Cited by 341Genomics and Phylogenetic StudiesGenetic diversity and population structureChromosomal and Genetic Variations

The era of reference genomes in conservation genomics

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Formenti, Giulio, Theissinger, Kathrin, Fernandes, Carlos, Bista, Iliana, Bombarely, Aureliano, Bleidorn, Christoph, Ciofi, Claudio, Crottini, Angelica +150 more·2022·Trends in Ecology & Evolution

Abstract

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics.

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Authors
Formenti, G., Theissinger, K., Fernandes, C., Bista, I., Bombarely, A., Bleidorn, C., Ciofi, C., Crottini, A., Godoy, J. A., Höglund, J., Malukiewicz, J., Mouton, A., Oomen, R. A., Paez, S., Palsbøll, P. J., Pampoulie, C., Ruiz-López, M. J., Svardal, H., Theofanopoulou, C., de Vries, J., Waldvogel, A.-M., Zhang, G., Mazzoni, C. J., Jarvis, E. D., Bálint, M., Formenti, G., Theissinger, K., Fernandes, C., Bista, I., Bombarely, A., Bleidorn, C., Čiampor, F., Ciofi, C., Crottini, A., Godoy, J. A., Hoglund, J., Malukiewicz, J., Mouton, A., Oomen, R. A., Paez, S., Palsbøll, P., Pampoulie, C., Ruiz-López, M. J., Svardal, H., Theofanopoulou, C., de Vries, J., Waldvogel, A.-M., Zhang, G., Mazzoni, C. J., Jarvis, E., Bálint, M., Aghayan, S. A., Alioto, T. S., Almudi, I., Alvarez, N., Alves, P. C., Amorim, I. R., Antunes, A., Arribas, P., Baldrian, P., Berg, P. R., Bertorelle, G., Böhne, A., Bonisoli-Alquati, A., Boštjančić, L. L., Boussau, B., Breton, C. M., Buzan, E., Campos, P. F., Carreras, C., Castro, L. F., Chueca, L. J., Conti, E., Cook-Deegan, R., Croll, D., Cunha, M. V., Delsuc, F., Dennis, A. B., Dimitrov, D., Faria, R., Favre, A., Fedrigo, O. D., Fernández, R., Ficetola, G. F., Flot, J.-F., Gabaldón, T., Galea Agius, D. R., Gallo, G. R., Giani, A. M., Gilbert, M. T. P., Grebenc, T., Guschanski, K., Guyot, R., Hausdorf, B., Hawlitschek, O., Heintzman, P. D., Heinze, B., Hiller, M., Husemann, M., Iannucci, A., Irisarri, I., Jakobsen, K. S., Jentoft, S., Klinga, P., Kloch, A., Kratochwil, C. F., Kusche, H., Layton, K. K. S., Leonard, J. A., Lerat, E., Liti, G., Manousaki, T., Marques-Bonet, T., Matos-Maraví, P., Matschiner, M., Maumus, F., Mc Cartney, A. M., Meiri, S., Melo-Ferreira, J., Mengual, X., Monaghan, M. T., Montagna, M., Mysłajek, R. W., Neiber, M. T., Nicolas, V., Novo, M., Ozretić, P., Palero, F., Pârvulescu, L., Pascual, M., Paulo, O. S., Pavlek, M., Pegueroles, C., Pellissier, L., Pesole, G., Primmer, C. R., Riesgo, A., Rüber, L., Rubolini, D., Salvi, D., Seehausen, O., Seidel, M., Secomandi, S., Studer, B., Theodoridis, S., Thines, M., Urban, L., Vasemägi, A., Vella, A., Vella, N., Vernes, S. C., Vernesi, C., Vieites, D. R., Waterhouse, R. M., Wheat, C. W., Wörheide, G., Wurm, Y., & Zammit, G.
Affiliations
  • University of Copenhagen (DK)
  • Center for Coastal Studies (US)
  • University of Lisbon (PT)
  • Consejo Superior de Investigaciones Científicas (ES)
  • University of Liège (BE)
  • Laboratoire de Biométrie et Biologie Evolutive (FR)
  • Campus-Institut Data Science (CIDAS) (DE)
  • University of Cambridge (GB)
  • Rockefeller University (US)
ORCID
Venue
Trends in Ecology & Evolution
Publisher
Elsevier BV
Published
2022-03
Volume
37
Issue
3
Pages
197-202
ISSN
0169-5347 (ISSN-L)
OpenAlex
W4207054657
Cited by
340
References
14
Citations by year
2026: 52 · 2025: 69 · 2024: 112 · 2023: 77 · 2022: 28 · 2021: 1
FWCI
23.72
Type
journal article
Language
en
Open access
Locations
  • Trends in Ecology & Evolution (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Kölner Universitäts PublikationsServer (Universität zu Köln) (publishedVersion)
  • DiRROS repository (University of Maribor) (publishedVersion, cc-by)
  • Research at the University of Copenhagen (University of Copenhagen) (publishedVersion, cc-by)
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  • SERVAL (Université de Lausanne) (publishedVersion, cc-by)
  • Zurich Open Repository and Archive (University of Zurich) (acceptedVersion, cc-by)
  • ORBi (University of Liège) (acceptedVersion, other-oa)
  • HAL (submittedVersion, other-oa)
  • Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano) (submittedVersion, cc-by)
  • DORA Eawag (Swiss Federal Institute of Aquatic Science and Technology (Eawag)) (submittedVersion, other-oa)
  • DORA WSL (Swiss Federal Institute for Forest, Snow and Landscape Research) (submittedVersion, other-oa)
  • Florence Research (University of Florence) (submittedVersion, other-oa)
  • Institutional Repository of the Ruđer Bošković Institute (Ruđer Bošković Institute) (submittedVersion, cc-by)
  • IRIS (submittedVersion, cc-by)
  • CINECA IRIS Institutional Research Information System (Fondazione Edmund Mach) (submittedVersion, cc-by)
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  • Archivio Istituzionale della Ricerca - Università degli Studi dell Aquila (submittedVersion, public-domain)
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Funders
  • Howard Hughes Medical Institute
  • Arizona State University
  • Institute for Research in Biomedicine
  • Helsingin Yliopisto
  • University of Otago
  • Villum Fonden (00025900)
  • University of Bern
  • Queen Mary University of London
  • Università degli Studi di Milano
  • Institut de Recherche pour le Développement
  • Fondazione Edmund Mach
  • Universitat Pompeu Fabra
  • University of St Andrews
  • University of Edinburgh
  • University of Aberdeen
  • Institut National de la Santé et de la Recherche Médicale
  • Universidad Complutense de Madrid
  • Eidgenössische Technische Hochschule Zürich
  • Euskal Herriko Unibertsitatea
  • Institució Catalana de Recerca i Estudis Avançats
  • Universität Potsdam
  • Akademie Věd České Republiky
  • Sveriges Lantbruksuniversitet
  • Tel Aviv University
  • Università degli Studi di Firenze
  • Consiglio Nazionale delle Ricerche
  • Centre National de la Recherche Scientifique (UMR 5558)
  • Universitetet i Bergen
  • Université de Neuchâtel
  • Universitetet i Oslo
  • Ludwig-Maximilians-Universität München
  • Universidade de Lisboa
  • Universitat de Barcelona
  • Università degli Studi dell'Aquila
  • Université de Lausanne
  • Uniwersytet Warszawski
  • Universität Zürich
  • Universidade do Porto
  • Uppsala Universitet
  • Université Paris-Saclay
  • Institut Ruđer Bošković
  • Muséum National d'Histoire Naturelle
  • Freie Universität Berlin
  • Eesti Maaülikool
  • Université de Montpellier
  • Stockholms Universitet
  • Senckenberg Biodiversität und Klima Forschungszentrum
  • Université de Lyon
  • Swiss Federal Institute for Forest, Snow and Landscape Research
  • Centro Interdisciplinar de Investigação Marinha e Ambiental
  • Sorbonne Université
  • Nature
  • Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
  • Max Planck Instituut voor Psycholinguïstiek
  • Directorate for Biological Sciences
  • Weill Cornell Medical College
  • Helsinki Institute of Life Science, Helsingin Yliopisto
  • Biotechnology and Biological Sciences Research Council (BB/T015683/1)
  • Leibniz-Gemeinschaft
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Chromosomal and Genetic Variations
Keywords
reference genome, conservation genomics, genome sequencing, genomic diversity, population genomics, functional genomics, biodiversity, genome organization
MeSH terms
Genome, Genomics, Biodiversity

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