The DOI matches its Crossref record; 45 of the 46 references it cites were found in a registry or an index.
Estimating Intracellular Calcium Concentrations and Buffering without Wavelength Ratioing
Open accessAbstract
We describe a method for determining intracellular free calcium concentration ([Ca(2+)]) from single-wavelength fluorescence signals. In contrast to previous single-wavelength calibration methods, the proposed method does not require independent estimates of resting [Ca(2+)] but relies on the measurement of fluorescence close to indicator saturation during an experiment. Consequently, it is well suited to [Ca(2+)] indicators for which saturation can be achieved under physiological conditions. In addition, the method requires that the indicators have large dynamic ranges. Popular indicators such as Calcium Green-1 or Fluo-3 fulfill these conditions. As a test of the method, we measured [Ca(2+)] in CA1 pyramidal neurons in rat hippocampal slices using Oregon Green BAPTA-1 and 2-photon laser scanning microscopy (BAPTA: 1,2-bis(2-aminophenoxy)ethane-N,N,N', N'-tetraacetic acid). Resting [Ca(2+)] was 32-59 nM in the proximal apical dendrite. Monitoring action potential-evoked [Ca(2+)] transients as a function of indicator loading yielded estimates of endogenous buffering capacity (44-80) and peak [Ca(2+)] changes at zero added buffer (178-312 nM). In young animals (postnatal days 14-17) our results were comparable to previous estimates obtained by ratiometric methods (, Biophys. J. 70:1069-1081), and no significant differences were seen in older animals (P24-28). We expect our method to be widely applicable to measurements of [Ca(2+)] and [Ca(2+)]-dependent processes in small neur…
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“relative to the resting level of intracellular Ca2+ (20–50 nM) (109–111)”
From Synaptic memory and CaMKII (2023) · cites this paper as [110]
In the citing paper
“The unusually high Hill coefficient of ∼6 for CaMKII (108) and the high requirement for Ca2+ (half maximal of ∼1.6 µM at saturating CaM) compared to the resting level of Ca2+ (20–50 nM) (109, 110) ensures maintenance of the synapse specificity and Hebbian nature of LTP (19).”
From Synaptic memory and CaMKII (2023) · cites this paper as [110]
Citations
Cites
A new generation of Ca2+ indicators with greatly improved fluorescence properties.
Grynkiewicz, G., Poenie, M., & Tsien, R. Y. (1985) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)83641-4 · Cited by 21,562
Two-photon laser scanning fluorescence microscopy
Denk, W., Strickler, J. H., & Webb, W. W. (1990) · Science · doi:10.1126/science.2321027 · Cited by 9,488
Polazzi, E., Mengoni, I., Caprini, M., Peña‐Altamira, E., Kurtys, E., & Monti, B. (2012) · Neurosignals · doi:10.1159/000337115 · Cited by 9,023
Handbook Of Biological Confocal Microscopy
Pawley, J. B. (2006) · Springer eBooks · doi:10.1007/978-0-387-45524-2 · Cited by 3,685
Handbook of Biological Confocal Microscopy
Pawley, J. B. (1995) · Springer eBooks · doi:10.1007/978-1-4757-5348-6 · Cited by 1,872
Fluorescent indicators for cytosolic calcium based on rhodamine and fluorescein chromophores
Minta, A., Kao, J. P. Y., & Tsien, R. Y. (1989) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)83165-9 · Cited by 1,621
A Synaptically Controlled, Associative Signal for Hebbian Plasticity in Hippocampal Neurons
Magee, J. C., & Johnston, D. (1997) · Science · doi:10.1126/science.275.5297.209 · Cited by 1,340
Dendritic spines as basic functional units of neuronal integration
Yuste, R., & Denk, W. (1995) · Nature · doi:10.1038/375682a0 · Cited by 950
In vivo dendritic calcium dynamics in neocortical pyramidal neurons
Svoboda, K., Denk, W. T., Kleinfeld, D., & Tank, D. W. (1997) · Nature · doi:10.1038/385161a0 · Cited by 820
Self-citationPhotochemically generated cytosolic calcium pulses and their detection by fluo-3
Kao, J. P. Y., Harootunian, A. T., & Tsien, R. Y. (1989) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)83166-0 · Cited by 810
Calcium gradients and buffers in bovine chromaffin cells.
Neher, E., & Augustine, G. J. (1992) · The Journal of Physiology · doi:10.1113/jphysiol.1992.sp019127 · Cited by 753
A Practical Guide to the Preparation of Ca2+ Buffers
Bers, D. M., Patton, C. W., & Nuccitelli, R. (1994) · Methods in cell biology · doi:10.1016/s0091-679x(08)61108-5 · Cited by 736
Photon Upmanship: Why Multiphoton Imaging Is More than a Gimmick
Denk, W. T., & Svoboda, K. (1997) · Neuron · doi:10.1016/s0896-6273(00)81237-4 · Cited by 679
Self-citationFluorescent Probes of Cell Signaling
Tsien, R. Y. (1989) · Annual Review of Neuroscience · doi:10.1146/annurev.ne.12.030189.001303 · Cited by 646
Ca2+ buffering and action potential-evoked Ca2+ signaling in dendrites of pyramidal neurons
Helmchen, F., Imoto, K., & Sakmann, B. (1996) · Biophysical Journal · doi:10.1016/s0006-3495(96)79653-4 · Cited by 559
Calcium action potentials restricted to distal apical dendrites of rat neocortical pyramidal neurons
Schiller, J., Schiller, Y., Stuart, G. J., & Sakmann, B. J. (1997) · The Journal of Physiology · doi:10.1111/j.1469-7793.1997.605ba.x · Cited by 528
Dendritic spines as individual neuronal compartments for synaptic Ca2+ responses
Müller, W. S., & Connor, J. A. (1991) · Nature · doi:10.1038/354073a0 · Cited by 479
[14] Measurement of cytosolic free Ca2+ with quin2
Tsien, R. Y., & Pozzan, T. (1989) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(89)72017-6 · Cited by 472
The spread of Na+ spikes determines the pattern of dendritic Ca2+ entry into hippocampal neurons
Jaffe, D. B., Johnston, D., Lasser‐Ross, N., Lisman, J. E., Miyakawa, H., & Ross, W. N. (1992) · Nature · doi:10.1038/357244a0 · Cited by 396
Markram, H., Helm, P. J., & Sakmann, B. J. (1995) · The Journal of Physiology · doi:10.1113/jphysiol.1995.sp020708 · Cited by 387
Koester, H. J., & Sakmann, B. J. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.16.9596 · Cited by 348
Synaptic calcium transients in single spines indicate that NMDA receptors are not saturated
Mainen, Z. F., Malinow, R., & Svoboda, K. (1999) · Nature · doi:10.1038/20187 · Cited by 315
Self-citationTwo types of calcium response limited to single spines in cerebellar Purkinje cells.
Denk, W. T., Sugimori, M., & Llinas, R. H. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.18.8279 · Cited by 284
The role of presynaptic calcium in short-term enhancement at the hippocampal mossy fiber synapse
Regehr, W. G., Delaney, K., & Tank, D. W. (1994) · Journal of Neuroscience · doi:10.1523/jneurosci.14-02-00523.1994 · Cited by 269
Ca2+ Fluorescence Imaging with Pico- and Femtosecond Two-Photon Excitation: Signal and Photodamage
Koester, H. J., Baur, D., Uhl, R., & Hell, S. W. (1999) · Biophysical Journal · doi:10.1016/s0006-3495(99)77063-3 · Cited by 265
Spread of dendritic excitation in layer 2/3 pyramidal neurons in rat barrel cortex in vivo
Svoboda, K., Helmchen, F., Denk, W. T., & Tank, D. W. (1999) · Nature Neuroscience · doi:10.1038/4569 · Cited by 259
Self-citationKönig, K., Becker, T., Fischer, P., Riemann, I., & Halbhuber, K. J. (1999) · Optics Letters · doi:10.1364/ol.24.000113 · Cited by 259
Optical imaging of calcium accumulation in hippocampal pyramidal cells during synaptic activation
Regehr, W. G., Connor, J. A., & Tank, D. W. (1989) · Nature · doi:10.1038/341533a0 · Cited by 256
Schiller, J., Schiller, Y., & Clapham, D. E. (1998) · Nature Neuroscience · doi:10.1038/363 · Cited by 237
Resting myoplasmic free calcium in frog skeletal muscle fibers estimated with fluo-3
Harkins, A. B., Kurebayashi, N., & Baylor, S. M. (1993) · Biophysical Journal · doi:10.1016/s0006-3495(93)81112-3 · Cited by 226
Schiller, J., Helmchen, F., & Sakmann, B. J. (1995) · The Journal of Physiology · doi:10.1113/jphysiol.1995.sp020902 · Cited by 223
Calcium transients in cerebellar Purkinje neurons evoked by intracellular stimulation
Lev‐Ram, V., Miyakawa, H., Lasser‐Ross, N., & Ross, W. N. (1992) · Journal of Neurophysiology · doi:10.1152/jn.1992.68.4.1167 · Cited by 216
Two-Photon Imaging in Living Brain Slices
Mainen, Z. F., Maletić‐Savatić, M., Shi, S., Hayashi, Y., Malinow, R., & Svoboda, K. (1999) · Methods · doi:10.1006/meth.1999.0776 · Cited by 175
Self-citationCalcium transients in cerebellar granule cell presynaptic terminals
Regehr, W. G., & Atluri, P. P. (1995) · Biophysical Journal · doi:10.1016/s0006-3495(95)80398-x · Cited by 165
Fluorophores for Confocal Microscopy
Tsien, R. Y., & Waggoner, A. S. (1995) · Springer eBooks · doi:10.1007/978-1-4757-5348-6_16 · Cited by 147
Use of fura red as an intracellular calcium indicator in frog skeletal muscle fibers
Kurebayashi, N., Harkins, A. B., & Baylor, S. M. (1993) · Biophysical Journal · doi:10.1016/s0006-3495(93)81564-9 · Cited by 142
Optical Measurement of Presynaptic Calcium Currents
Sabatini, B. L., & Regehr, W. G. (1998) · Biophysical Journal · doi:10.1016/s0006-3495(98)77867-1 · Cited by 129
Self-citationInduction of Filopodia by Direct Local Elevation of Intracellular Calcium Ion Concentration
Lau, P.-M., Zucker, R. S., & Bentley, D. (1999) · The Journal of Cell Biology · doi:10.1083/jcb.145.6.1265 · Cited by 97
O'Malley, D. (1994) · Journal of Neuroscience · doi:10.1523/jneurosci.14-10-05741.1994 · Cited by 85
Visualization of quantal synaptic transmission by dendritic calcium imaging.
Murphy, T. H., Baraban, J., Wier, W., & Blatter, L. (1994) · Science · doi:10.1126/science.7904774 · Cited by 76
Presynaptic calcium dynamics at the frog retinotectal synapse
Feller, M. B., Delaney, K. R., & Tank, D. W. (1996) · Journal of Neurophysiology · doi:10.1152/jn.1996.76.1.381 · Cited by 54
Fluorescent Calcium Indicators: Subcellular Behavior and Use in Confocal Imaging
O’Malley, D. M., Burbach, B. J., & Adams, P. R. (2003) · Humana Press eBooks · doi:10.1385/1-59259-722-x:261 · Cited by 28
Busa, W. B. (1992) · Cell Calcium · doi:10.1016/0143-4160(92)90066-2 · Cited by 24
Nakajima, K., Harada, K., Ebina, Y., Yoshimura, T., Ito, H., Ban, T., & Shingai, R. (1993) · Brain Research · doi:10.1016/0006-8993(93)91255-q · Cited by 18
Effects of injecting calcium-buffer solution on [Ca2+]i in voltage-clamped snail neurons
Kennedy, H. J., & Thomas, R. (1996) · Biophysical Journal · doi:10.1016/s0006-3495(96)79778-3 · Cited by 17
Cited by
Sorted by citations
Goll, D. E., Thompson, V. F., Li, H., WEI, W., & Cong, J. (2003) · Physiological Reviews · doi:10.1152/physrev.00029.2002 · Cited by 2,899
Structure and function of dendritic spines
Nimchinsky, E. A., Sabatini, B. L., & Svoboda, K. (2002) · Annual Review of Physiology · doi:10.1146/annurev.physiol.64.081501.160008 · Cited by 1,208
Self-citationPrinciples of two-photon excitation microscopy and its applications to neuroscience
Svoboda, K., & Yasuda, R. (2006) · Neuron · doi:10.1016/j.neuron.2006.05.019 · Cited by 1,027
Self-citationFast and sensitive GCaMP calcium indicators for imaging neural populations
Zhang, Y., Rózsa, M., Liang, Y., Bushey, D., Wei, Z., Zheng, J., Reep, D., Broussard, G. J., Tsang, A., Tsegaye, G., et al. (2023) · Nature · doi:10.1038/s41586-023-05828-9 · Cited by 953
Self-citationThe Life Cycle of Ca2+ Ions in Dendritic Spines
Sabatini, B. L., Oertner, T. G., & Svoboda, K. (2002) · Neuron · doi:10.1016/s0896-6273(02)00573-1 · Cited by 745
Self-citation
Metadata
- Authors
- Maravall, M., Mainen, Z. F., Sabatini, B. L., & Svoboda, K.
- Affiliations
- Cold Spring Harbor Laboratory (US)
- Corresponding author
- Svoboda, K.
- Venue
- Biophysical Journal
- Publisher
- Elsevier BV
- Published
- 2000-05
- Volume
- 78
- Issue
- 5
- Pages
- 2655-2667
- ISSN
- 0006-3495 (ISSN-L)
- PMC
- PMC1300854
- OpenAlex
- W1981195606
- Cited by
- 416
- References
- 46
- Citations by year
- 2026: 8 · 2025: 11 · 2024: 18 · 2023: 13 · 2022: 11 · 2021: 10 · 2020: 13 · 2019: 19 · 2018: 25 · 2017: 18 · 2016: 17 · 2015: 23 · 2014: 22 · 2013: 21 · 2012: 31
- FWCI
- 5.44
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Biophysical Journal (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory) (acceptedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biophysics › Advanced Fluorescence Microscopy Techniques
- Life Sciences › Neuroscience › Sensory Systems › Ion Channels and Receptors
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Keywords
- intracellular calcium concentration, CA1 pyramidal neurons, hippocampal slices, dendritic calcium
- MeSH terms
- Action Potentials, Animals, Biophysics, Buffers, Calcium, Intracellular Fluid, Models, Biological, Pyramidal Cells, Calcium Signaling, Rats, Biophysical Phenomena, In Vitro Techniques
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review