Repair and Regeneration of the Respiratory System: Complexity, Plasticity, and Mechanisms of Lung Stem Cell Function

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1. Cilia-related gene signature in the nasal mucosa correlates with disease severity and outcomes in critical respiratory syncytial virus bronchiolitis
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2. Giving New Identities to Alveolar Epithelial Type I Cells
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3. Distinct populations of lung capillary endothelial cells and their functional significance
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5. Stem and Progenitor Cells in Human Cardiopulmonary Development and Regeneration
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6. Presence of N-acetylglucosamine residues on the surface coating of bronchioloalveolar cells during rat postnatal development: What is their purpose?
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7. Chronic Salmonella Infection Induced Intestinal Fibrosis
   Bernard C. Lo, Samuel B. Shin, Melina Messing, Kelly Marshall McNagny · 2019 · Journal of Visualized Experiments
8. Standards in Biologic Lesions: Cutaneous Thermal Injury and Inhalation Injury Working Group 2018 Meeting Proceedings
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9. Reduction of Emphysema Severity by Human Umbilical Cord-Derived Mesenchymal Stem Cells in Mice
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10. Niche-Dependent Regulation of Lkb1 in the Proliferation of Lung Epithelial Progenitor Cells
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11. Single-cell RNA sequencing of mouse lower respiratory tract epithelial cells: A meta-analysis
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12. Mimicking acute airway tissue damage using femtosecond laser nanosurgery in airway organoids
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13. Intercellular Communication in Airway Epithelial Cell Regeneration: Potential Roles of Connexins and Pannexins
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14. Blood flow‐induced angiocrine signals promote organ growth and regeneration
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15. The LIM-domain only protein 4 contributes to lung epithelial cell proliferation but is not essential for tumor progression
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16. α1,3-Fucosyltransferase-IX, an enzyme of pulmonary endogenous lung stem cell marker SSEA-1, alleviates experimental bronchopulmonary dysplasia
    Sushma Chaubey, Yaldah Mohammad Nader, Dilip Shah, Ogan K Kumova, Varsha M. Prahaladan, Alison J. Carey, STURE M. ANDERSSON, Vineet Bhandari · 2020 · Pediatric Research
17. Application of autologous SOX9+ airway basal cells in patients with bronchiectasis
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18. RETRACTED: Analyzing cross‐talk of EPO and EGF genes along with evaluating therapeutic potential of Cinnamomum verum in cigarette‐smoke‐induced lung pathophysiology in rat model
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19. Acute Respiratory Distress Syndrome
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20. Alveolar Epithelial Cells Burn Fat to Survive Acute Lung Injury
    Robert B. Hamanaka, Gökhan M. Mutlu · 2018 · American Journal of Respiratory Cell and Molecular Biology
21. Temporal Notch signaling and Hes-mediated competitive de-repression regulate mucociliary cell fates in Xenopus
    Magdalena Maria Brislinger-Engelhardt, Mona Hansen, Tim Litwin, Maximilian Haas, Aisha Andricek, Fabian Lorenz, Africa Temporal-Plo, Sarah A. Bowden, Sandra Hägele, Damian Weber et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
22. Promoting epithelial regeneration in chemically induced acute lung injury through Sox9-positive alveolar type 2 epithelial cells
    Chao Cao, Obulkasim Memete, Yu Dun, Lin Zhang, Fuli Liu, Daikun He, Jian Zhou, Yiru Shao, Jie Shen · 2025 · Stem Cell Research & Therapy
23. Beyond borders: engineering organ-targeted immunotherapies to overcome site-specific barriers in cancer
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24. Epithelial cells in chronic obstructive pulmonary disease exacerbations: Targets for lung repair
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25. Age-Dependent Inflammatory Microenvironment Mediates Alveolar Regeneration
    Rui Quan, Chenhong Shi, Bing Fang, Yanan Sun, Taiqi Qu, Xifan Wang, Ran Wang, Yiran Zhang, Fazheng Ren, Yixuan Li · 2024 · International Journal of Molecular Sciences
26. The cardenolides ouabain and reevesioside A promote FGF2 secretion and subsequent FGFR1 phosphorylation via converged ERK1/2 activation
    Guan-Hao Zhao, Yaqi Qiu, Cheng‐Wei Yang, Ih‐Sheng Chen, Chin‐Yu Chen, Shiow‐Ju Lee · 2019 · Biochemical Pharmacology
27. Ferret respiratory disease models for the study of lung stem cells
    Albert C. Pai, Kalpaj R. Parekh, John F. Engelhardt, Thomas J. Lynch · 2021 · European Respiratory Society eBooks
28. Alveolar stem cells in lung development and regrowth
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29. Ciliated (FOXJ1+) Cells Display Reduced Ferritin Light Chain in the Airways of Idiopathic Pulmonary Fibrosis Patients
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30. Single-cell transcriptome analysis reveals cellular heterogeneity and highlights Fstl1-regulated alveolar myofibroblasts in mouse lung at birth
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31. Activation of thousands of genes in the lungs and kidneys by sepsis is countered by the selective nuclear blockade
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32. Human iPSC-Based Model of COPD to Investigate Disease Mechanisms, Predict SARS-COV-2 Outcome, and Test Preventive Immunotherapy
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33. Lung allograft loss: naming helps seeing… andvice versa!
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34. Lung organoids: powerful tools for studying lung stem cells and diseases
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35. Prmt5 promotes ciliated cell specification of airway epithelial progenitors via transcriptional inhibition of Tp63
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36. Repairing Mechanisms for Distal Airway Injuries and Related Targeted Therapeutics for Chronic Lung Diseases
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37. Distinctive Roles and Mechanisms of Human Neutrophil Peptides in Experimental Sepsis and Acute Respiratory Distress Syndrome
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38. Bioreactors in Regenerative Medicine
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39. Early Development of the Mammalian Lung-Branching Morphogenesis
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40. Local photo-crosslinking of native tissue matrix regulates cell function
    Donia W Ahmed, Matthew L. Tan, Jackson Gabbard, Yuchen Liu, Michael M. Hu, Miriam Stevens, Firaol S. Midekssa, Lin Han B, Rachel L. Zemans, Brendon M. Baker et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
41. CD34+CD45+ cells promote alveolar macrophage efferocytosis to alleviate phosgene-induced acute lung injury in rats
    Xuanrong Bao, Yu Dun, Hanbing Hu, Yuedong Tang, Fuli Liu, Jian Zhou, Jie Shen · 2025 · International Immunopharmacology
42. Disruption of E-cadherin in the airway led to dysplastic stressed cells and asthma-like phenotypes
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43. Targeting Multiple Pathophysiological Axes in COPD: Nanomaterial Advances
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44. Development of a Polidocanol-based Human In Vitro Model to Explore Airway Epithelial Repair
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45. Regenerative Therapy for Chronic Obstructive Pulmonary Disease, a Retrospective Study of Benefits and Safety
    Jack Coleman, Melissa M Rubio · 2018 · Stem Cell & Regenerative Medicine
46. The Development of Lung Tissue Engineering: From Biomaterials to Multicellular Systems
    Jingge Ma, Chengtie Wu, Jin‐Fu Xu · 2024 · Advanced Healthcare Materials
47. Identification of a Novel Subset of Human Airway Epithelial Basal Stem Cells
    Christopher J. Cheng, Parul Katoch, Yongping Zhong, Claire T. Higgins, Maria Moredock, Matthew E.K. Chang, Mark R. Flory, Scott H. Randell, Philip R. Streeter · 2024 · International Journal of Molecular Sciences
48. Distal Airway Stem Cells are Essential for Lung Regeneration
    T. Deuse, Sonja Schrepfer · 2015 · Transplantation
49. Stem and Progenitor Cells of the Trachea and Proximal Airways
    Ahmed E. Hegab, Tomoko Betsuyaku, Brigitte N. Gomperts · 2015 · Stem cell biology and regenerative medicine
50. The Function of Epithelial Cells in Pulmonary Fibrosis
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51. Extracorporeal Shock Waves Increase Markers of Cellular Proliferation in Bronchial Epithelium and in Primary Bronchial Fibroblasts of COPD Patients
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52. Lung organoids: target cells for understanding respiratory diseases
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53. Alveolar epithelial TET2 is not involved in the development of bleomycin‐induced pulmonary fibrosis
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54. Stem Cell Safety and Sterility Testing: A Promising Approach in Regenerative Medicine
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55. Empowering human lung development
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56. Polarity in respiratory development, homeostasis and disease
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57. Preterm ovine respiratory epithelial cell responses to mechanical ventilation, lipopolysaccharide, and interleukin-13
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58. Airway epithelium regeneration by photoactivated basal cells
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59. Long non‐coding ribonucleic acid zinc finger E‐box binding homeobox 1 antisense RNA 1 regulates myocardial fibrosis in diabetes through the Hippo–Yes‐associated protein signaling pathway
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60. Protein Kinase Cζ Inhibitor Promotes Resolution of Bleomycin-Induced Acute Lung Injury
    Luis G. Vargas Buonfiglio, Mosaab Bagegni, Jennifer A. Borcherding, Jessica C. Sieren, Juan Carlos Caraballo, Andrew Reger, Joseph Zabner, Xiaopeng Li, Alejandro P. Comellas · 2016 · American Journal of Respiratory Cell and Molecular Biology
61. Understanding mechanisms yields novel approaches to reduce radiotherapy-related xerostomia
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62. Influenza-Mediated Lung Infection Models
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63. Oxidative Stress and Smoke-Related Lung Diseases: A Tentative Approach Through the Blood, Lungs, and Gut
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64. Cell identity conversion in liver regeneration after injury
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65. Tracing the potential of lung progenitors
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66. Mechanisms of Neonatal Lung Injury
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67. Efficient Differentiation of Mouse Induced Pluripotent Stem Cells into Alveolar Epithelium Type II with a BRD4 Inhibitor
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68. Call for Papers on “Lung Diseases in Reverse Translation: Bedside to the Bench”
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69. A novel anti-influenza combined therapy assessed by single cell RNA-sequencing
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70. TAS-Seq: A Robust and Sensitive Amplification Method for Beads-based ScRNA-seq
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71. Immunomodulatory Mechanisms of ILC2 in Lung Development: Emerging Insights Into Bronchopulmonary Dysplasia Pathogenesis
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72. Novel NLRP3 inhibitors mitigate acute radiation-induced lung injury by suppressing pyroptosis in alveolar epithelial cells
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73. Single-cell multiomics analysis reveals CTCF as a key regulator of lung morphogenesis and progenitor maintenance
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74. Biomimetic dual-functional hydrogel for pulmonary injury repair: Enhancing sealing and tissue regeneration
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75. Withdrawal Notice
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76. Culture and expansion of murine proximal airway basal stem cells
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77. Autocrine insulin-like growth factor 2 signaling as a potential target in the associated development of pulmonary emphysema and cancer in smokers
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78. Effect of CTMP1 gene on pulmonary fibrosis
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79. Tissue-specific decellularized extracellular matrix rich in collagen, glycoproteins, and proteoglycans and its applications in advanced organoid engineering: A review
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80. Tumor organoid and tumor-on-a-chip equipped next generation precision medicine
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81. Induced pluripotent stem cells for generating lung airway stem cells and modelling respiratory disease
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82. TNF-α Preconditioning Promotes a Proangiogenic Phenotype in hiPSC-Derived Vascular Smooth Muscle Cells
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83. Comorbidity of Pulmonary Fibrosis and COPD/Emphysema: Research Status, Trends, and Future Directions --------- A Bibliometric Analysis from 2004 to 2023
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84. Engraftment of wild-type alveolar type II epithelial cells in surfactant protein C deficient mice
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85. Chronic Lung Pathologies That Require Repair and Regeneration
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86. Tips from the embryonic lung
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87. Lung Alveolar Repair: Not All Cells Are Equal
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88. Presence of N-acetylneuraminic acid in the lung during postnatal development
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89. The Isolation and In Vitro Differentiation of Primary Fetal Baboon Tracheal Epithelial Cells for the Study of SARS-CoV-2 Host-Virus Interactions
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90. Tissue organoid models and applications
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91. Nuclear Factor-κB Keeps Basal Cells Undifferentiated in Congenital Diaphragmatic Hernia
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92. hPSC-Derived Distal Lung Organoids Reveal Respiratory Airway Secretory Cells Acting as Immune Sentinels in Human Distal Airways
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93. Differentiation of embryonic stem cells into lung-like cells using lung-derived matrix sheets
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94. Development of a stable inhalable dry powder formulation with osteoglycin fragment for alveolar epithelial repair
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95. Modeling functional responses to pollutant exposure using modular hydrogel supported vascularized alveolosphere-on-a-chip
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96. Fzd2 orchestrates canonical and non-canonical Wnt signaling to regulate lung development and fibrosis
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97. Development of a three-dimensional airway organoid-pillar dish (3D AO-PD) platform for particulate matter-induced airway toxicity analysis
    Eunyoung Lee, Sang‐Yun Lee, Yu-Jeong Seong, Jeong Uk Lim, Jae-Young Jeong, Ji-O Ryu, Yongki Hwang, Hyobin Won, Seok Whan Moon, Young Du Kim et al. · 2025 · Materials Today Bio
98. Research Advances and Disease Modeling in Respiratory Organoids
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99. Hypercapnia Effects on Lung Function
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100. Discovery and optimization of novel TEAD inhibitors for in vivo investigation against hepatocellular carcinoma
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