The Value of Reference Genomes in the Conservation of Threatened Species

Accelerated modern human–induced species losses: Entering the sixth mass extinction

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Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

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PacBio Sequencing and its Applications

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Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers.

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Harnessing the power of RADseq for ecological and evolutionary genomics

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Analyses of pig genomes provide insight into porcine demography and evolution

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Introduction to Conservation Genetics

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The sequence and de novo assembly of the giant panda genome

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Bat White-Nose Syndrome: An Emerging Fungal Pathogen?

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Noninvasive genetic sampling: look before you leap

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Earth BioGenome Project: Sequencing life for the future of life

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SNP detection for massively parallel whole-genome resequencing

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Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions

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RADSeq: next-generation population genetics

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Informativeness of Genetic Markers for Inference of Ancestry*

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Importance of Genetic Variation to the Viability of Mammalian Populations

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A beginner's guide to eukaryotic genome annotation

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Sample Size and Statistical Power Calculation in Genetic Association Studies

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Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species

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Piercing the dark matter: bioinformatics of long-range sequencing and mapping

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Call for a Paradigm Shift in the Genetic Management of Fragmented Populations

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A field guide to whole‐genome sequencing, assembly and annotation

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The Ensembl Automatic Gene Annotation System

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Assembly: a resource for assembled genomes at NCBI

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Whole‐genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations

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Genetics and the conservation of natural populations: allozymes to genomes

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Fast, Cost-Effective Development of Species-Specific Microsatellite Markers by Genomic Sequencing

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Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference

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Conservation of biodiversity in the genomics era

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Mammal Decline and Recovery in Australia

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Rarity of a top predator triggers continent-wide collapse of mammal prey: dingoes and marsupials in Australia

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Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer

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Development of DArT Marker Platforms and Genetic Diversity Assessment of the U.S. Collection of the New Oilseed Crop Lesquerella and Related Species

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The Genome 10K Project: A Way Forward

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Rapid evolutionary response to a transmissible cancer in Tasmanian devils

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Disease and Endangered Species: The Black‐footed Ferret as a Recent Example

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A second transmissible cancer in Tasmanian devils

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Application of Microsatellite Markers in Conservation Genetics and Fisheries Management: Recent Advances in Population Structure Analysis and Conservation Strategies

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Adaptation and conservation insights from the koala genome

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Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species

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How and why should we implement genomics into conservation?

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Bridging the conservation genetics gap by identifying barriers to implementation for conservation practitioners

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Density trends and demographic signals uncover the long‐term impact of transmissible cancer in Tasmanian devils

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Effectiveness of microsatellite and SNP markers for parentage and identity analysis in species with low genetic diversity: the case of European bison

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Body mass and extinction risk in Australian marsupials: The ‘Critical Weight Range’ revisited

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Demographic and genetic management of captive populations

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Assessing runs of Homozygosity: a comparison of SNP Array and whole genome sequence low coverage data

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Biodiversity assessment using markers for ecologically important traits

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Third-generation sequencing and the future of genomicsPreprint

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Conservation genetics: Linking science with practice

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Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies

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MHC gene copy number variation in Tasmanian devils: implications for the spread of a contagious cancer

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Comparison of the effectiveness of microsatellites and SNP panels for genetic identification, traceability and assessment of parentage in an inbred Angus herd

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The Ensembl Analysis PipelinePreprint

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Contemporary Demographic Reconstruction Methods Are Robust to Genome Assembly Quality: A Case Study in Tasmanian Devils

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The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes

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Demonstration of immune responses against devil facial tumour disease in wild Tasmanian devils

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Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals

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Conserving adaptive potential: lessons from Tasmanian devils and their transmissible cancer

Hohenlohe, P. A., McCallum, H. I., Jones, M. E., Lawrance, M. F., Hamede, R., & Storfer, A. T. (2019) · Conservation Genetics · doi:10.1007/s10592-019-01157-5 · Cited by 89 · see citing works

Influence of genetic provenance and birth origin on productivity of the Tasmanian devil insurance population

Hogg, C. J., Ivy, J. A., Srb, C., Hockley, J., Lees, C. M., Hibbard, C., & Jones, M. E. (2015) · Conservation Genetics · doi:10.1007/s10592-015-0754-9 · Cited by 87 · see citing works

Performance of commonly requested destructive museum samples for mammalian genomic studies

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Complex problems need detailed solutions: Harnessing multiple data types to inform genetic management in the wild

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Reference Genomes from Distantly Related Species Can Be Used for Discovery of Single Nucleotide Polymorphisms to Inform Conservation Management

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From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species

Wright, B. R., Farquharson, K. A., McLennan, E. A., Belov, K., Hogg, C. J., & Grueber, C. E. (2019) · BMC Genomics · doi:10.1186/s12864-019-5806-y · Cited by 76 · see citing works

Inbreeding and selection shape genomic diversity in captive populations: Implications for the conservation of endangered species

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Genotyping-by-sequencing performance in selected livestock species

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Conservation of adaptive potential and functional diversity

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Founder relationships and conservation management: empirical kinships reveal the effect on breeding programmes when founders are assumed to be unrelated

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Development of a SNP-based assay for measuring genetic diversity in the Tasmanian devil insurance population

Wright, B. R., Morris, K., Grueber, C. E., Willet, C. E., Gooley, R. M., Hogg, C. J., O’Meally, D., Hamede, R., Jones, M. E., Wade, C. M., et al. (2015) · BMC Genomics · doi:10.1186/s12864-015-2020-4 · Cited by 65 · see citing works

Overview on the Role of Advance Genomics in Conservation Biology of Endangered Species

Khan, S., Nabi, G., Ullah, M. W., Yousaf, M., Manan, S., Siddique, R., & Hou, H. (2016) · International Journal of Genomics · doi:10.1155/2016/3460416 · Cited by 63 · see citing works

Large‐effect loci affect survival in Tasmanian devils ( Sarcophilus harrisii ) infected with a transmissible cancer

Margres, M. J., Jones, M. E., Epstein, B., Kerlin, D. H., Comte, S., Fox, S., Fraik, A. K., Hendricks, S. A., Huxtable, S. J., Lachish, S., et al. (2018) · Molecular Ecology · doi:10.1111/mec.14853 · Cited by 63 · see citing works

Lack of genetic diversity across diverse immune genes in an endangered mammal, the Tasmanian devil ( S arcophilus harrisii )

Morris, K., Wright, B. R., Grueber, C. E., Hogg, C. J., & Belov, K. (2015) · Molecular Ecology · doi:10.1111/mec.13291 · Cited by 61 · see citing works

Conservation implications of limited genetic diversity and population structure in Tasmanian devils (Sarcophilus harrisii)

Hendricks, S. A., Epstein, B., Schönfeld, B., Wiench, C., Hamede, R., Jones, M. E., Storfer, A. T., & Hohenlohe, P. A. (2017) · Conservation Genetics · doi:10.1007/s10592-017-0939-5 · Cited by 61 · see citing works

Empirical evaluation of variant calling accuracy using ultra-deep whole-genome sequencing data

Kishikawa, T., Momozawa, Y., Ozeki, T., Mushiroda, T., Inohara, H., Kamatani, Y., Kubo, M., & Okada, Y. (2019) · Scientific Reports · doi:10.1038/s41598-018-38346-0 · Cited by 61 · see citing works

Variants in the host genome may inhibit tumour growth in devil facial tumours: evidence from genome-wide association

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Metapopulation management of an Endangered species with limited genetic diversity in the presence of disease: the Tasmanian devil Sarcophilus harrisii

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No evidence of inbreeding depression in a Tasmanian devil insurance population despite significant variation in inbreeding

Gooley, R. M., Hogg, C. J., Belov, K., & Grueber, C. E. (2017) · Scientific Reports · doi:10.1038/s41598-017-02000-y · Cited by 51 · see citing works

A Tasmanian devil breeding program to support wild recovery*

Grueber, C. E., Peel, E., Wright, B. R., Hogg, C. J., & Belov, K. (2018) · Reproduction Fertility and Development · doi:10.1071/rd18152 · Cited by 49 · see citing works

The genomic basis of tumor regression in Tasmanian devils (Sarcophilus harrisii)

Margres, M. J., Ruiz‐Aravena, M., Hamede, R., Jones, M. E., Lawrance, M. F., Hendricks, S. A., Patton, A. H., Davis, B. W., Ostrander, E. A., McCallum, H. I., et al. (2018) · Genome Biology and Evolution · doi:10.1093/gbe/evy229 · Cited by 44 · see citing works

Cathelicidins in the Tasmanian devil (Sarcophilus harrisii)

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Pedigree reconstruction using molecular data reveals an early warning sign of gene diversity loss in an island population of Tasmanian devils (Sarcophilus harrisii)

McLennan, E. A., Gooley, R. M., Wise, P., Belov, K., Hogg, C. J., & Grueber, C. E. (2017) · Conservation Genetics · doi:10.1007/s10592-017-1017-8 · Cited by 43 · see citing works

Immunization Strategies Producing a Humoral IgG Immune Response against Devil Facial Tumor Disease in the Majority of Tasmanian Devils Destined for Wild Release

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Comparison of information content for microsatellites and SNPs in poultry and cattle

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Do it yourself guide to genome assembly

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Microsatellites for the Tasmanian devil (Sarcophilus laniarius)

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“Devil Tools & Tech”: A Synergy of Conservation Research and Management Practice

Hogg, C. J., Grueber, C. E., Pemberton, D., Fox, S., Lee, A. V., Ivy, J. A., & Belov, K. (2015) · Conservation Letters · doi:10.1111/conl.12221 · Cited by 40 · see citing works

Comparative genomics for biodiversity conservation

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Too much of a good thing? Finding the most informative genetic data set to answer conservation questions

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Diversity in the Toll-like receptor genes of the Tasmanian devil (Sarcophilus harrisii)

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Significant decline in anticancer immune capacity during puberty in the Tasmanian devil

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Landscape genetics of the Tasmanian devil: implications for spread of an infectious cancer

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Saving the Tasmanian Devil

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The Role of Genomics in Conservation and Reproductive Sciences

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Development of a Novel Mule Deer Genomic Assembly and Species-Diagnostic SNP Panel for Assessing Introgression in Mule Deer, White-Tailed Deer, and Their Interspecific Hybrids

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The effects of group versus intensive housing on the retention of genetic diversity in insurance populations

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Identification and analysis of divergent immune gene families within the Tasmanian devil genome

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Tasmanian devils with contagious cancer exhibit a constricted T-cell repertoire diversity

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Isolation and characterisation of 11 MHC-linked microsatellite loci in the Tasmanian devil (Sarcophilus harrisii)

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Emerging genomic applications in mammalian ecology, evolution, and conservation

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SNP panel development for genetic management of wild and domesticated white bass (Morone chrysops)

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Selective constraint, background selection, and mutation accumulation variability within and between human populations

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A multiplex microsatellite tool for conservation genetics of the endemic limpet Patella candei in the Macaronesian archipelagos

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A case for genetic parentage assignment in captive group housing

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MHC-associated mate choice under competitive conditions in captive versus wild Tasmanian devils

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A suite of potentially amplifiable microsatellite loci for ten reptiles of conservation concern from Africa and Asia

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Development and characterization of 17 polymorphic microsatellite markers for the reef manta ray (Mobula alfredi)

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Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil)

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Population genomics for wildlife conservation and management

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How genomics can help biodiversity conservation

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The era of reference genomes in conservation genomics

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Opportunities and challenges of macrogenetic studies

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The phenotypic costs of captivity

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The contribution of historical processes to contemporary extinction risk in placental mammals

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Threatened Species Initiative: Empowering conservation action using genomic resources

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Balancing Openness with Indigenous Data Sovereignty — An Opportunity to Leave No One behind in the Journey to Sequence All of Life

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Reference genomes for conservation

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Complex problems need detailed solutions: Harnessing multiple data types to inform genetic management in the wild

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Translating genomic advances into biodiversity conservation

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The Challenges of Reconstructing Tropical Biodiversity With Sedimentary Ancient DNA: A 2200-Year-Long Metagenomic Record From Bwindi Impenetrable Forest, Uganda

Dommain, R., Andama, M., McDonough, M. M., Prado, N. A., Goldhammer, T., Potts, R., Maldonado, J. E., Nkurunungi, J. B., & Campana, M. G. (2020) · Frontiers in Ecology and Evolution · doi:10.3389/fevo.2020.00218 · Cited by 57 · see citing works

Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories

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The relevance of pedigrees in the conservation genomics era

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Genomic data is missing for many highly invasive species, restricting our preparedness for escalating incursion rates

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Simulation-Based Evaluation of Methods, Data Types, and Temporal Sampling Schemes for Detecting Recent Population Declines

Reid, B. N., & Pinsky, M. L. (2022) · Integrative and Comparative Biology · doi:10.1093/icb/icac144 · Cited by 34 · see citing works

Too much of a good thing? Finding the most informative genetic data set to answer conservation questions

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Earth Biogenome Project: present status and future plans

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Perspectives on studying molecular adaptations of amphibians in the genomic era

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Reference transcriptomes and comparative analyses of six species in the threatened rosewood genus Dalbergia

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Contemporary and historical selection in Tasmanian devils (Sarcophilus harrisii) support novel, polygenic response to transmissible cancer

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A reference genome for the critically endangered woylie, Bettongia penicillata ogilbyi

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Koala Genome Survey: An Open Data Resource to Improve Conservation Planning

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Whole genome sequences from non-invasively collected caribou faecal samples

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Genomes of two Extinct‐in‐the‐Wild reptiles from Christmas Island reveal distinct evolutionary histories and conservation insights

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Fifty Years of Research on European Mink Mustela lutreola L., 1761 Genetics: Where Are We Now in Studies on One of the Most Endangered Mammals?

Skorupski, J. (2020) · Genes · doi:10.3390/genes11111332 · Cited by 20 · see citing works

Scalable Nucleic Acid Storage and Retrieval Using Barcoded Microcapsules

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Advancing Genetic Methods in the Study of Parrot Biology and Conservation

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Seascape Genomics and Phylogeography of the Sailfish (Istiophorus platypterus)

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Genomic Approaches for Conservation Management in Australia under Climate Change

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Novel Chimeric Vaccine Candidate Development against Leptotrichia buccalis

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Chromosome-Length Assembly of the Baikal Seal (Pusa sibirica) Genome Reveals a Historically Large Population Prior to Isolation in Lake Baikal

Yakupova, A. R., Tomarovsky, A. A., Totikov, A., Beklemisheva, V. R., Logacheva, M. D., Perelman, P. L., Komissarov, A. S., Dobrynin, P. V., Krasheninnikova, K., Tamazian, G., et al. (2023) · Genes · doi:10.3390/genes14030619 · Cited by 17 · see citing works

Challenges on the Development of Biodiversity Biobanks: The Living Archives of Biodiversity

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Rapture‐ready darters: Choice of reference genome and genotyping method (whole‐genome or sequence capture) influence population genomic inference in Etheostoma

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The impact of sequencing depth and relatedness of the reference genome in population genomic studies: A case study with two caddisfly species (Trichoptera, Rhyacophilidae, Himalopsyche)

Deng, X., Frandsen, P. B., Dikow, R. B., Favre, A., Shah, D. N., Shah, R. D. T., Schneider, J. V., Heckenhauer, J., & Pauls, S. U. (2022) · Ecology and Evolution · doi:10.1002/ece3.9583 · Cited by 13 · see citing works

Enhancing inbreeding estimation and global conservation insights through chromosome-level assemblies of the Chinese and Malayan pangolin

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Temporal Loss of Genome‐Wide and Immunogenetic Diversity in a Near‐Extinct Parrot

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Effects of non-random juvenile mortality on small, inbred populations

Stojanović, D., Neeman, T. M., Lacy, R. C., Farquharson, K. A., Hogg, C. J., & Heinsohn, R. (2022) · Biological Conservation · doi:10.1016/j.biocon.2022.109504 · Cited by 14 · see citing works

Whole genome analysis of clouded leopard species reveals an ancient divergence and distinct demographic histories

Bursell, M. G., Dikow, R. B., Figueiró, H. V., Dudchenko, O., Flanagan, J. P., Aiden, E. L., Goossens, B., Nathan, S. K. S. S., Johnson, W. E., Koepfli, K., et al. (2022) · iScience · doi:10.1016/j.isci.2022.105647 · Cited by 13 · see citing works

Wildlife Population Genomics: Applications and Approaches

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First whole-genome sequence and assembly of the Ecuadorian brown-headed spider monkey ( Ateles fusciceps fusciceps ), a critically endangered species, using Oxford Nanopore Technologies

Pozo, G., Albuja‐Quintana, M., Larreátegui, L., Gutiérrez, B., Fuentes, N., Alfonso-Cortes, F., & Torres, M. D. L. (2024) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkae014 · Cited by 11 · see citing works

Where the “ruber” Meets the Road: Using the Genome of the Red Diamond Rattlesnake to Unravel the Evolutionary Processes Driving Venom Evolution

Hirst, S. R., Rautsaw, R. M., VanHorn, C. M., Beer, M. A., McDonald, P. J., Rosales-García, R. A., Rodríguez-López, B., Rincón, A. R., Franz-Chávez, H., Vásquez-Cruz, V., et al. (2024) · Genome Biology and Evolution · doi:10.1093/gbe/evae198 · Cited by 11 · see citing works

Whole genome sequencing reveals high differentiation, low levels of genetic diversity and short runs of homozygosity among Swedish wels catfish

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Recapitulating whole genome based population genetic structure for Indian wild tigers through an ancestry informative marker panel

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Molecular Phylogeny and Evolution of Amazon Parrots in the Greater Antilles

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Population genomics reveals moderate genetic differentiation between populations of endangered Forest Musk Deer located in Shaanxi and Sichuan

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Integrating genomics and conservation to safeguard plant diversity

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Influence of molecular marker type on estimating effective population size and other genetic parameters in a critically endangered parrot

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The future is here: an easy‐to‐use toolkit for integrating genetics into conservation management

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Defining species‐specific seed sourcing strategies for restoration: an example of how to use genetic data to inform seed collections for multiple co‐occurring species

Fahey, P. S., Bragg, J. G., Dimon, R. J., McMaster, E. S., O'Hare, J. A., Hogbin, P. M., van der Merwe, M. M., & Rossetto, M. (2025) · Restoration Ecology · doi:10.1111/rec.70063 · Cited by 10 · see citing works

Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle

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kmerDB: A database encompassing the set of genomic and proteomic sequence information for each species

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Pathways to Recovery: Genomics and Resistance Assays for Tree Species Devastated by the Myrtle Rust Pathogen

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Assembly of female and male hihi genomes (stitchbird; Notiomystis cincta) enables characterization of the W chromosome and resources for conservation genomics

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Evaluating restriction enzyme selection for reduced representation sequencing in conservation genomics

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Harnessing genomic technologies for one health solutions in the tropics

Calcino, A., Cooke, I., Cowman, P., Higgie, M., Massault, C., Schmitz, U., Whittaker, M. A., & Field, M. A. (2024) · Globalization and Health · doi:10.1186/s12992-024-01083-3 · Cited by 9 · see citing works

Conservation genomics of a critically endangered brown seaweed

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Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes)

Kliver, S. F., Houck, M. L., Perelman, P. L., Totikov, A., Tomarovsky, A. A., Dudchenko, O., Omer, A. D., Colaric, Z., Weisz, D., Aiden, E. L., et al. (2023) · Journal of Heredity · doi:10.1093/jhered/esad035 · Cited by 9 · see citing works

The role of genomics in the future of ESA decision-makingPreprint

Forester, B. R., & Lama, T. M. (2022) · doi:10.32942/osf.io/b6rf4 · Cited by 9 · see citing works

Conservation genomics within government led conservation planning: an Australian case study exploring cost and benefit for threatened flora

Doyle, C., Cascini, M., Yap, J. S., Matthews, H., Hogbin, P. M., Wilson, T. C., Mahon, E., Brown, D., Mulcahy, A., Brown, R., et al. (2025) · Annals of Botany · doi:10.1093/aob/mcae222 · Cited by 8 · see citing works

A genome assembly of the Yuma myotis bat, Myotis yumanensis

Curti, J. N., Fraser, D. L., Escalona, M., Fairbairn, C. W., Sacco, S., Sahasrabudhe, R. M., Nguyen, O., Seligmann, W., Sudmant, P. H., Toffelmier, E. M., et al. (2023) · Journal of Heredity · doi:10.1093/jhered/esad053 · Cited by 8 · see citing works

Genome Assembly of the Dyeing Poison Frog Provides Insights into the Dynamics of Transposable Element and Genome-Size Evolution

Dittrich, C., Hoelzl, F., Smith, S., Fouilloux, C. A., Parker, D. J., O’Connell, L. A., Knowles, L. S., HUGHES, M. A., Fewings, A., Morgan, R., et al. (2024) · Genome Biology and Evolution · doi:10.1093/gbe/evae109 · Cited by 8 · see citing works

Genome of the endangered eastern quoll (Dasyurus viverrinus) reveals signatures of historical decline and pelage color evolution

Hartley, G. A., Frankenberg, S., Robinson, N. M., MacDonald, A. J., Hamede, R., Burridge, C. P., Jones, M. E., Faulkner, T., Shute, H., Rose, K. A., et al. (2024) · Communications Biology · doi:10.1038/s42003-024-06251-0 · Cited by 8 · see citing works

Prospects for Molecular Breeding in Cotton,Gossypiumspp

Katageri, I. S., Gowda, S. A., Prashanth, B. N., Biradar, M., Rajeev, M. S., & Patil, R. S. (2020) · IntechOpen eBooks · doi:10.5772/intechopen.94613 · Cited by 8 · see citing works

Exploiting genomic synteny in Felidae: cross-species genome alignments and SNV discovery can aid conservation management

Samaha, G., Wade, C. M., Mazrier, H., Grueber, C. E., & Haase, B. (2021) · BMC Genomics · doi:10.1186/s12864-021-07899-2 · Cited by 9 · see citing works

Fitness consequences of targeted gene flow to counter impacts of drying climates on terrestrial-breeding frogs

Rudin-Bitterli, T. S., Evans, J. P., & Mitchell, N. J. (2021) · Communications Biology · doi:10.1038/s42003-021-02695-w · Cited by 8 · see citing works

Genetic Diversity and Population Structure of Doum Palm (Hyphaene compressa) Using Genotyping by Sequencing

Omire, A., Neondo, J. O., Budambula, N. L. M., Wangai, L. N., Ogada, S., & Mweu, C. M. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.762202 · Cited by 7 · see citing works

Genetic diversity in ex situ populations of the endangered Leontopithecus chrysomelas and implications for its conservation

Aliaga‐Samanez, G. G., Javarotti, N. B., Orecife, G., Chávez‐Congrains, K., Pissinatti, A., Monticelli, C., Marques, M. C., Galbusera, P., Galetti, P. M., & de Freitas, P. D. (2023) · PLoS ONE · doi:10.1371/journal.pone.0288097 · Cited by 7 · see citing works

De novowhole-genome assembly and resequencing resources for the roan (Hippotragus equinus), an iconic African antelope

Gonçalves, M., SIEGISMUND, H. R., van Vuuren, B. J., Koepfli, K., Ferrand, N., & Godinho, R. (2021) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkab002 · Cited by 7 · see citing works

Chromosomal-level reference genome assembly of the North American wolverine (<i>Gulo gulo luscus</i>): a resource for conservation genomics

Lok, S., Lau, T. N. H., Trost, B., Tong, A. H. Y., Wintle, R. F., Engstrom, M. D., Stacy, E., Waits, L. P., Scrafford, M., & Scherer, S. W. (2022) · G3 Genes|Genomes|Genetics · doi:10.1093/g3journal/jkac138 · Cited by 6 · see citing works

A Guide for Developing Demo‐Genetic Models to Simulate Genetic Rescue

Beaman, J., Gates, K., Saltré, F., Hogg, C., Belov, K., Ashman, K., da Silva, K. D., Beheregaray, L., & Bradshaw, C. J. A. (2025) · Evolutionary Applications · doi:10.1111/eva.70092 · Cited by 7 · see citing works

A chromosome-scale high-contiguity genome assembly of the cheetah ( Acinonyx jubatus )

Winter, S., Meißner, R., Greve, C., Hamadou, A. B., Hořín, P., Prost, S., & Burger, P. A. (2023) · Journal of Heredity · doi:10.1093/jhered/esad015 · Cited by 5 · see citing works

Prioritizing Endangered Species in Genome Sequencing: Conservation Genomics in Action with the First Platinum-Standard Reference-Quality Genome of the Critically Endangered European Mink Mustela lutreola L., 1761

Skorupski, J., Brandes, F., Seebass, C., Festl, W., Śmietana, P., Balacco, J., Jain, N., Tilley, T., Abueg, L. A. L., Wood, J. M. D., et al. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms241914816 · Cited by 6 · see citing works

Comprehensive genome assembly reveals genetic diversity and carcass consumption insights in critically endangered Asian king vultures

Buthasane, W., Shotelersuk, V., Chetruengchai, W., Srichomthong, C., Assawapitaksakul, A., Tangphatsornruang, S., Pootakham, W., Sonthirod, C., Tongsima, S., Wangkumhang, P., et al. (2024) · Scientific Reports · doi:10.1038/s41598-024-59990-9 · Cited by 6 · see citing works

A genomic framework to assist conservation breeding and translocation success: A case study of a critically endangered turtle

Nelson, H. V., Farquharson, K. A., Georges, A., McLennan, E. A., DeGabriel, J. L., Giese, M., Ormond, C., McFadden, M., Skidmore, A., Prangell, J., et al. (2024) · Conservation Science and Practice · doi:10.1111/csp2.13204 · Cited by 6 · see citing works

Facilitating high throughput collections-based genomics: a comparison of DNA extraction and library building methods

Marsh, W. A., Hall, A. C., Barnes, I., & Price, B. W. (2025) · Scientific Reports · doi:10.1038/s41598-025-88443-0 · Cited by 6 · see citing works

The role of systematics for understanding ecosystem functions: Proceedings of the Zoologica Scripta Symposium, Oslo, Norway, 25 August 2022

Bachmann, L., Beermann, J., Brey, T., de Boer, H., Dannheim, J., Edvardsen, B., Ericson, P. G. P., Holston, K. C., Johansson, V. A., Kloss, P., et al. (2023) · Zoologica Scripta · doi:10.1111/zsc.12593 · Cited by 6 · see citing works

Opportunities for modern genetic technologies to maintain and enhance Aotearoa New Zealand’s bioheritage

Inwood, S. N., McLaughlin, G. M., Buckley, T. R., Cox, M. P., Handley, K. M., Steeves, T. E., Strabala, T. J., McDougal, R. L., & Dearden, P. K. (2020) · New Zealand Journal of Ecology · doi:10.20417/nzjecol.44.22 · Cited by 6 · see citing works

High quality genomes produced from single MinION flow cells clarify polyploid and demographic histories of critically endangered Fraxinus (ash) species

Fleck, S. J., Tomlin, C., Coelho, F. A. D. S., Richter, M., Danielson, E. S., Backenstose, N. J. C., Krabbenhoft, T. J., Lindqvist, C., & Albert, V. A. (2024) · Communications Biology · doi:10.1038/s42003-023-05748-4 · Cited by 6 · see citing works

Between hype and hope: De-extinction is a tool, not a panacea for the biodiversity crisis

Carvalho, R. B. (2025) · Biological Conservation · doi:10.1016/j.biocon.2025.111307 · Cited by 5 · see citing works

Large future genetic diversity losses are predicted even with habitat protectionPreprint

Mualim, K. S., Spence, J. P., Weiß, C. L., Selmoni, O. M., Lin, M., & Expósito‐Alonso, M. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.10.21.619096 · Cited by 5 · see citing works

Chromosomal-level reference genome assembly of muskox (Ovibos moschatus) from Banks Island in the Canadian Arctic, a resource for conservation genomics

Lok, S., Lau, T. N. H., Trost, B., Tong, A. H. Y., Paton, T., Wintle, R. F., Engstrom, M. D., Gunn, A., & Scherer, S. W. (2024) · Scientific Reports · doi:10.1038/s41598-024-67270-9 · Cited by 4 · see citing works

Chromosome-scale Genomes Show Rapid Diversification and Ancient Gene Flow Among Bear Species

Wooldridge, T. B., Escalona, M., Perry, B. W., Enstrom, A., Salih, D., Seligmann, W., Sacco, S., Moon, K. L., Sahasrabudhe, R. M., Chumchim, N., et al. (2025) · Genome Biology and Evolution · doi:10.1093/gbe/evaf188 · Cited by 4 · see citing works

Genomics for conservation: a case study of behavioral genes in the Tasmanian devil

Silver, L. W., Hogg, C. J., Wright, B. R., & Grueber, C. E. (2021) · Conservation Genetics · doi:10.1007/s10592-021-01354-1 · Cited by 4 · see citing works

De Novo Genome Assembly for an Endangered Lemur Using Portable Nanopore Sequencing in Rural Madagascar

Hauff, L., Rasoanaivo, N. E., Razafindrakoto, A., Ravelonjanahary, H. N., Wright, P. C., Rakotoarivony, R., & Bergey, C. M. (2025) · Ecology and Evolution · doi:10.1002/ece3.70734 · Cited by 5 · see citing works

Genome insights give cause for optimism in the ongoing battle to save the vaquita

Whibley, A. C. (2021) · Molecular Ecology Resources · doi:10.1111/1755-0998.13345 · Cited by 4 · see citing works

Whole genome sequences from non-invasively collected samplesPreprint

Taylor, R. S., Manseau, M., Redquest, B., & Wilson, P. J. (2020) · doi:10.22541/au.158809437.78730399 · Cited by 4 · see citing works

Haplotype-resolved genome and population genomics of the threatened garden dormouse in EuropePreprint

Byerly, P. A., von Thaden, A., Leushkin, E. V., Hilgers, L., Liu, S., Winter, S., Schell, T., Gerheim, C., Hamadou, A. B., Greve, C., et al. (2024) · Genome Research · doi:10.1101/gr.279066.124 · Cited by 5 · see citing works

Four new genome sequences of the Pallas’s cat (Otocolobus manul): an insight into the patterns of within-species variability

Bubenikova, J., Plášil, M., Burger, P. A., & Hořín, P. (2024) · Frontiers in Genetics · doi:10.3389/fgene.2024.1463774 · Cited by 3 · see citing works

Synteny Enabled Upgrade of the Galapagos Giant Tortoise Genome Improves Inferences of Runs of Homozygosity

Jensen, E. L., Marchisio, C., Ochoa, A., Gray, R., Parra, V., Miller, J. M., Çilingir, F. G., & Caccone, A. (2025) · Ecology and Evolution · doi:10.1002/ece3.71358 · Cited by 3 · see citing works

The reference genome of the Asian Elephant (Elephas maximus): a foundation for conservation and genomic research

Panis, D. N. D., Arantes, L. S., Brown, T., Somenzi, E., Wibbelt, G., Ballaco, J., Mountcastle, J., Brajuka, N., Joardar, V., Fedrigo, O. D., et al. (2026) · BMC Genomics · doi:10.1186/s12864-026-12821-9 · Cited by 3 · see citing works

Seven reasons why threatened species managers must consider genetic health

Bail, N., Hoskin, C. J., Hines, H. B., Frankham, R., & Higgie, M. (2026) · BioScience · doi:10.1093/biosci/biag046 · Cited by 3 · see citing works

Forest genomics in the Caucasus through the lens of its dominant tree species – Fagus orientalis

Capblancq, T., Sękiewicz, K., & Dering, M. (2024) · Molecular Ecology · doi:10.1111/mec.17475 · Cited by 3 · see citing works

Chromosome-Level Genome Assembly of the Australian Rainforest Tree Rhodamnia argentea (Malletwood)

Chen, S. H., Jones, A., Lu‐Irving, P., Yap, J. S., van der Merwe, M. M., Bragg, J. G., & Edwards, R. J. (2024) · Genome Biology and Evolution · doi:10.1093/gbe/evae238 · Cited by 3 · see citing works

Molecular evolutionary model based on phylogenetic and mutation analysis of SARS-CoV-2 spike protein sequences from Asian countries: A phylogenomic approach

Said, K. B., Alsolami, A. A., Alshammari, F. D., Alshammari, K. F., Alazmi, M., Bhardwaj, T., Najm, M. Z., Singh, R. K., & Kausar, M. A. (2023) · Informatics in Medicine Unlocked · doi:10.1016/j.imu.2023.101221 · Cited by 3 · see citing works

Whole genome assessment of a declining game bird reveals cryptic genetic structure and insights for population management

Luna, L. W., Williams, L. M., Duren, K., Tyl, R. M., Toews, D. P. L., & Avery, J. D. (2023) · Molecular Ecology · doi:10.1111/mec.17129 · Cited by 3 · see citing works

A rapid approach for sex assignment by RAD-seq using a reference genome

Peralta, D. M., Túnez, J. I., Rodríguez-Cruz, U. E., & Ceballos, S. G. (2024) · PLoS ONE · doi:10.1371/journal.pone.0297987 · Cited by 3 · see citing works

Unravelling phylogenetic relationships within the genus Lispe (Diptera: Muscidae) through genome-assisted and de novo analyses of RAD-seq data

Walczak, K., Piwczyński, M., Pape, T., Johnston, N. P., Wallman, J. F., Szpila, K., & Grzywacz, A. (2025) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2025.108291 · Cited by 3 · see citing works

Draft genome of the endemic alpine ground beetle Carabus ( Platycarabus ) depressus (Coleoptera: Carabidae) from long-read sequencing of a frozen archived specimen

Gauthier, J., Cardenas, C. R., Nari, M., Gillett, C. P. D. T., & Toussaint, E. F. A. (2025) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkaf027 · Cited by 2 · see citing works

Chromosome-level genome assembly and Oligo-FISH confirmation of chromosome models for the Tasmanian snow skink Carinascincus ocellatus (Scincidae, Eugongylinae)

Saunders, P. A., Sassi, F. D. M. C., Cioffi, M. D. B., Simakov, O., Burridge, C. P., Ezaz, T., & Wapstra, E. (2025) · BMC Biology · doi:10.1186/s12915-025-02402-9 · Cited by 2 · see citing works

Threatened Species Initiative: Empowering conservation action using genomic resources

Hogg, C. J., Ottewell, K. M., Latch, P., Rossetto, M., Biggs, J., Gilbert, A. T. B., Richmond, S., & Belov, K. (2022) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2115643118 · Cited by 96 · see citing works

Putting genomics to work in threatened species management

Nelson, H. V. (2024) · The Sydney eScholarship Repository (The University of Sydney)

Revealing the origin and evolutionary trajectory of DFTD using genetics and genomics

(91468), B. W., Újvári, B., Deakin, J. E., (13498204), M. E., & Belov, K. (2019) · Figshare

Devil Facial Tumour Disease (DFTD): Using Genetics and Genomics to Investigate Infectious Disease in an Endangered Marsupial

Bender, H. S. (2010) · Springer eBooks · doi:10.1007/978-90-481-9023-2_23 · Cited by 2 · see citing works

Conserving Australia's iconic marsupials; one genome at a time

Brandies, P. A. (2023) · The Sydney eScholarship Repository (The University of Sydney) · doi:10.25910/kzk6-gv31 · Cited by 1 · see citing works