymatic pathway by which it was achieved and its functional consequences. In plants (angiosperms specifically), gene body methylation (gbM) refers to genes with an enrichment of CG DNA methylation within the transcribed regions and depletion at the transcriptional start and termination sites. GbM genes often compose the bulk of methylated genes within angiosperm genomes and are enriched for housekeeping functions. Contrary to the transcriptionally repressive effects of other chromatin modifications within gene bodies, gbM genes are constitutively expressed. GbM has intrigued researchers since its discovery, and much effort has been placed on identifying its functional role. Here, we highlight the recent findings on the evolutionary origin and molecular mechanism of gbM and synthesize studies describing the possible roles for this enigmatic epigenetic phenotype.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Law, J. A., & Jacobsen, S. E. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2719 · Cited by 3,850
Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
Zemach, A., McDaniel, I. E., Silva, P., & Zilberman, D. (2010) · Science · doi:10.1126/science.1186366 · Cited by 1,793
Conserved role of intragenic DNA methylation in regulating alternative promoters
Maunakea, A. K., Nagarajan, R. P., Bilenky, M., Ballinger, T. J., D’Souza, C., Fouse, S. D., Johnson, B. E., Hong, C., Nielsen, C., Zhao, Y., et al. (2010) · Nature · doi:10.1038/nature09165 · Cited by 1,743
RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
Matzke, M. A., & Mosher, R. A. (2014) · Nature Reviews Genetics · doi:10.1038/nrg3683 · Cited by 1,655
Zilberman, D., Gehring, M., Tran, R. K., Ballinger, T., & Henikoff, S. (2007) · Nature Genetics · doi:10.1038/ng1929 · Cited by 1,367
Conservation and divergence of methylation patterning in plants and animals
Feng, S., Cokus, S. J., Zhang, X., Chen, P.-Y., Bostick, M., Goll, M. G., Hetzel, J., Jain, J., Strauss, S. H., Halpern, M. E., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002720107 · Cited by 1,285
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
Jackson, J. P., Lindroth, A. M., Cao, X., & Jacobsen, S. E. (2002) · Nature · doi:10.1038/nature731 · Cited by 1,251
Zemach, A., Kim, M. Y., Hsieh, P.-H., Coleman-Derr, D., Eshed-Williams, L., Thao, K., Harmer, S. L., & Zilberman, D. (2013) · Cell · doi:10.1016/j.cell.2013.02.033 · Cited by 1,180
Regulation of Alternative Splicing by Histone Modifications
Luco, R. F., Pan, Q., Tominaga, K., Blencowe, B. J., Pereira-Smith, O. M., & Misteli, T. (2010) · Science · doi:10.1126/science.1184208 · Cited by 1,109
DNA methylation pathways and their crosstalk with histone methylation
Du, J., Johnson, L. M., Jacobsen, S. E., & Patel, D. J. (2015) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm4043 · Cited by 1,000
Cited by
The transcriptional landscape of polyploid wheat
Ramírez-González, R. H., Borrill, P., Lang, D., Harrington, S. A., Brinton, J., Venturini, L., Davey, M., Jacobs, J., van Ex, F., Pasha, A., et al. (2018) · Science · doi:10.1126/science.aar6089 · Cited by 1,018
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
Hufford, M. B., Seetharam, A. S., Woodhouse, M. R., Chougule, K. M., Ou, S., Liu, J., Ricci, W. A., Guo, T., Olson, A., Qiu, Y., et al. (2021) · Science · doi:10.1126/science.abg5289 · Cited by 747
Self-citationDynamics of dna methylation and its functions in plant growth and development
Kumar, S., & Mohapatra, T. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.596236 · Cited by 227
Heritable Epigenomic Changes to the Maize Methylome Resulting from Tissue Culture
Han, Z., Crisp, P. A., Stelpflug, S., Kaeppler, S. M., Li, Q., & Springer, N. M. (2018) · Genetics · doi:10.1534/genetics.118.300987 · Cited by 78
How Stress Facilitates Phenotypic Innovation Through Epigenetic Diversity
Srikant, T., & Drost, H.-G. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2020.606800 · Cited by 67
Metadata
- Authors
- Bewick, A. J., & Schmitz, R. J.
- Venue
- Current Opinion in Plant Biology
- Publisher
- Elsevier BV
- Published
- 2017-04
- Volume
- 36
- Pages
- 103-110
- ISSN
- 1369-5266 (ISSN-L)
- OpenAlex
- W2592817720
- Cited by
- 409
- References
- 47
- FWCI
- 2.85
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Gene body DNA methylation in plants. https://app.cochat.ai/papers/10.1016/j.pbi.2016.12.007
- The paper
- Bewick, A. J., & Schmitz, R. J. (2017). Gene body DNA methylation in plants. Current Opinion in Plant Biology. https://doi.org/10.1016/j.pbi.2016.12.007
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.