Post translational modifications in adenovirus type 2

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

Rappsilber, J., Mann, M., & Ishihama, Y. (2007) · Nature Protocols · doi:10.1038/nprot.2007.261 · Cited by 4,641 · see citing works

Biological Tyrosine Nitration: A Pathophysiological Function of Nitric Oxide and Reactive Oxygen Species

Ischiropoulos, H. (1998) · Archives of Biochemistry and Biophysics · doi:10.1006/abbi.1998.0755 · Cited by 1,024 · see citing works

Update on adenovirus and its vectors

Russell, W. C. (2000) · Journal of General Virology · doi:10.1099/0022-1317-81-11-2573 · Cited by 592 · see citing works

Tyrosine nitration: Localisation, quantification, consequences for protein function and signal transduction

Greenacre, S., & Ischiropoulos, H. (2001) · Free Radical Research · doi:10.1080/10715760100300471 · Cited by 500 · see citing works

Mass spectrometry–based proteomics in cell biology

Walther, T. C., & Mann, M. (2010) · The Journal of Cell Biology · doi:10.1083/jcb.201004052 · Cited by 411 · see citing works

Atomic Structure of Human Adenovirus by Cryo-EM Reveals Interactions Among Protein Networks

Liu, H., Jin, L., Koh, S. B. S., Atanasov, I. C., Schein, S., Wu, L., & Zhou, Z. H. (2010) · Science · doi:10.1126/science.1187433 · Cited by 384 · see citing works

Difference imaging of adenovirus: bridging the resolution gap between X‐ray crystallography and electron microscopy.

Stewart, P. L., Fuller, S. D., & Burnett, R. M. (1993) · The EMBO Journal · doi:10.1002/j.1460-2075.1993.tb05919.x · Cited by 382 · see citing works

Protein Tyrosine Nitration: Selectivity, Physicochemical and Biological Consequences, Denitration, and Proteomics Methods for the Identification of Tyrosine-Nitrated Proteins

Abello, N., Kerstjens, H. A. M., Postma, D. S., & Bischoff, R. (2009) · Journal of Proteome Research · doi:10.1021/pr900039c · Cited by 359 · see citing works

Molecular composition of the adenovirus type 2 virion

van Oostrum, J., & Burnett, R. M. (1985) · Journal of Virology · doi:10.1128/jvi.56.2.439-448.1985 · Cited by 297 · see citing works

Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry

Nielsen, M. L., Vermeulen, M., Bonaldi, T., Cox, J., Moroder, L., & Mann, M. (2008) · Nature Methods · doi:10.1038/nmeth0608-459 · Cited by 287 · see citing works

Structural and Phylogenetic Analysis of Adenovirus Hexons by Use of High-Resolution X-Ray Crystallographic, Molecular Modeling, and Sequence-Based Methods

Rux, J. J., Kuser, P. R., & Burnett, R. M. (2003) · Journal of Virology · doi:10.1128/jvi.77.17.9553-9566.2003 · Cited by 238 · see citing works

Crystal Structure of Human Adenovirus at 3.5 Å Resolution

Reddy, V. S., Natchiar, S. K., Stewart, P. L., & Nemerow, G. R. (2010) · Science · doi:10.1126/science.1187292 · Cited by 236 · see citing works

The Structure of the Human Adenovirus 2 Penton

Zubieta, C., Schoehn, G., Chroboczek, J., & Cusack, S. (2005) · Molecular Cell · doi:10.1016/j.molcel.2004.11.041 · Cited by 235 · see citing works

Tyrosine sulfation: an increasingly recognised post-translational modification of secreted proteins

Stone, M. J., Chuang, S., Hou, X., Shoham, M., & Zhu, J. Z. (2009) · New Biotechnology · doi:10.1016/j.nbt.2009.03.011 · Cited by 171 · see citing works

Protein carbamylation: In vivo modification or in vitro artefact?

Kollipara, L., & Zahedi, R. P. (2013) · PROTEOMICS · doi:10.1002/pmic.201200452 · Cited by 159 · see citing works

Evaluation of Gas-Phase Rearrangement and Competing Fragmentation Reactions on Protein Phosphorylation Site Assignment Using Collision Induced Dissociation-MS/MS and MS3

Palumbo, A. M., & Reid, G. E. (2008) · Analytical Chemistry · doi:10.1021/ac801768s · Cited by 157 · see citing works

Mapping the Phosphoproteome of Influenza A and B Viruses by Mass Spectrometry

Hutchinson, E. C., Denham, E. M., Thomas, B., Trudgian, D. C., Hester, S. S., Ridlova, G., York, A., Turrell, L., & Fodor, E. (2012) · PLoS Pathogens · doi:10.1371/journal.ppat.1002993 · Cited by 151 · see citing works

Tandem Mass Spectrometry - Applications and Principles

PRASAIN, J. K. (2012) · InTech eBooks · doi:10.5772/1327 · Cited by 137 · see citing works

Adenovirus Methods and Protocols

(2007) · Methods in molecular medicine · doi:10.1007/978-1-59745-277-9 · Cited by 114 · see citing works

Polypeptide Phosphorylation in Adenovirus-Infected Cells

Russell, W. C., & Blair, G. E. (1977) · Journal of General Virology · doi:10.1099/0022-1317-34-1-19 · Cited by 100 · see citing works

Phosphoproteins of adenovirus 2

Axelrod, N. (1978) · Virology · doi:10.1016/0042-6822(78)90141-1 · Cited by 93 · see citing works

Complications in the Assignment of 14 and 28 Da Mass Shift Detected by Mass Spectrometry as in Vivo Methylation from Endogenous Proteins

Jung, S. Y., Li, Y., Wang, Y., Chen, Y., Zhao, Y., & Qin, J. (2008) · Analytical Chemistry · doi:10.1021/ac7021025 · Cited by 74 · see citing works

Structural proteins of adenoviruses

Pettersson, U. (1971) · Virology · doi:10.1016/0042-6822(71)90230-3 · Cited by 59 · see citing works

Structure of the Dodecahedral Penton Particle from Human Adenovirus Type 3

Fuschiotti, P., Schoehn, G., Fender, P., Fabry, C. M. S., Hewat, E. A., Chroboczek, J., Ruigrok, R. W. H., & Conway, J. F. (2005) · Journal of Molecular Biology · doi:10.1016/j.jmb.2005.11.048 · Cited by 50 · see citing works

ProMoST: A Tool for Calculating the pI and Molecular Mass of Phosphorylated and Modified Proteins on Two-Dimensional Gels

Halligan, B. D. (2009) · Methods in molecular biology · doi:10.1007/978-1-60327-834-8_21 · Cited by 40 · see citing works

Identification of a protein kinase activity associated with human adenoviruses

Blair, G. E., & Russell, W. C. (1978) · Virology · doi:10.1016/0042-6822(78)90016-8 · Cited by 33 · see citing works

Collection and Motif-Based Prediction of Phosphorylation Sites in Human Viruses

Schwartz, D. A., & Church, G. M. (2010) · Science Signaling · doi:10.1126/scisignal.2001099 · Cited by 32 · see citing works

Cleavage Efficiency by Adenovirus Protease Is Site-dependent

Diouri, M., Keyvani, H., Geoghegan, K. F., & WEBER, J. M. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.51.32511 · Cited by 29 · see citing works

A protein kinase associated with adenovirus type 2

Akusjärvi, G., Philipson, L., & Pettersson, U. (1978) · Virology · doi:10.1016/0042-6822(78)90133-2 · Cited by 24 · see citing works

The phosphoproteome of the adenovirus type 2 virion

Lind, S. B., Artemenko, K. A., Elfineh, L., Zhao, Y., Bergquist, J., & Pettersson, U. (2012) · Virology · doi:10.1016/j.virol.2012.08.012 · Cited by 17 · see citing works

The adenovirus type 5 capsid protein IIIa is phosphorylated during an early stage of infection of HeLa cells

Tsuzuki, J., & Luftig, R. B. (1983) · Virology · doi:10.1016/0042-6822(83)90196-4 · Cited by 13 · see citing works

Proteome Analysis of Adenovirus Using Mass Spectrometry

Lind, S. B., Artemenko, K. A., & Pettersson, U. (2013) · Methods in molecular biology · doi:10.1007/978-1-62703-679-5_2 · Cited by 5 · see citing works

Proteomic Strategies for Comprehensive Identification of Post-Translational Modifications of Cellular Proteins Including Low Abundant and Novel Modifications

Jeong, J., Lee, J., & Lee, K. (2012) · InTech eBooks · doi:10.5772/31763 · Cited by 3 · see citing works

Post‐translational modifications in capsid proteins of recombinant adeno‐associated virus ( AAV ) 1‐rh10 serotypes

Mary, B., Maurya, S., Arumugam, S., Kumar, V. S., & Jayandharan, G. R. (2019) · FEBS Journal · doi:10.1111/febs.15013 · Cited by 102 · see citing works

Time course analysis of mechanical ventilation‐induced diaphragm contractile muscle dysfunction in the rat

Corpeño, R., Dworkin, B. R., Cacciani, N., Salah, H. A., Bergman, H. ‐., Ravara, B., Vitadello, M., Gorza, L., Gustafson, A., Hedström, Y., et al. (2014) · The Journal of Physiology · doi:10.1113/jphysiol.2014.277962 · Cited by 68 · see citing works

The Impact of Mass Spectrometry–Based Proteomics on Fundamental Discoveries in Virology

Greco, T. M., Diner, B. A., & Cristea, I. M. (2014) · Annual Review of Virology · doi:10.1146/annurev-virology-031413-085527 · Cited by 67 · see citing works

Orchestration of protein acetylation as a toggle for cellular defense and virus replication

Murray‐Nerger, L. A., Sheng, X., & Cristea, I. M. (2018) · Nature Communications · doi:10.1038/s41467-018-07179-w · Cited by 60 · see citing works

Regulation of Human Adenovirus Alternative RNA Splicing by the Adenoviral L4-33K and L4-22K Proteins

Biasiotto, R., & Akusjärvi, G. (2015) · International Journal of Molecular Sciences · doi:10.3390/ijms16022893 · Cited by 39 · see citing works

Chaperone co‐inducer BGP‐15 mitigates early contractile dysfunction of the soleus muscle in a rat ICU model

Cacciani, N., Salah, H. A., Li, M., Akkad, H., Backéus, A., Hedström, Y., Jena, B. P., Bergquist, J., & Larsson, L. (2019) · Acta Physiologica · doi:10.1111/apha.13425 · Cited by 31 · see citing works

A viral ubiquitination switch attenuates innate immunity and triggers nuclear import of virion DNA and infection

Bauer, M., Gómez-González, A., Suomalainen, M., Schilling, N., Hemmi, S., & Greber, U. F. (2021) · Science Advances · doi:10.1126/sciadv.abl7150 · Cited by 29 · see citing works

Phosphorylation regulates viral biomolecular condensates to promote infectious progeny production

Grams, N., Charman, M., Halko, E., Lauman, R., Garcia, B. A., & Weitzman, M. D. (2024) · The EMBO Journal · doi:10.1038/s44318-023-00021-0 · Cited by 12 · see citing works

Phosphorylation Time‐Course Study of the Response during Adenovirus Type 2 Infection

Valdés, A., Zhao, H., Pettersson, U., & Lind, S. B. (2020) · PROTEOMICS · doi:10.1002/pmic.201900327 · Cited by 10 · see citing works

Temporal characterization of the non-structural Adenovirus type 2 proteome and phosphoproteome using high-resolving mass spectrometry

Källsten, M., Gromova, A., Zhao, H., Valdés, A., Konzer, A., Pettersson, U., & Lind, S. B. (2017) · Virology · doi:10.1016/j.virol.2017.08.032 · Cited by 10 · see citing works

Comprehensive computational analysis reveals YXXΦ[I/L/M/F/V] motif and YXXΦ-like tetrapeptides across HFRS causing Hantaviruses and their association with viral pathogenesis and host immune regulation

Noor, F., Ashfaq, U. A., Asif, M., Adeel, M. M., Alshammari, A., & Alharbi, M. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.1031608 · Cited by 9 · see citing works

Proteomic Analysis of Adenovirus 5 by UHPLC-MS/MS: Development of a Robust and Reproducible Sample Preparation Workflow

Zarei, M., Jonveaux, J., Wang, P., Haller, F. M., Gu, B., Koulov, A. V., & Jahn, M. (2022) · ACS Omega · doi:10.1021/acsomega.2c05325 · Cited by 7 · see citing works

Proteomic analysis of A-549 cells infected with human adenovirus 40 by LC-MS

Guissoni, A. C. P., Soares, C. M. A., Badr, K. R., Ficcadori, F. S., Parente, A. F. A., Parente, J. A., Baeza, L. C., Souza, M. B. L. D., & Cardoso, D. D. D. D. P. (2018) · Virus Genes · doi:10.1007/s11262-018-1554-3 · Cited by 7 · see citing works

On-target titanium dioxide-based enrichment for characterization of phosphorylations in the Adenovirus pIIIa protein

Eriksson, A. I. K., Bartsch, M., Bergquist, J., Edwards, K., Lind, S. B., & Hernández, V. A. (2013) · Journal of Chromatography A · doi:10.1016/j.chroma.2013.08.096 · Cited by 7 · see citing works

Adenovirus with DNA Packaging Gene Mutations Increased Virus Release

Wechman, S. L., Rao, X., McMasters, K. M., & Zhou, H. (2016) · Viruses · doi:10.3390/v8120333 · Cited by 6 · see citing works

Targeting the YXXΦ Motifs of the SARS Coronaviruses 1 and 2 ORF3a Peptides by In Silico Analysis to Predict Novel Virus—Host Interactions

Kakkanas, A., Karamichali, E., Koufogeorgou, E. I., Kotsakis, S. D., Georgopoulou, U., & Foka, P. (2022) · Biomolecules · doi:10.3390/biom12081052 · Cited by 5 · see citing works

A comparative study of phosphopeptide-selective techniques for a sub-proteome of a complex biological sample

Källsten, M., Bergquist, J., Zhao, H., Konzer, A., & Lind, S. B. (2016) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-016-9333-2 · Cited by 4 · see citing works

Encounters with adenovirus

Pettersson, U. (2019) · Upsala Journal of Medical Sciences · doi:10.1080/03009734.2019.1613698 · Cited by 3 · see citing works

Proteomic Technology

Veenstra, T. D. (2026) · Advances in experimental medicine and biology · doi:10.1007/978-3-032-22340-1_1 · Cited by 2 · see citing works

The E3 ubiquitin ligase Mind bomb 1 enhances nuclear import of viral DNA by inactivating a virion linchpin protein that suppresses exposure of virion pathogen-associated molecular patternsPreprint

Bauer, M., Gómez-González, A., Suomalainen, M., Hemmi, S., & Greber, U. F. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.08.29.242826 · Cited by 2 · see citing works

Cellular SUMO-specific proteases regulate HAdV-C5 E1B-55K SUMOylation and virus-induced cell transformation

Ip, W.-H., Fiedler, M., Gornott, B., Morische, M., Bertzbach, L. D., & Dobner, T. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2024.1484241 · Cited by 1 · see citing works

Particle size distribution resolution limit of AAV high-speed sedimentation velocity protocol relative to low-speed sedimentation velocity protocol, mass photometry, and charge-detection mass spectrometry

Kokona, B., Vogt, A. D., Whitaker, N., O’Neill, A., Ausman, K. D., Wen, J., Leon, A. L. D., Malecka, K. A., Laue, T. A., Berkowitz, S. A., et al. (2025) · Journal of Pharmaceutical Sciences · doi:10.1016/j.xphs.2025.103878 · Cited by 1 · see citing works

Improved oncolytic virotherapy by increasing virus spread within tumors.

Wechman, S. L. (2015) · doi:10.18297/etd/2208

Characterization of a mutant oncolytic adenovirus and the role of jnk in enhancing virotherapy.

Wechman, S. L. (2017) · doi:10.18297/etd/2734

Identification and computational analysis of conserved YXXΦ motifs in the pan-serotypes of dengue virus NS5 protein and their implications in host-virus interactions

Khalil, A., Noor, F., Qamar, M. T. U., Liaqat, S., Nahid, N., Haque, A., & Ashfaq, U. A. (2025) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2025.2475224

Detection and characterization of protein methylation in bacteriophages and their host, Cellulophaga baltica , during infection

Stai, A. J., Howard‐Varona, C., Urvoy, M., Gittrich, M. R., Sullivan, M. B., & Hettich, R. L. (2026) · mSystems · doi:10.1128/msystems.00012-26

The phosphoproteome of the adenovirus type 2 virion

Lind, S. B., Artemenko, K. A., Elfineh, L., Zhao, Y., Bergquist, J., & Pettersson, U. (2012) · Virology · doi:10.1016/j.virol.2012.08.012 · Cited by 17 · see citing works

Temporal characterization of the non-structural Adenovirus type 2 proteome and phosphoproteome using high-resolving mass spectrometry

Källsten, M., Gromova, A., Zhao, H., Valdés, A., Konzer, A., Pettersson, U., & Lind, S. B. (2017) · Virology · doi:10.1016/j.virol.2017.08.032 · Cited by 10 · see citing works

Phosphorylation Time‐Course Study of the Response during Adenovirus Type 2 Infection

Valdés, A., Zhao, H., Pettersson, U., & Lind, S. B. (2020) · PROTEOMICS · doi:10.1002/pmic.201900327 · Cited by 10 · see citing works

Phosphoproteins of adenovirus 2

Axelrod, N. (1978) · Virology · doi:10.1016/0042-6822(78)90141-1 · Cited by 93 · see citing works

On-target titanium dioxide-based enrichment for characterization of phosphorylations in the Adenovirus pIIIa protein

Eriksson, A. I. K., Bartsch, M., Bergquist, J., Edwards, K., Lind, S. B., & Hernández, V. A. (2013) · Journal of Chromatography A · doi:10.1016/j.chroma.2013.08.096 · Cited by 7 · see citing works