The increment of SII-facilitated transcript cleavage varies dramatically between elongation competent and incompetent RNA polymerase II ternary complexes

FASEB J

Kerppola (1991)

Oncogene

Spencer (1990)

J. Biol. Chem

Dedrick (1987)

Biochemistry

Kerppola (1990)

J. Mol. Biol

Reines (1987)

J. Biol. Chem

Reines (1989)

Mol. Cell. Biol

Bengal (1991)

J. Biol. Chem

Izban (1992)

J. Biol. Chem

Wiest (1992)

J. Biol. Chem

Resnekov (1989)

Genes & Dev

Izban (1992)

Genes & Dev

Izban (1991)

Proc. Natl. Acad. Sci. U. S. A

Rice (1991)

Proc. Natl. Acad. Sci. U. S. A

Sawadogo (1985)

J. Biol. Chem

Rappaport (1987)

J. Biol. Chem

Flores (1990)

Nucleic Acids Res

Yoo (1991)

J. Biol. Chem

SivaRaman (1990)

J. Biol. Chem

Reines (1992)

J. Biol. Chem

Reines (1992)

Mol. Cell. Biol

Price (1989)

J. Biol. Chem

Lee (1990)

Genes & Dev

Landick (1990)

J. Mol. Biol

Reynolds (1992)

Mol. Cell. Biol

Wiest (1990)

J. Mol. Biol

Reynolds (1992)

Biochemistry

Yager (1991)

Mol. Cell. Biol

Linn (1991)

Science

Kainz (1992)

Proc. Natl. Acad. Sci. U. S. A

Surratt (1991)

J. Biol. Chem

Stevens (1969)

Eur. J. Biochem

Mi (1983)

Cell

Grayhack (1985)

J. Biol. Chem

Izban (1993)

Metazoan promoters: emerging characteristics and insights into transcriptional regulation

Lenhard, B., Sandelin, A., & Carninci, P. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3163 · Cited by 513 · see citing works

BASIC MECHANISMS OF TRANSCRIPT ELONGATION AND ITS REGULATION

Uptain, S. M., Kane, C. M., & Chamberlin, M. J. (1997) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.66.1.117 · Cited by 445 · see citing works

The RNA–DNA Hybrid Maintains the Register of Transcription by Preventing Backtracking of RNA Polymerase

Nudler, E., MUSTAEV, A. A., Goldfarb, A., & LUKHTANOV, E. A. (1997) · Cell · doi:10.1016/s0092-8674(00)80180-4 · Cited by 441 · see citing works

Structural basis of RNA polymerase II backtracking, arrest and reactivation

Cheung, A. C. M., & Cramer, P. (2011) · Nature · doi:10.1038/nature09785 · Cited by 373 · see citing works

Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template.

Donahue, B. A., Yin, S., Taylor, J., Reines, D., & Hanawalt, P. C. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.18.8502 · Cited by 358 · see citing works

Architecture of the RNA Polymerase II-TFIIS Complex and Implications for mRNA Cleavage

Kettenberger, H., Armache, K., & Cramer, P. (2003) · Cell · doi:10.1016/s0092-8674(03)00598-1 · Cited by 355 · see citing works

Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded

Komissarova, N. V., & Kashlev, M. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.5.1755 · Cited by 341 · see citing works

Recycling of the general transcription factors during RNA polymerase II transcription.Preprint

Zawel, L. S., Kumar, K. P., & Reinberg, D. (1995) · Genes & Development · doi:10.1101/gad.9.12.1479 · Cited by 320 · see citing works

Exchange of RNA Polymerase II Initiation and Elongation Factors during Gene Expression In Vivo

Pokholok, D., Hannett, N. M., & Young, R. A. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00502-6 · Cited by 311 · see citing works

Nucleosomes Can Form a Polar Barrier to Transcript Elongation by RNA Polymerase II

Bondarenko, V. A., Steele, L. M., Újvári, A., Gaykalova, D. A., Kulaeva, O. I., Polikanov, Y. S., Luse, D. S., & Studitsky, V. M. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.09.009 · Cited by 272 · see citing works

RNA Polymerase Switches between Inactivated and Activated States By Translocating Back and Forth along the DNA and the RNA

Komissarova, N., & Kashlev, M. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.24.15329 · Cited by 269 · see citing works

The RNA Polymerase II Elongation Complex

Shilatifard, A., Conaway, R. C., & Conaway, J. W. (2003) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.72.121801.161551 · Cited by 253 · see citing works

Transcriptional Fidelity and Proofreading by RNA Polymerase II

Thomas, M. J., Platas, A. A., & Hawley, D. K. (1998) · Cell · doi:10.1016/s0092-8674(00)81191-5 · Cited by 252 · see citing works

Structural Basis of Transcription: Backtracked RNA Polymerase II at 3.4 Angstrom Resolution

Wang, D., Bushnell, D. A., Huang, X., Westover, K. D., Levitt, M., & Kornberg, R. D. (2009) · Science · doi:10.1126/science.1168729 · Cited by 241 · see citing works

Promoting elongation with transcript cleavage stimulatory factors

Fish, R. N., & Kane, C. M. (2002) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/s0167-4781(02)00459-1 · Cited by 236 · see citing works

Nature of the Nucleosomal Barrier to RNA Polymerase II

Kireeva, M. L., Hancock, B., Cremona, G. H., Walter, W., Studitsky, V. M., & Kashlev, M. (2005) · Molecular Cell · doi:10.1016/j.molcel.2005.02.027 · Cited by 227 · see citing works

Checkpoints controlling mitosis

Clarke, D. J., & Giménez-Abián, J. F. (2000) · BioEssays · doi:10.1002/(sici)1521-1878(200004)22:4 · Cited by 101 · see citing works

Intrinsic transcript cleavage activity of RNA polymerase.

Orlova, M. O., Newlands, J. T., Das, A., et al. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.10.4596 · Cited by 209 · see citing works

RNA polymerase II speed: a key player in controlling and adapting transcriptome composition

Muniz, L., Nicolas, E., & Trouche, D. (2021) · The EMBO Journal · doi:10.15252/embj.2020105740 · Cited by 203 · see citing works

Unified two‐metal mechanism of RNA synthesis and degradation by RNA polymerase

Sosunov, V. V., Sosunova, E., Mustaev, A., Bass, I., Nikiforov, V., & Goldfarb, A. (2003) · The EMBO Journal · doi:10.1093/emboj/cdg193 · Cited by 198 · see citing works

The RNA cleavage activity of RNA polymerase III is mediated by an essential TFIIS-like subunit and is important for transcription terminationPreprint

Chédin, S., Riva, M., Schultz, P., Sentenac, A., & Carles, C. (1998) · Genes & Development · doi:10.1101/gad.12.24.3857 · Cited by 175 · see citing works

Fidelity of RNA polymerase II transcription controlled by elongation factor TFIIS

Jeon, C., & Agarwal, K. L. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.24.13677 · Cited by 134 · see citing works

Coupling between transcription termination and RNA polymerase inchworming

Nudler, E., Kashlev, M., Nikiforov, V., et al. (1995) · Cell · doi:10.1016/0092-8674(95)90388-7 · Cited by 131 · see citing works

Promoter Proximal Sequences Modulate RNA Polymerase II Elongation by a Novel Mechanism

Reeder, T., & Hawley, D. K. (1996) · Cell · doi:10.1016/s0092-8674(00)81395-1 · Cited by 126 · see citing works

Widespread Backtracking by RNA Pol II Is a Major Effector of Gene Activation, 5′ Pause Release, Termination, and Transcription Elongation Rate

Sheridan, R. M., Fong, N., D’Alessandro, A., & Bentley, D. L. (2019) · Molecular Cell · doi:10.1016/j.molcel.2018.10.031 · Cited by 123 · see citing works

DNA Bending and Wrapping around RNA Polymerase: a “Revolutionary” Model Describing Transcriptional Mechanisms

Coulombe, B., & Burton, Z. F. (1999) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.63.2.457-478.1999 · Cited by 118 · see citing works

Transcription elongation: structural basis and mechanisms

Nudler, E. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.2641 · Cited by 117 · see citing works

The active site of RNA polymerase II participates in transcript cleavage within arrested ternary complexes.

Rudd, M. D., Izban, M. G., & Luse, D. S. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.17.8057 · Cited by 113 · see citing works

Regulation of transcriptional elongation by RNA polymerase II

Bentley, D. L. (1995) · Current Opinion in Genetics & Development · doi:10.1016/0959-437x(95)80010-7 · Cited by 111 · see citing works

Contending with transcriptional arrest during RNAPII transcript elongation

Svejstrup, J. Q. (2007) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2007.02.005 · Cited by 107 · see citing works

Identification of a Decay in Transcription Potential That Results in Elongation Factor Dependence of RNA Polymerase II

Gu, W., & Reines, D. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.19.11238 · Cited by 108 · see citing works

GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure.

Feng, G. H., Lee, D. N., Wang, D., et al. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)31788-x · Cited by 106 · see citing works

Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes

Valen, E., Preker, P., Andersen, P. R., Zhao, X., Chen, Y., Ender, C., Dueck, A., Meister, G., Sandelin, A., & Jensen, T. H. (2011) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2091 · Cited by 99 · see citing works

General Transcription Factors for RNA Polymerase II1

Conaway, R. C., & Conaway, J. W. (1997) · Progress in nucleic acid research and molecular biology · doi:10.1016/s0079-6603(08)61009-0 · Cited by 97 · see citing works

Interaction of Elongation Factors TFIIS and Elongin A with a Human RNA Polymerase II Holoenzyme Capable of Promoter-specific Initiation and Responsive to Transcriptional Activators

Pan, G., Aso, T., & Greenblatt, J. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.39.24563 · Cited by 95 · see citing works

Roles of RNA:DNA hybrid stability, RNA structure, and active site conformation in pausing by human RNA polymerase II

Palangat, M., & Landick, R. C. (2001) · Journal of Molecular Biology · doi:10.1006/jmbi.2001.4842 · Cited by 93 · see citing works

Mutations in the Second Largest Subunit of RNA Polymerase II Cause 6-Azauracil Sensitivity in Yeast and Increased Transcriptional Arrest in Vitro

Powell, W. H., & Reines, D. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.12.6866 · Cited by 93 · see citing works

Transcription Factor S, a Cleavage Induction Factor of the Archaeal RNA Polymerase

Hausner, W., Lange, U., & Musfeldt, M. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.17.12393 · Cited by 91 · see citing works

Nascent RNA cleavage by arrested RNA polymerase II does not require upstream translocation of the elongation complex on DNA.

Gu, W., Powell, W. H., Mote, J., & Reines, D. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)74433-0 · Cited by 81 · see citing works

Evolution of Two Modes of Intrinsic RNA Polymerase Transcript Cleavage

Ruan, W., Lehmann, E., Thomm, M., Kostrewa, D., & Cramer, P. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.222273 · Cited by 77 · see citing works

Amanitin Greatly Reduces the Rate of Transcription by RNA Polymerase II Ternary Complexes but Fails to Inhibit Some Transcript Cleavage Modes

Rudd, M. D., & Luse, D. S. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.35.21549 · Cited by 75 · see citing works

Complexes of yeast RNA polymerase II and RNA are substrates for TFIIS-induced RNA cleavage

Johnson, T., & Chamberlin, M. J. (1994) · Cell · doi:10.1016/0092-8674(94)90314-x · Cited by 73 · see citing works

FCP1, a Phosphatase Specific for the Heptapeptide Repeat of the Largest Subunit of RNA Polymerase II, Stimulates Transcription Elongation

Mandal, S. S., Cho, H. K., Kim, S., Cabane, K., & Reinberg, D. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.21.7543-7552.2002 · Cited by 67 · see citing works

Hydrolytic cleavage of nascent RNA in RNA polymerase III ternary transcription complexes.

Whitehall, S. K., Bardeleben, C., & Kassavetis, G. A. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)42168-5 · Cited by 67 · see citing works

Processing of Nontelomeric 3′ Ends by Telomerase: Default Template Alignment and Endonucleolytic Cleavage

Melek, M., Greene, E. C., & Shippen, D. E. (1996) · Molecular and Cellular Biology · doi:10.1128/mcb.16.7.3437 · Cited by 67 · see citing works

Increased accommodation of nascent RNA in a product site on RNA polymerase II during arrest.

Gu, W., Wind, M., & Reines, D. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.14.6935 · Cited by 63 · see citing works

Action of α-Amanitin during Pyrophosphorolysis and Elongation by RNA Polymerase II

Chafin, D. R., Guo, H., & Price, D. H. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.32.19114 · Cited by 58 · see citing works

Purified yeast RNA polymerase II reads through intrinsic blocks to elongation in response to the yeast TFIIS analogue, P37.

Christie, K., Awrey, D. E., Edwards, A. M., & Kane, C. M. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)42202-2 · Cited by 58 · see citing works

RNA cleavage and chain elongation by Escherichia coli DNA-dependent RNA polymerase in a binary enzyme.RNA complex.

Altmann, C. R., Solow-Cordero, D. E., & Chamberlin, M. J. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.9.3784 · Cited by 58 · see citing works

Purification of a human polyribosome-associated 3‘ to 5‘ exoribonuclease.

Caruccio, N., & Ross, J. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)31768-x · Cited by 56 · see citing works

Transcription Factors IIF and IIS and Nucleoside Triphosphate Substrates as Dynamic Probes of the Human RNA Polymerase II Mechanism

Zhang, C., & Burton, Z. F. (2004) · Journal of Molecular Biology · doi:10.1016/j.jmb.2004.07.070 · Cited by 54 · see citing works

Genetic Interactions of DST1 in Saccharomyces cerevisiae Suggest a Role of TFIIS in the Initiation-Elongation Transition

Malagón, F., Tong, A. H. Y., Shafer, B. K., & Strathern, J. N. (2004) · Genetics · doi:10.1534/genetics.166.3.1215 · Cited by 53 · see citing works

Transcriptional Properties of RNA Polymerase II within Triplet Repeat-containing DNA from the Human Myotonic Dystrophy and Fragile X Loci

Parsons, M. A., Sinden, R. R., & Izban, M. G. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.41.26998 · Cited by 49 · see citing works

In vitro characterization of mutant yeast RNA polymerase II with reduced binding for elongation factor TFIIS.

Wu, J., Awrey, D. E., Edwards, A. M., Archambault, J., & Friesen, J. D. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.21.11552 · Cited by 50 · see citing works

Promoter Clearance by RNA Polymerase II Is an Extended, Multistep Process Strongly Affected by Sequence

Pal, M., McKean, D. M., & Luse, D. S. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.17.5815-5825.2001 · Cited by 47 · see citing works

A novel RNA polymerase I-dependent RNase activity that shortens nascent transcripts from the 3′ end

Tschochner, H. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.23.12914 · Cited by 46 · see citing works

Translocation and Transcriptional Arrest during Transcript Elongation by RNA Polymerase II

Samkurashvili, I., & Luse, D. S. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.38.23495 · Cited by 45 · see citing works

Transcriptional pause, arrest and termination sites for RNA polymerase II in mammalian N- and c-mycgenes

Keene, R. G., Mueller, A., Robert, L., et al. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.15.3173 · Cited by 45 · see citing works

RNA Polymerase II Transcription Complexes May Become Arrested If the Nascent RNA Is Shortened to Less than 50 Nucleotides

Uájvári, A., Pal, M., & Luse, D. S. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m201145200 · Cited by 45 · see citing works

Efficient and Rapid Nucleosome Traversal by RNA Polymerase II Depends on a Combination of Transcript Elongation Factors

Luse, D. S., Spangler, L. C., & Újvári, A. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.174722 · Cited by 44 · see citing works

Combinatorial Control of Human RNA Polymerase II (RNAP II) Pausing and Transcript Cleavage by Transcription Factor IIF, Hepatitis δ Antigen, and Stimulatory Factor II

Zhang, C., Honggao Yan, A., & Burton, Z. F. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m307590200 · Cited by 43 · see citing works

Structural Changes in the RNA Polymerase II Transcription Complex during Transition from Initiation to Elongation

Samkurashvili, I., & Luse, D. S. (1998) · Molecular and Cellular Biology · doi:10.1128/mcb.18.9.5343 · Cited by 43 · see citing works

Structure and Function of RNA Polymerase II

Cramer, P. (2004) · Advances in protein chemistry · doi:10.1016/s0065-3233(04)67001-x · Cited by 43 · see citing works

Cleavage of the nascent transcript induced by TFIIS is insufficient to promote read-through of intrinsic blocks to elongation by RNA polymerase II.

Cipres-Palacin, G., & Kane, C. M. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.17.8087 · Cited by 42 · see citing works

Variation in the Size of Nascent RNA Cleavage Products as a Function of Transcript Length and Elongation Competence

Gu, W., & Reines, D. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.51.30441 · Cited by 42 · see citing works

Transcription elongation factor S‐II maintains transcriptional fidelity and confers oxidative stress resistance

Koyama, H., Ito, T., Nakanishi, T., Kawamura, N., & Sekimizu, K. (2003) · Genes to Cells · doi:10.1046/j.1365-2443.2003.00677.x · Cited by 40 · see citing works

Transcription Factors TFIIF, ELL, and Elongin Negatively Regulate SII-induced Nascent Transcript Cleavage by Non-arrested RNA Polymerase II Elongation Intermediates

Elmendorf, B. J., Shilatifard, A., Yan, Q., Conaway, J. W., & Conaway, R. C. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m101445200 · Cited by 39 · see citing works

Intrinsic Transcript Cleavage in Yeast RNA Polymerase II Elongation Complexes

Weilbaecher, R. G., Awrey, D. E., Edwards, A. M., & Kane, C. M. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m211197200 · Cited by 36 · see citing works

Dissecting Chemical Interactions Governing RNA Polymerase II Transcriptional Fidelity

Kellinger, M. W., Ulrich, S., Chong, J. P. C., Kool, E. T., & Wang, D. (2012) · Journal of the American Chemical Society · doi:10.1021/ja302077d · Cited by 35 · see citing works

Nuclease Cleavage of the Upstream Half of the Nontemplate Strand DNA in an Escherichia coli Transcription Elongation Complex Causes Upstream Translocation and Transcriptional Arrest

Wang, D., & Landick, R. C. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.9.5989 · Cited by 33 · see citing works

Evidence that the Transcription Elongation Function of Rpb9 Is Involved in Transcription-Coupled DNA Repair in Saccharomyces cerevisiae

Li, S., Ding, B., Chen, R., Ruggiero, C., & Chen, X. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.01656-06 · Cited by 31 · see citing works

Millisecond phase kinetic analysis of elongation catalyzed by human, yeast, and Escherichia coli RNA polymerase

Kireeva, M. L., Nedialkov, Y. A., Gong, X. Q., Zhang, C., Xiong, Y., Moon, W. J., Burton, Z. F., & Kashlev, M. (2009) · Methods · doi:10.1016/j.ymeth.2009.04.008 · Cited by 31 · see citing works

Human RNA Polymerase II Elongation in Slow Motion: Role of the TFIIF RAP74 α1 Helix in Nucleoside Triphosphate-Driven Translocation

Zhang, C., Zobeck, K. L., & Burton, Z. F. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.9.3583-3595.2005 · Cited by 30 · see citing works

Factor-dependent Release of Nascent RNA by Ternary Complexes of Vaccinia RNA Polymerase

Deng, L., Hagler, J., & Shuman, S. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.32.19556 · Cited by 29 · see citing works

Elongation Factor SII Contacts the 3′-End of RNA in the RNA Polymerase II Elongation Complex

Powell, W. H., Bartholomew, B., & Reines, D. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.37.22301 · Cited by 29 · see citing works

Substrate Specificity of the RNase Activity of Yeast RNA Polymerase III

Bobkova, E. V., & Hall, B. D. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.36.22832 · Cited by 28 · see citing works

Interaction of RNA Polymerase II Fork Loop 2 with Downstream Non-template DNA Regulates Transcription Elongation

Kireeva, M. L., Domecq, C., Coulombe, B., Burton, Z. F., & Kashlev, M. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.260844 · Cited by 26 · see citing works

RNA Polymerase II Ternary Complexes May Become Arrested after Transcribing to within 10 Bases of the End of Linear Templates

Izban, M. G., Samkurashvili, I., & Luse, D. S. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.5.2290 · Cited by 26 · see citing works

GreA-induced transcript cleavage is accompanied by reverse translocation to a different transcription complex conformation.

Lee, D. N., Feng, G., & Landick, R. C. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)31789-1 · Cited by 25 · see citing works

Activation and reactivation of the RNA polymerase II trigger loop for intrinsic RNA cleavage and catalysis

Čabart, P., Jin, H., Li, L., & Kaplan, C. D. (2014) · Transcription · doi:10.4161/trns.28869 · Cited by 23 · see citing works

Differential Blocking Effects of the Acetaldehyde-derived DNA Lesion N2-Ethyl-2′-deoxyguanosine on Transcription by Multisubunit and Single Subunit RNA Polymerases

Cheng, T., Hu, X., Gnatt, A. L., & Brooks, P. J. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m804086200 · Cited by 21 · see citing works

Flexible Positioning of the Telomerase-Associated Nuclease Leads to Preferential Elimination of Nontelomeric DNA

Greene, E. C., Bednenko, J., & Shippen, D. E. (1998) · Molecular and Cellular Biology · doi:10.1128/mcb.18.3.1544 · Cited by 20 · see citing works

Cockayne Syndrome Linked to Elevated R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation

Zhang, X., Xu, J., Hu, J., Zhang, S., Hao, Y., Zhang, D., Qian, H., Wang, D., & Fu, X. (2024) · Nature Communications · doi:10.1038/s41467-024-50298-w · Cited by 19 · see citing works

Comparative TFIIS-mediated transcript cleavage by mammalian RNA polymerase II arrested at a lesion in different transcription systems

Kalogeraki, V. S., Tornaletti, S., Cooper, P. K., & Hanawalt, P. C. (2005) · DNA repair · doi:10.1016/j.dnarep.2005.05.007 · Cited by 19 · see citing works

Mutational Analysis of the Hydrolytic Activity of Yeast RNA Polymerase III

Bobkova, E. V., Habib, N. F., Alexander, G., et al. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.30.21342 · Cited by 19 · see citing works

Transcript Cleavage in an RNA Polymerase I Elongation Complex

Labhart, P. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.14.9055 · Cited by 19 · see citing works

Persistence of backtracking by human RNA polymerase II

Yang, K. B., Rasouly, A., Epshtein, V., Martinez, C., Nguyen, T. D., Shamovsky, I., & Nudler, E. (2024) · Molecular Cell · doi:10.1016/j.molcel.2024.01.019 · Cited by 16 · see citing works

The mechanism of nucleosome traversal by RNA polymerase II

Luse, D. S., & Studitsky, V. M. (2011) · RNA Biology · doi:10.4161/rna.8.4.15389 · Cited by 15 · see citing works

Restricted Expression of a Member of the Transcription Elongation Factor S-II Family in Testicular Germ Cells during and after Meiosis

Umehara, T., Kida, S., Hasegawa, S., et al. (1997) · The Journal of Biochemistry · doi:10.1093/oxfordjournals.jbchem.a021627 · Cited by 15 · see citing works

Mechanism of Action of RNA Polymerase II Elongation Factor Elongin

Moreland, R. J., Hanas, J. S., Conaway, J. W., et al. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.41.26610 · Cited by 15 · see citing works

The Transition from Initiation to Elongation by RNA Polymerase IIPreprint

Luse, D. S., & Samkurashvili, I. (1998) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.1998.63.289 · Cited by 14 · see citing works

Rearrangement of the RNA polymerase subunit H and the lower jaw in archaeal elongation complexes

Grünberg, S., Reich, C., Zeller, M. E., Bartlett, M. S., & Thomm, M. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp1190 · Cited by 11 · see citing works

Genetic Interactions Between TFIIF and TFIIS

Fish, R. N., Ammerman, M. L., Davie, J. K., Lu, B., Pham, C. C., Howe, L. J., Ponticelli, A. S., & Kane, C. M. (2006) · Genetics · doi:10.1534/genetics.106.058834 · Cited by 11 · see citing works

Assays for Investigating Transcription by RNA Polymerase IIin Vitro

Reines, D., Dvir, A., Conaway, J. W., & Conaway, R. C. (1997) · Methods · doi:10.1006/meth.1997.0471 · Cited by 8 · see citing works

RNA polymerase II complexes in the very early phase of transcription are not susceptible to TFIIS-induced exonucleolytic cleavage

Sijbrandi, R. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.11.2290 · Cited by 8 · see citing works

Features of yeast RNA polymerase I with special consideration of the lobe binding subunits

Schwank, K., Schmid, C., Fremter, T., Engel, C., Milkereit, P., Griesenbeck, J., & Tschochner, H. (2023) · Biological Chemistry · doi:10.1515/hsz-2023-0184 · Cited by 7 · see citing works

Template End-to-End Transposition by RNA Polymerase II

Izban, M. G., Parsons, M. A., & Sinden, R. R. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.41.27009 · Cited by 7 · see citing works

Reversible Kinetics in Multi-nucleotide Addition Catalyzed by S. cerevisiae RNA polymerase II Reveal Slow Pyrophosphate Release

Fuller, K. B., Jacobs, R. Q., Schneider, D. A., et al. (2024) · Journal of Molecular Biology · doi:10.1016/j.jmb.2024.168606 · Cited by 5 · see citing works

Isolation and characterization of the gene encoding the Drosophila melanogaster transcriptional elongation factor, TFIIS

Oh, Y., Yoon, J., & Baek, K. (1995) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/0167-4781(95)00055-l · Cited by 4 · see citing works

Crystallization and preliminary X-ray crystallographic analyses ofThermus thermophilusbacktracked RNA polymerase

Murayama, Y., Sekine, S., & Yokoyama, S. (2013) · Acta Crystallographica Section F Structural Biology and Crystallization Communications · doi:10.1107/s1744309113000055 · Cited by 2 · see citing works

The Difference Verification between the Percentage Elongation after the Break of Aluminum Plate and the Totall Percentage Elongation at the Break of Aluminum Plate

Liu, L. (2011) · Yunnan Metallurgy

Effects of Sudden Changes of Temperature on Elongation Rate of Primary Root

Fox, L. E. (1937) · Botanical Gazette · doi:10.1086/334698

The elongation rate at the base of a maize leaf shows an invariant pattern during both the steady‐state elongation and the establishment of the elongation zone

Muller, B., Reymond, M., & Tardieu, F. (2001) · Journal of Experimental Botany · doi:10.1093/jexbot/52.359.1259 · Cited by 75 · see citing works

MECHANICAL BEHAVIOR OF CRIMPED SYNTHETIC YARN

Takeuchi, T. (1966) · Sen i Gakkaishi · doi:10.2115/fiber.22.558

Elongation analysis of coiled tubing

Gao, D. (2012) · Oil Drilling & Production Technology