The DOI matches its Crossref record; 183 of the 183 references it cites were found in a registry or an index.
Systems Metabolic Engineering Strategies: Integrating Systems and Synthetic Biology with Metabolic Engineering
Abstract
Metabolic engineering allows development of microbial strains efficiently producing chemicals and materials, but it requires much time, effort, and cost to make the strains industrially competitive. Systems metabolic engineering, which integrates tools and strategies of systems biology, synthetic biology, and evolutionary engineering with traditional metabolic engineering, has recently been used to facilitate development of high-performance strains. The past decade has witnessed this interdisciplinary strategy continuously being improved toward the development of industrially competitive overproducer strains. In this article, current trends in systems metabolic engineering including tools and strategies are reviewed, focusing on recent developments in selection of host strains, metabolic pathway reconstruction, tolerance enhancement, and metabolic flux optimization. Also, future challenges and prospects are discussed.
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Cites
Multiplex Genome Engineering Using CRISPR/Cas Systems
Cong, L., Ran, F. A., Cox, D., Lin, S., Barretto, R., Habib, N., Hsu, P. D., Wu, X., Jiang, W., Marraffini, L. A., et al. (2013) · Science · doi:10.1126/science.1231143 · Cited by 15,339
CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes
Gilbert, L. A., Larson, M. H., Morsut, L., Liu, Z., Brar, G. A., Torres, S. E., Stern-Ginossar, N., Brandman, O., Whitehead, E. H., Doudna, J. A., et al. (2013) · Cell · doi:10.1016/j.cell.2013.06.044 · Cited by 3,696
Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis
Yano, J. M., Yu, K., Donaldson, G. P., Shastri, G. G., Ann, P., Ma, L., Nagler, C. R., Ismagilov, R. F., Mazmanian, S. K., & Hsiao, E. Y. (2015) · Cell · doi:10.1016/j.cell.2015.02.047 · Cited by 3,614
High-level semi-synthetic production of the potent antimalarial artemisinin
Paddon, C. J., Westfall, P. J., Pitera, D. J., Benjamin, K., Fisher, K., McPhee, D., Leavell, M. D., Tai, A., Main, A., Eng, D., et al. (2013) · Nature · doi:10.1038/nature12051 · Cited by 2,060
Planning chemical syntheses with deep neural networks and symbolic AI
Segler, M. H. S., Preuss, M., & Waller, M. P. (2018) · Nature · doi:10.1038/nature25978 · Cited by 1,847
Programming cells by multiplex genome engineering and accelerated evolution
Wang, H. H., Isaacs, F. J., Carr, P. A., Sun, Z. Z., Xu, G., Forest, C. R., & Church, G. M. (2009) · Nature · doi:10.1038/nature08187 · Cited by 1,529
Editing DNA Methylation in the Mammalian Genome
Liu, X. S., Wu, H., Ji, X., Stelzer, Y., Wu, X., Czauderna, S., Shu, J., Dadon, D., Young, R. A., & Jaenisch, R. (2016) · Cell · doi:10.1016/j.cell.2016.08.056 · Cited by 1,224
Toward a Science of Metabolic Engineering
Bailey, J. E. (1991) · Science · doi:10.1126/science.2047876 · Cited by 1,165
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
Blin, K., Wolf, T., Chevrette, M. G., Lu, X., Schwalen, C. J., Kautsar, S. A., Suarez Duran, H. G., de los Santos, E. L. C., Kim, H. U., Nave, M., et al. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx319 · Cited by 1,158
Self-citationMetabolic engineering of Escherichia coli for direct production of 1,4-butanediol
Yim, H., Haselbeck, R., Niu, W., Pujol-Baxley, C., Burgard, A., Boldt, J., Khandurina, J., Trawick, J. D., Osterhout, R. E., Stephen, R., et al. (2011) · Nature Chemical Biology · doi:10.1038/nchembio.580 · Cited by 1,114
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Cited by
Bacterial biopolymers: from pathogenesis to advanced materials
Moradali, M. F., & Rehm, B. H. A. (2020) · Nature Reviews Microbiology · doi:10.1038/s41579-019-0313-3 · Cited by 459
Powerful tools for productivity improvements in microalgal production
Sun, H., Wu, T., Chen, S. H. Y., Ren, Y., Yang, S., Huang, J., Mou, H., & Chen, F. (2021) · Renewable and Sustainable Energy Reviews · doi:10.1016/j.rser.2021.111609 · Cited by 42
Zhang, C., Chen, W., Dong, T., Wang, Y., Yao, M., Xiao, W., & Li, B. (2023) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2023.1141272 · Cited by 16
Johnson, Z., Anderson, D., Cheung, M. S., & Bohutskyi, P. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1569559 · Cited by 12
Metadata
- Authors
- Choi, K. R., Jang, W. D., Yang, D., Cho, J. S., Park, D., & Lee, S. Y.
- Venue
- Trends in Biotechnology
- Publisher
- Elsevier BV
- Published
- 2019-08
- Volume
- 37
- Issue
- 8
- Pages
- 817-837
- ISSN
- 0167-7799 (ISSN-L)
- OpenAlex
- W2912479692
- Cited by
- 566
- References
- 183
- FWCI
- 4.57
- Type
- journal article
- Language
- en
- Open access
- closed
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- Choi, K. R., Jang, W. D., Yang, D., Cho, J. S., Park, D., & Lee, S. Y. (2019). Systems Metabolic Engineering Strategies: Integrating Systems and Synthetic Biology with Metabolic Engineering. Trends in Biotechnology. https://doi.org/10.1016/j.tibtech.2019.01.003
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