Web-based resources for mass-spectrometry-based metabolomics: a user’s guide

KEGG: Kyoto Encyclopedia of Genes and Genomes

Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H., & Kanehisa, M. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.29 · Cited by 31,232 · see citing works

XCMS: Processing Mass Spectrometry Data for Metabolite Profiling Using Nonlinear Peak Alignment, Matching, and Identification

Smith, C. A., Want, E. J., O’Maille, G., Abagyan, R. A., & Siuzdak, G. E. (2006) · Analytical Chemistry · doi:10.1021/ac051437y · Cited by 5,296 · see citing works

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

Caspi, R., Billington, R., Ferrer, L., Foerster, H., Fulcher, C. A., Keseler, I. M., Kothari, A., Krummenacker, M., Latendresse, M., Mueller, L. A., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1164 · Cited by 3,395 · see citing works

mapman : a user‐driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

Thimm, O., Bläsing, O. E., Gibon, Y., Nagel, A., Meyer, S., Krüger, P., Selbig, J., Müller, L. A., Rhee, S. Y., & Stitt, M. (2004) · The Plant Journal · doi:10.1111/j.1365-313x.2004.02016.x · Cited by 3,356 · see citing works

HMDB: the Human Metabolome Database

Wishart, D. S., Tzur, D., Knox, C., Eisner, R., Guo, A. C., Young, N., Cheng, D., Jewell, K., Arndt, D., Sawhney, S., et al. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkl923 · Cited by 3,219 · see citing works

Metabolomics — the link between genotypes and phenotypes

Fiehn, O. (2002) · Springer eBooks · doi:10.1007/978-94-010-0448-0_11 · Cited by 3,168 · see citing works

From genomics to chemical genomics: new developments in KEGG

Kanehisa, M. I. (2005) · Nucleic Acids Research · doi:10.1093/nar/gkj102 · Cited by 3,126 · see citing works

METLIN—a metabolite mass spectral database

Smith, C. A., Maille, G. O., Want, E. J., Qin, C., Trauger, S. A., Brandon, T. R., Custodio, D. E., Abagyan, R., & Siuzdak, G. (2005) · Therapeutic Drug Monitoring · doi:10.1097/01.ftd.0000179845.53213.39 · Cited by 2,226 · see citing works

Gas chromatography mass spectrometry–based metabolite profiling in plants

Lisec, J., Schauer, N., Kopka, J., Willmitzer, L., & Fernie, A. R. (2006) · Nature Protocols · doi:10.1038/nprot.2006.59 · Cited by 2,176 · see citing works

Metabolite profiling for plant functional genomics

Fiehn, O., Kopka, J., Dörmann, P., Altmann, T., Trethewey, R. N., & Willmitzer, L. (2000) · Nature Biotechnology · doi:10.1038/81137 · Cited by 2,129 · see citing works

A comprehensive classification system for lipids

Fahy, E., Subramaniam, S., Brown, H. A., Glass, C. K., Merrill, A. H., Murphy, R. C., Raetz, C. R. H., Russell, D. W., Seyama, Y., Shaw, W., et al. (2005) · Journal of Lipid Research · doi:10.1194/jlr.e400004-jlr200 · Cited by 1,899 · see citing works

GMD@CSB.DB: the Golm Metabolome Database

Kopka, J., Schauer, N., Krueger, S., Birkemeyer, C., Usadel, B., Bergmuller, E., Dörmann, P., Weckwerth, W., Gibon, Y., Stitt, M., et al. (2004) · Computer applications in the biosciences · doi:10.1093/bioinformatics/bti236 · Cited by 1,374 · see citing works

Visualization of GC/TOF-MS-Based Metabolomics Data for Identification of Biochemically Interesting Compounds Using OPLS Class Models

Wiklund, S., Johansson, E., Sjöström, L., Mellerowicz, E. J., Edlund, U. G., Shockcor, J. P., Gottfries, J., Möritz, T., & Trygg, J. (2007) · Analytical Chemistry · doi:10.1021/ac0713510 · Cited by 1,234 · see citing works

Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry

Kind, T., & Fiehn, O. (2007) · BMC Bioinformatics · doi:10.1186/1471-2105-8-105 · Cited by 1,201 · see citing works

The NIST Chemistry WebBook: A Chemical Data Resource on the Internet

Linstrom, P. J., & Mallard, W. G. (2001) · Journal of Chemical & Engineering Data · doi:10.1021/je000236i · Cited by 1,145 · see citing works

ChEBI: a database and ontology for chemical entities of biological interest

Degtyarenko, K. N., de Matos, P., Ennis, M., Hastings, J., Zbinden, M., McNaught, A., Alcántara, R., Darsow, M., Guedj, M., & Ashburner, M. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm791 · Cited by 1,130 · see citing works

Plant metabolomics: large-scale phytochemistry in the functional genomics era

Sumner, L. W., Mendes, P., & Dixon, R. A. (2003) · Phytochemistry · doi:10.1016/s0031-9422(02)00708-2 · Cited by 1,096 · see citing works

Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry

de Vos, R. C. H., Moco, S., Lommen, A., Keurentjes, J. J. B., Bino, R. J., & Hall, R. D. (2007) · Nature Protocols · doi:10.1038/nprot.2007.95 · Cited by 1,033 · see citing works

Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over‐expressing an MYB transcription factor

Tohge, T., Nishiyama, Y., Hirai, M. Y., Yano, M., Nakajima, J., Awazuhara, M., Inoue, E., Takahashi, H., Goodenowe, D. B., Kitayama, M., et al. (2005) · The Plant Journal · doi:10.1111/j.1365-313x.2005.02371.x · Cited by 987 · see citing works

Optimization and testing of mass spectral library search algorithms for compound identification

Stein, S. E., & Scott, D. R. (1994) · Journal of the American Society for Mass Spectrometry · doi:10.1016/1044-0305(94)87009-8 · Cited by 882 · see citing works

Metabolite profiling: from diagnostics to systems biology

Fernie, A. R., Trethewey, R. N., Krotzky, A. J., & Willmitzer, L. (2004) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1451 · Cited by 847 · see citing works

An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data

Stein, S. E. (1999) · Journal of the American Society for Mass Spectrometry · doi:10.1016/s1044-0305(99)00047-1 · Cited by 826 · see citing works

Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana

Hirai, M. Y., Yano, M., Goodenowe, D. B., Kanaya, S., Kimura, T., Awazuhara, M., Arita, M., Fujiwara, T., & Saito, K. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0403218101 · Cited by 754 · see citing works

GC–MS libraries for the rapid identification of metabolites in complex biological samples

Schauer, N., Steinhauser, D., Strelkov, S., Schomburg, D., Allison, G. G., Möritz, T., Lundgren, K., Roessner, U., Forbes, M. G., Willmitzer, L., et al. (2005) · FEBS Letters · doi:10.1016/j.febslet.2005.01.029 · Cited by 694 · see citing works

Quality control for plant metabolomics: reporting MSI‐compliant studies

Fiehn, O., Wohlgemuth, G., Scholz, M., Kind, T., Lee, D. Y., Lü, Y., Moon, S. M., & Nikolau, B. J. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2007.03387.x · Cited by 676 · see citing works

Chemical derivatization and mass spectral libraries in metabolic profiling by GC/MS and LC/MS/MS

Halket, J. M., Waterman, D., Przyborowska, A. M., Patel, R. K. P., Fraser, P. D., & Bramley, P. M. (2004) · Journal of Experimental Botany · doi:10.1093/jxb/eri069 · Cited by 664 · see citing works

Metabolomic database annotations via query of elemental compositions: Mass accuracy is insufficient even at less than 1 ppm

Kind, T., & Fiehn, O. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-234 · Cited by 639 · see citing works

Metabolite identification via the Madison Metabolomics Consortium Database

Cui, Q., Lewis, I. A., Hegeman, A. D., Anderson, M. E., Li, J., Schulte, C., Westler, W. M., Eghbalnia, H. R., Sussman, M. R., & Markley, J. L. (2008) · Nature Biotechnology · doi:10.1038/nbt0208-162 · Cited by 632 · see citing works

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

Karp, P. D. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki892 · Cited by 611 · see citing works

A Liquid Chromatography-Mass Spectrometry-Based Metabolome Database for Tomato

Moco, S., Bino, R. J., Vorst, O., Verhoeven, H. A., de Groot, J., van Beek, T. A., Vervoort, J. J. M., & Vos, C. H. R. D. (2006) · PLANT PHYSIOLOGY · doi:10.1104/pp.106.078428 · Cited by 578 · see citing works

Metabolomics-assisted breeding: a viable option for crop improvement?

Fernie, A. R., & Schauer, N. (2009) · Trends in Genetics · doi:10.1016/j.tig.2008.10.010 · Cited by 550 · see citing works

TagFinder for the quantitative analysis of gas chromatography—mass spectrometry (GC-MS)-based metabolite profiling experiments

Luedemann, A., Strassburg, K., Erban, A., & Kopka, J. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btn023 · Cited by 547 · see citing works

Plant metabolomics: towards biological function and mechanism

Schauer, N., & Fernie, A. R. (2006) · Trends in Plant Science · doi:10.1016/j.tplants.2006.08.007 · Cited by 436 · see citing works

AraCyc: A Biochemical Pathway Database for Arabidopsis

Mueller, L. A., Zhang, P., & Rhee, S. Y. (2003) · PLANT PHYSIOLOGY · doi:10.1104/pp.102.017236 · Cited by 434 · see citing works

Nontargeted Metabolome Analysis by Use of Fourier Transform Ion Cyclotron Mass Spectrometry

Aharoni, A., Vos, C. H. R. D., Verhoeven, H. A., Maliepaard, C. A., Kruppa, G. H., Bino, R. J., & Goodenowe, D. B. (2002) · OMICS A Journal of Integrative Biology · doi:10.1089/15362310260256882 · Cited by 428 · see citing works

Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene–Metabolite Correlations inArabidopsis

Yonekura‐Sakakibara, K., Tohge, T., Matsuda, F., Nakabayashi, R., Takayama, H., Niida, R., Watanabe‐Takahashi, A., Inoue, E., & Saito, K. (2008) · The Plant Cell · doi:10.1105/tpc.108.058040 · Cited by 399 · see citing works

The cell and developmental biology of alkaloid biosynthesis

Luca, V. D., & St‐Pierre, B. (2000) · Trends in Plant Science · doi:10.1016/s1360-1385(00)01575-2 · Cited by 365 · see citing works

Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex

Schauer, N. (2004) · Journal of Experimental Botany · doi:10.1093/jxb/eri057 · Cited by 313 · see citing works

Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles

Wagner, C., Sefkow, M., & Kopka, J. (2003) · Phytochemistry · doi:10.1016/s0031-9422(02)00703-3 · Cited by 291 · see citing works

A proposed framework for the description of plant metabolomics experiments and their results

JENKINS, H. A., Hardy, N. W., Beckmann, M., Draper, J., SMITH, A. R., Taylor, J., Fiehn, O., Goodacre, R., Bino, R. J., Hall, R. D., et al. (2004) · Nature Biotechnology · doi:10.1038/nbt1041 · Cited by 285 · see citing works

Metabolite annotations based on the integration of mass spectral information

Iijima, Y., Nakamura, Y., Ogata, Y., Tanaka, K., Sakurai, N., Suda, K., Suzuki, T., Suzuki, H., Okazaki, K., Kitayama, M., et al. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2008.03434.x · Cited by 283 · see citing works

Composition and content of glucosinolates in developing Arabidopsis thaliana

Petersen, B. L., Chen, S., Hansen, C., Olsen, C. E., & Halkier, B. A. (2002) · Planta · doi:10.1007/s004250100659 · Cited by 272 · see citing works

XCMS2: Processing Tandem Mass Spectrometry Data for Metabolite Identification and Structural Characterization

Benton, H. P., Wong, D. M., Trauger, S. A., & Siuzdak, G. E. (2008) · Analytical Chemistry · doi:10.1021/ac800795f · Cited by 266 · see citing works

MetaCyc and AraCyc. Metabolic Pathway Databases for Plant Research

Zhang, P., Foerster, H., Tissier, C. P., Mueller, L. A., Paley, S., Karp, P. D., & Rhee, S. Y. (2005) · PLANT PHYSIOLOGY · doi:10.1104/pp.105.060376 · Cited by 236 · see citing works

The critical evaluation of a comprehensive mass spectral library

Ausloos, P., Clifton, C. L., Lias, S. G., Mikaya, A. I., Stein, S. E., Tchekhovskoi, D. V., Sparkman, O. D., Zaikin, V., & Zhu, D. (1999) · Journal of the American Society for Mass Spectrometry · doi:10.1016/s1044-0305(98)00159-7 · Cited by 229 · see citing works

Chemometric contributions to the evolution of metabonomics: mathematical solutions to characterising and interpreting complex biological NMR spectra

Holmes, E. C., & Antti, H. (2002) · The Analyst · doi:10.1039/b208254n · Cited by 228 · see citing works

MS/MS spectral tag‐based annotation of non‐targeted profile of plant secondary metabolites

Matsuda, F., Yonekura‐Sakakibara, K., Niida, R., Kuromori, T., Shinozaki, K., & Saito, K. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2008.03705.x · Cited by 223 · see citing works

KNApSAcK: A Comprehensive Species-Metabolite Relationship Database

Shinbo, Y., Nakamura, Y., Altaf‐Ul‐Amin, M., Asahi, H., Kurokawa, K., Arita, M., Saito, K., Ohta, D., Shibata, D., & Kanaya, S. (2006) · Springer eBooks · doi:10.1007/3-540-29782-0_13 · Cited by 217 · see citing works

Setup and Annotation of Metabolomic Experiments by Integrating Biological and Mass Spectrometric Metadata

Fiehn, O., Wohlgemuth, G., & Scholz, M. (2005) · Lecture notes in computer science · doi:10.1007/11530084_18 · Cited by 210 · see citing works

Integrating genomics and metabolomics for engineering plant metabolic pathways

Oksman‐Caldentey, K., & Saito, K. (2005) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2005.02.007 · Cited by 208 · see citing works

Non-targeted analysis of spatial metabolite composition in strawberry (Fragaria×ananassa) flowers

Hanhineva, K., Rogachev, I., Kokko, H., Mintz-Oron, S., Venger, I., Kärenlampi, S. O., & Aharoni, A. (2008) · Phytochemistry · doi:10.1016/j.phytochem.2008.07.009 · Cited by 205 · see citing works

MassTRIX: mass translator into pathways

Suhre, K., & Schmitt‐Kopplin, P. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn194 · Cited by 203 · see citing works

Cytochrome P450 CYP710A Encodes the Sterol C-22 Desaturase in Arabidopsis and Tomato

Morikawa, T., Mizutani, M., Aoki, N., Watanabe, B., Saga, H., Saito, S., Oikawa, A., Suzuki, H., Sakurai, N., Shibata, D., et al. (2006) · The Plant Cell · doi:10.1105/tpc.105.036012 · Cited by 200 · see citing works

Lotus japonicus Metabolic Profiling. Development of Gas Chromatography-Mass Spectrometry Resources for the Study of Plant-Microbe Interactions

Desbrosses, G., Kopka, J., & Udvardi, M. K. (2005) · PLANT PHYSIOLOGY · doi:10.1104/pp.104.054957 · Cited by 197 · see citing works

Metabolomics spectral formatting, alignment and conversion tools (MSFACTs)

Duran, A. L., Yang, J., Wang, L., & Sumner, L. W. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg315 · Cited by 190 · see citing works

ChemDB: a public database of small molecules and related chemoinformatics resources

Chen, J. H., Swamidass, S. J., Dou, Y., Bruand, J., & Baldi, P. (2005) · Bioinformatics · doi:10.1093/bioinformatics/bti683 · Cited by 186 · see citing works

Multidimensional annotation of the Escherichia coli K-12 genome

Karp, P. D., Keseler, I. M., Shearer, A. G., Latendresse, M., Krummenacker, M., Paley, S., Paulsen, I. T., Collado‐Vides, J., Gama‐Castro, S., Peralta-Gil, M., et al. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm740 · Cited by 184 · see citing works

Understanding mass spectra--a basic approach

Smith, R. M. (1999) · Choice Reviews Online · doi:10.5860/choice.36-6292 · Cited by 180 · see citing works

Retention index thresholds for compound matching in GC–MS metabolite profiling

Strehmel, N., Hummel, J., Erban, A., Strassburg, K., & Kopka, J. (2008) · Journal of Chromatography B · doi:10.1016/j.jchromb.2008.04.042 · Cited by 178 · see citing works

Metabolic networks of Cucurbita maxima phloem

Fiehn, O. (2003) · Phytochemistry · doi:10.1016/s0031-9422(02)00715-x · Cited by 166 · see citing works

Prediction and Classification of Drug Toxicity Using Probabilistic Modeling of Temporal Metabolic Data: The Consortium on Metabonomic Toxicology Screening Approach

Ebbels, T. M. D., Keun, H. C., Beckonert, O. P., Bollard, M. E., Lindon, J. C., Holmes, E. C., & Nicholson, J. K. (2007) · Journal of Proteome Research · doi:10.1021/pr0703021 · Cited by 163 · see citing works

KaPPA-View. A Web-Based Analysis Tool for Integration of Transcript and Metabolite Data on Plant Metabolic Pathway Maps

Tokimatsu, T., Sakurai, N., Suzuki, H., Ohta, H., Nishitani, K., Koyama, T., Umezawa, T., Misawa, N., Saito, K., & Shibata, D. (2005) · PLANT PHYSIOLOGY · doi:10.1104/pp.105.060525 · Cited by 159 · see citing works

ChemDB update—full-text search and virtual chemical space

Chen, J. H., Linstead, E. J., Swamidass, S. J., Wang, D. Y. Q., & Baldi, P. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm341 · Cited by 136 · see citing works

High-Resolution Direct Infusion-Based Mass Spectrometry in Combination with Whole 13 C Metabolome Isotope Labeling Allows Unambiguous Assignment of Chemical Sum Formulas

Giavalisco, P., Hummel, J., Lisec, J., Inostroza, A. C., Catchpole, G., & Willmitzer, L. (2008) · Analytical Chemistry · doi:10.1021/ac8014627 · Cited by 125 · see citing works

The future of metabolic phytochemistry: Larger numbers of metabolites, higher resolution, greater understanding

Fernie, A. R. (2007) · Phytochemistry · doi:10.1016/j.phytochem.2007.07.010 · Cited by 114 · see citing works

GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling

Huege, J., Ronan Sulpice, A., Gibon, Y., Lisec, J., Koehl, K., & Kopka, J. (2007) · Phytochemistry · doi:10.1016/j.phytochem.2007.03.026 · Cited by 112 · see citing works

A Structure-based Anatomy of the E.coli Metabolome

Nobeli, I., Ponstingl, H., Krissinel, E., & Thornton, J. M. (2003) · Journal of Molecular Biology · doi:10.1016/j.jmb.2003.10.008 · Cited by 107 · see citing works

Clarification of Pathway-Specific Inhibition by Fourier Transform Ion Cyclotron Resonance/Mass Spectrometry-Based Metabolic Phenotyping Studies

Oikawa, A., Nakamura, Y. K., Ogura, T., Kimura, A. K., Suzuki, H., Sakurai, N., Shinbo, Y., Shibata, D., Kanaya, S., & Ohta, D. (2006) · PLANT PHYSIOLOGY · doi:10.1104/pp.106.080317 · Cited by 105 · see citing works

Metabolomics

(2007) · Topics in current genetics · doi:10.1007/978-3-540-74719-2 · Cited by 96 · see citing works

Metabolite profile analysis: from raw data to regression and classification

Steinfath, M., Groth, D., Lisec, J., & Selbig, J. (2007) · Physiologia Plantarum · doi:10.1111/j.1399-3054.2007.01006.x · Cited by 88 · see citing works

A bioinformatician's view of the metabolome

Nobeli, I., & Thornton, J. M. (2006) · BioEssays · doi:10.1002/bies.20414 · Cited by 86 · see citing works

A non-directed approach to the differential analysis of multiple LC–MS-derived metabolic profiles

Vorst, O., Vos, C. H. R. D., Lommen, A., Staps, R. V., Visser, R. G. F., Bino, R. J., & Hall, R. D. (2005) · Metabolomics · doi:10.1007/s11306-005-4432-7 · Cited by 82 · see citing works

Comparison of algorithms and databases for matching unknown mass spectra

McLafferty, F. W., Zhang, M., Stauffer, D. B., & Loh, S. Y. (1998) · Journal of the American Society for Mass Spectrometry · doi:10.1016/s1044-0305(97)00235-3 · Cited by 82 · see citing works

MMsINC: a large-scale chemoinformatics database

Masciocchi, J., Frau, G., Fanton, M., Sturlese, M., Floris, M., Pireddu, L., Palla, P., Cedrati, F. C., Rodriguez‐Tomé, P., & Moro, S. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn727 · Cited by 75 · see citing works

Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry

Takahashi, H., Kai, K., Shinbo, Y., Tanaka, K., Ohta, D., Oshima, T., Altaf‐Ul‐Amin, M., Kurokawa, K., Ogasawara, N., & Kanaya, S. (2008) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-008-2195-5 · Cited by 70 · see citing works

MetaCrop: a detailed database of crop plant metabolism

Grafahrend‐Belau, E., Weise, S. F., Dirk Koschützki, A., Scholz, U., Junker, B. H., & Schreiber, F. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm835 · Cited by 51 · see citing works

Correcting ligands, metabolites, and pathways

Ott, M. A., & Vriend, G. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-517 · Cited by 51 · see citing works

Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database

Arita, M., & Suwa, K. (2008) · BioData Mining · doi:10.1186/1756-0381-1-7 · Cited by 48 · see citing works

Metabolic profiling using Fourier-transform ion-cyclotron-resonance mass spectrometry

Ohta, D., Shibata, D., & Kanaya, S. (2007) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-007-1650-z · Cited by 42 · see citing works

Comparison of ESI-MS Spectra in MassBank Database

Horai, H., Arita, M., & Nishi­oka, T. (2008) · International Conference on Biomedical Engineering and Informatics (BMEI) · doi:10.1109/bmei.2008.339 · Cited by 37 · see citing works

A Cheminformatic Toolkit for Mining Biomedical Knowledge

Rosania, G. R., Crippen, G. M., WOOLF, P. J., States, D. J., & Shedden, K. (2007) · Pharmaceutical Research · doi:10.1007/s11095-007-9285-5 · Cited by 25 · see citing works

The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity

Saito, K., Yonekura‐Sakakibara, K., Nakabayashi, R., Higashi, Y., Yamazaki, M., Tohge, T., & Fernie, A. R. (2013) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2013.02.001 · Cited by 902 · see citing works

The use of metabolomics to dissect plant responses to abiotic stresses

Obata, T., & Fernie, A. R. (2012) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-012-1091-5 · Cited by 912 · see citing works

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

Saito, K., & Matsuda, F. (2009) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.043008.092035 · Cited by 749 · see citing works

JUNGBRUNNEN1 , a Reactive Oxygen Species–Responsive NAC Transcription Factor, Regulates Longevity in Arabidopsis

Wu, A., Allu, A. D., Garapati, P., Siddiqui, H., Dortay, H., Zanor, M. I., Asensi-Fabado, M. A., Munné‐Bosch, S., António, C., Tohge, T., et al. (2012) · The Plant Cell · doi:10.1105/tpc.111.090894 · Cited by 604 · see citing works

The food metabolome: a window over dietary exposure

Scalbert, A., Brennan, L., Manach, C., Andres-Lacueva, C., Dragsted, L. O., Draper, J., Rappaport, S. M., van der Hooft, J. J., & Wishart, D. S. (2014) · The American Journal of Clinical Nutrition · doi:10.3945/ajcn.113.076133 · Cited by 519 · see citing works

Current practice of liquid chromatography–mass spectrometry in metabolomics and metabonomics

Gika, H., Theodoridis, G. A., Plumb, R. S., & Wilson, I. D. (2013) · Journal of Pharmaceutical and Biomedical Analysis · doi:10.1016/j.jpba.2013.06.032 · Cited by 442 · see citing works

Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis

Salem, M. A., de Souza, L. P., Serag, A., Fernie, A. R., Farag, M. A., Ezzat, S. M., & Alseekh, S. (2020) · Metabolites · doi:10.3390/metabo10010037 · Cited by 364 · see citing works

Elemental formula annotation of polar and lipophilic metabolites using 13 C, 15 N and 34 S isotope labelling, in combination with high‐resolution mass spectrometry

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Metabolomics for Plant Improvement: Status and Prospects

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Identification of Urinary Biomarkers of Colon Inflammation in IL10-/- Mice Using Short‐Column LCMS Metabolomics

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