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Engineering Hydrogels for Affinity-Based Release of Therapeutic Proteins

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Interfacial water molecules in SH3 interactions: Getting the full picture on polyproline recognition by protein–protein interaction domains

Ruano, A. Z., & Luque, I. (2012) · FEBS Letters · doi:10.1016/j.febslet.2012.04.057 · Cited by 29 · see citing works

Myosin VIIA regulates microvillus morphogenesis and interacts with cadherin Cad99C in Drosophila oogenesis

Glowinski, C., Liu, R.-H. S., Chen, X., Darabie, A. A., & Godt, D. (2014) · Journal of Cell Science · doi:10.1242/jcs.099242 · Cited by 28 · see citing works

SH3 domains come of age

Kay, B. K. (2012) · FEBS Letters · doi:10.1016/j.febslet.2012.05.025 · Cited by 28 · see citing works

Mapping low-affinity/high-specificity peptide–protein interactions using ligand-footprinting mass spectrometry

Parker, B. W., Goncz, E., Krist, D. T., Statsyuk, A. V., Nesvizhskii, A. I., & Weiss, E. L. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1819533116 · Cited by 28 · see citing works

Engineered SH2 Domains for Targeted Phosphoproteomics

Martyn, G. D., Veggiani, G., Kusebauch, U., Morrone, S. R., Yates, B. P., Singer, A. U., Tong, J., Manczyk, N., Gish, G. D., Sun, Z., et al. (2022) · ACS Chemical Biology · doi:10.1021/acschembio.2c00051 · Cited by 26 · see citing works

Atomic resolution structures of the c-Src SH3 domain in complex with two high-affinity peptides from classes I and II

Bacarizo, J., & Cámara-Artigas, A. (2013) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444913001522 · Cited by 22 · see citing works

The apoptotic engulfment protein Ced-6 participates in clathrin-mediated yolk uptake inDrosophilaegg chambers

Jha, A., Watkins, S. C., & Traub, L. M. (2012) · Molecular Biology of the Cell · doi:10.1091/mbc.e11-11-0939 · Cited by 21 · see citing works

AMP-Activated Protein Kinase β-Subunit Requires Internal Motion for Optimal Carbohydrate Binding

Bieri, M., Mobbs, J. I., Koay, A. Z., Louey, G., Mok, Y.-F., Hatters, D. M., Park, J., Park, K. H., Neumann, D., Stapleton, D., et al. (2012) · Biophysical Journal · doi:10.1016/j.bpj.2011.12.012 · Cited by 20 · see citing works

Surface Loops in a Single SH2 Domain Are Capable of Encoding the Spectrum of Specificity of the SH2 Family*

Liu, H., Huang, H., Voss, C., Kaneko, T., Qin, W. T., Sidhu, S. S., & Li, S. S. ‐. (2018) · Molecular & Cellular Proteomics · doi:10.1074/mcp.ra118.001123 · Cited by 18 · see citing works

Large-Scale Screening of Preferred Interactions of Human Src Homology-3 (SH3) Domains Using Native Target Proteins as Affinity Ligands

Kazlauskas, A., Schmotz, C., Kesti, T., Hepojoki, J., Kleino, I., Kaneko, T., Li, S. S. ‐., & Saksela, K. (2016) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m116.060483 · Cited by 16 · see citing works

DomPep—A General Method for Predicting Modular Domain-Mediated Protein-Protein Interactions

Li, L., Zhao, B. T., Du, J., Zhang, K., Ling, C. X., & Li, S. S. ‐. (2011) · PLoS ONE · doi:10.1371/journal.pone.0025528 · Cited by 13 · see citing works

Engineered SH2 domains with tailored specificities and enhanced affinities for phosphoproteome analysis

Veggiani, G., Huang, H., Yates, B. P., Tong, J., Kaneko, T., Joshi, R., Li, S. S. ‐., Moran, M. F., Gish, G. D., & Sidhu, S. S. (2018) · Protein Science · doi:10.1002/pro.3551 · Cited by 13 · see citing works

MotifAnalyzer‐PDZ : A computational program to investigate the evolution of PDZ‐binding target specificity

Valgardson, J. D., Cosbey, R., Houser, P. R., Rupp, M., Bronkhorst, R. V., Lee, M., Jagodzinski, F., & Amacher, J. F. (2019) · Protein Science · doi:10.1002/pro.3741 · Cited by 13 · see citing works

The Role of Backbone Hydrogen Bonds in the Transition State for Protein Folding of a PDZ Domain

Pedersen, S. W., Hultqvist, G., Strømgaard, K., & Jemth, P. (2014) · PLoS ONE · doi:10.1371/journal.pone.0095619 · Cited by 11 · see citing works

Creation of Phosphotyrosine Superbinders by Directed Evolution of an SH2 Domain

Huang, H., Kaneko, T., Sidhu, S. S., & Li, S. S. ‐. (2017) · Methods in molecular biology · doi:10.1007/978-1-4939-6762-9_13 · Cited by 11 · see citing works

Most yeast SH3 domains bind peptide targets with high intrinsic specificity

Brown, T., Brown, N., & Stollar, E. J. (2018) · PLoS ONE · doi:10.1371/journal.pone.0193128 · Cited by 11 · see citing works

Identification of two distinct peptide-binding pockets in the SH3 domain of human mixed-lineage kinase 3

Kokoszka, M., Kall, S. L., Khosla, S., McGinnis, J. E., Lavie, A., & Kay, B. K. (2018) · Journal of Biological Chemistry · doi:10.1074/jbc.ra117.000262 · Cited by 11 · see citing works

Conformational Strain Indicated by Ramachandran Angles for the Protein Backbone Is Only Weakly Related to the Flexibility

Ravikumar, A., de Brevern, A. G., & Srinivasan, N. (2021) · The Journal of Physical Chemistry B · doi:10.1021/acs.jpcb.1c00168 · Cited by 10 · see citing works

Adapting to change: resolving the dynamic and dual roles of NCK1 and NCK2

Teyssier, V., Williamson, C. R., Shata, E., Rosen, S. P., Jones, N., & Bisson, N. (2024) · Biochemical Journal · doi:10.1042/bcj20230232 · Cited by 5 · see citing works

Chemical specificity and conformational flexibility in proteinase–inhibitor interaction: Scaffolds for promiscuous binding

Vishwanath, S., & Srinivasan, N. (2014) · Progress in Biophysics and Molecular Biology · doi:10.1016/j.pbiomolbio.2014.08.003 · Cited by 4 · see citing works

LiF-MS: Mapping unstructured peptide-protein interactions using Ligand-Footprinting Mass SpectrometryPreprint

Parker, B. W., Goncz, E., Krist, D. T., Statsyuk, A. V., Nesvizhskii, A. I., & Weiss, E. L. (2018) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/361857 · Cited by 3 · see citing works

Versatility of SH3 Domains in the Cellular Machinery

Azuaga, A. I., & Atienza, S. C. (2015) · Springer eBooks · doi:10.1007/978-3-319-20098-9_3 · Cited by 2 · see citing works

Predicting and testing determinants of histidine-kinase functions by leveraging protein sequence information

Ashenberg, O. (2012) · DSpace@MIT (Massachusetts Institute of Technology) · Cited by 1 · see citing works

Design of protein-protein interaction specificity using computational methods and experimental library screening

Chen, T. S. (2012) · DSpace@MIT (Massachusetts Institute of Technology)

An albumin-binding domain as a scaffold for bispecific affinity proteins

Nilvebrant, J. (2012) · Diva portal (Dalarna University Library)

The conformation of the nSrc specificity-determining loop in the Src SH3 domain is modulated by a WX conserved sequence motif found in SH3 domains

Longshore‐Neate, F., Ceravolo, C., Masuga, C. D., Tahti, E. F., Blount, J. M., Smith, S. N., & Amacher, J. F. (2024) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2024.1487276

Etude structurale et fonctionnelle de la phosphatase humaine PTPN4

Maisonneuve, P. (2014) · theses.fr (ABES) · doi:10.70675/d828385dz7f66z41f6z8ffez97d6574b613a

SH3-like domains from Leuconostoc citreum ABK-1 alternansucrase enables efficient enzyme immobilization

Charoenwongpaiboon, T., Chanket, W., Pichyangkura, R., & Wangpaiboon, K. (2026) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2026.154353

Surface Loops in a Single SH2 Domain Are Capable of Encoding the Spectrum of Specificity of the SH2 Family*

Liu, H., Huang, H., Voss, C., Kaneko, T., Qin, W. T., Sidhu, S. S., & Li, S. S. ‐. (2018) · Molecular & Cellular Proteomics · doi:10.1074/mcp.ra118.001123 · Cited by 18 · see citing works

Loops Govern SH2 Domain Specificity by Controlling Access to Binding Pockets

Kaneko, T., Huang, H., Zhao, B., Li, L., Liu, H., Voss, C. K., Wu, C., Schiller, M. R., & Li, S. S.-C. (2010) · Science Signaling · doi:10.1126/scisignal.2000796 · Cited by 146 · see citing works

Protein context shapes the specificity of domain-peptide interactions in vivoPreprint

Dionne, U., Bourgault, É., Dubé, A. K., Bradley, D. T. C., Chartier, F. J.-M., Dandage, R., Dibyachintan, S., Després, P. C., Gish, G. D., Lambert, J., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.05.18.103002

The multiple‐specificity landscape of modular peptide recognition domains

Gfeller, D., Butty, F., Wierzbicka, M., Verschueren, E., Vanhee, P., Huang, H., Ernst, A., Dar, N., Štagljar, I., Serrano, L. G., et al. (2011) · Molecular Systems Biology · doi:10.1038/msb.2011.18 · Cited by 84 · see citing works

The SH3 domain- a family of versatile peptide- and protein-recognition module

Kaneko, T. (2008) · Frontiers in bioscience · doi:10.2741/3053 · Cited by 192 · see citing works