DNA methylation pathways and their crosstalk with histone methylation

Functions of DNA methylation: islands, start sites, gene bodies and beyond

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Human DNA methylomes at base resolution show widespread epigenomic differences

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

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Establishing, maintaining and modifying DNA methylation patterns in plants and animals

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DNA methylation: roles in mammalian development

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Regulation of chromatin structure by site-specific histone H3 methyltransferases

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Genome-scale DNA methylation maps of pluripotent and differentiated cells

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Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

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Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

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The diverse functions of histone lysine methylation

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Global epigenomic reconfiguration during mammalian brain development

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Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis

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RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

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DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA

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UHRF1 Plays a Role in Maintaining DNA Methylation in Mammalian Cells

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DNA-binding factors shape the mouse methylome at distal regulatory regions

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SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins

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The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA

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Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase

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Heterochromatin revisited

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Suv39h-Mediated Histone H3 Lysine 9 Methylation Directs DNA Methylation to Major Satellite Repeats at Pericentric Heterochromatin

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The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

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Partitioning and Plasticity of Repressive Histone Methylation States in Mammalian Chromatin

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DNA methylation in health and disease

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A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei

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A histone H3 methyltransferase controls DNA methylation in Neurospora crassa

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Requirement of CHROMOMETHYLASE3 for Maintenance of CpXpG Methylation

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KAP1 controls endogenous retroviruses in embryonic stem cells

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Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation

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Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

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Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET

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Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing.

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SET Domain-containing Protein, G9a, Is a Novel Lysine-preferring Mammalian Histone Methyltransferase with Hyperactivity and Specific Selectivity to Lysines 9 and 27 of Histone H3

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The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase

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Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development.

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Dynamic DNA methylation across diverse human cell lines and tissuesPreprint

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PREMEIOTIC INSTABILITY OF REPEATED SEQUENCES IN NEUROSPORA CRASSA

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Arabidopsis MET1 Cytosine Methyltransferase Mutants

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Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

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H3K9 methyltransferase G9a and the related molecule GLPPreprint

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The Dnmt3a PWWP Domain Reads Histone 3 Lysine 36 Trimethylation and Guides DNA Methylation

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Maintenance of self‐renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b

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Direct interaction between DNMT1 and G9a coordinates DNA and histone methylation during replicationPreprint

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DNA Methylation and SETDB1/H3K9me3 Regulate Predominantly Distinct Sets of Genes, Retroelements, and Chimeric Transcripts in mESCs

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Understanding the relationship between DNA methylation and histone lysine methylation

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Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism

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KDM1B is a histone H3K4 demethylase required to establish maternal genomic imprints

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An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons

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DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis

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Mouse centric and pericentric satellite repeats form distinct functional heterochromatin

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Dual Binding of Chromomethylase Domains to H3K9me2-containing Nucleosomes Directs DNA Methylation in Plants

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Structural basis for recognition of hemi-methylated DNA by the SRA domain of human UHRF1

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Structure of DNMT1-DNA Complex Reveals a Role for Autoinhibition in Maintenance DNA Methylation

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De novo DNA methylation promoted by G9a prevents reprogramming of embryonically silenced genes

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RNA polymerase V transcription guides ARGONAUTE4 to chromatin

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The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix

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Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene.Preprint

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Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.Preprint

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Histone modifications and silencing prior to DNA methylation of a tumor suppressor gene

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The SRA Methyl-Cytosine-Binding Domain Links DNA and Histone Methylation

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Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX–DNMT3–DNMT3L domain

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Uhrf1-dependent H3K23 ubiquitylation couples maintenance DNA methylation and replication

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Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail

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Embryonic stem cells use ZFP809 to silence retroviral DNAs

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Trimethylated lysine 9 of histone H3 is a mark for DNA methylation in Neurospora crassa

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Histone H3-lysine 9 methylation is associated with aberrant gene silencing in cancer cells and is rapidly reversed by 5-aza-2'-deoxycytidine.

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In Vivo Control of CpG and Non-CpG DNA Methylation by DNA Methyltransferases

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Polymerase-IV occupancy at RNA-directed DNA methylation sites requires SHH1

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Rearrangement of duplicated DNA in specialized cells of Neurospora

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Structural insight into autoinhibition and histone H3-induced activation of DNMT3A

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Repeat-induced G-C to A-T Mutations in Neurospora

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The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier–Gorlin syndrome

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Plant DNA methyltransferases

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Structure-Based Mechanistic Insights into DNMT1-Mediated Maintenance DNA Methylation

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Functional cooperation between HP1 and DNMT1 mediates gene silencingPreprint

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Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana

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SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation

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HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double‐stranded RNA

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Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases

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A Subset of the Histone H3 Lysine 9 Methyltransferases Suv39h1, G9a, GLP, and SETDB1 Participate in a Multimeric Complex

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Readout of Epigenetic Modifications

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An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation

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Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin

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Locus-Specific Control of DNA Methylation by theArabidopsisSUVH5 Histone Methyltransferase

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The ankyrin repeats of G9a and GLP histone methyltransferases are mono- and dimethyllysine binding modules

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ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome

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Arabidopsis Histone Deacetylase HDA6 Is Required for Maintenance of Transcriptional Gene Silencing and Determines Nuclear Organization of rDNA Repeats

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