The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Prediction of Human Protein Function from Post-translational Modifications and Localization Features
Overview
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Citations
Cites
Cluster analysis and display of genome-wide expression patterns
Eisen, M. B., Spellman, P. T., Brown, P. O., & Botstein, D. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.25.14863 · Cited by 16,184
The sequence of the human genome
Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G., Smith, H. O., Yandell, M., Evans, C. A., Holt, R. A., et al. (2001) · Science · doi:10.1126/science.1058040 · Cited by 13,909
Nakai, K., & Horton, P. (1999) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(98)01336-x · Cited by 2,181 · cited 1×
“As several predictive methods for PTMs have been constructed (R.G., S.B., unpublished results), 10–13 a function prediction method based on such attributes can be applied to all proteins where the sequence is known.”
Method
Cited by
A large-scale evaluation of computational protein function prediction
Radivojac, P., Clark, W. T., Oron, T. R., Schnoes, A. M., Wittkop, T., Sokolov, A., Graim, K., Funk, C., Verspoor, K., Ben-Hur, A., et al. (2013) · Nature Methods · doi:10.1038/nmeth.2340 · Cited by 1,028
Zhou, N., Jiang, Y., Bergquist, T. R., Lee, A. J., Kacsoh, B. Z., Crocker, A. W., Lewis, K. A., Georghiou, G., Nguyen, H. N., Hamid, M. N., et al. (2019) · Genome Biology · doi:10.1186/s13059-019-1835-8 · Cited by 452
FFPred 3: feature-based function prediction for all Gene Ontology domains
Cozzetto, D., Minneci, F., Currant, H., & Jones, D. T. (2016) · Scientific Reports · doi:10.1038/srep31865 · Cited by 127
Deep learning in biomedical data science
Baldi, P. (2018) · Annual Review of Biomedical Data Science · doi:10.1146/annurev-biodatasci-080917-013343 · Cited by 119
Contrastive learning on protein embeddings enlightens midnight zone
(2022) · doi:10.1093/nargab/lqac043 · Cited by 105
Metadata
- Authors
- Jensen, L. J., Gupta, R., Blom, N., Devos, D., Tamames, J., Kesmir, C., Nielsen, H., Stærfeldt, H. H., Rapacki, K., Workman, C., Andersen, C. A. F., Knudsen, S., Krogh, A., Valencia, A., & Brunak, S.
- Venue
- Journal of Molecular Biology
- Publisher
- Elsevier BV
- Published
- 2002-06
- Volume
- 319
- Issue
- 5
- Pages
- 1257-1265
- ISSN
- 0022-2836 (ISSN-L)
- OpenAlex
- W2130925474
- Cited by
- 319
- References
- 3
- FWCI
- 7.67
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
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Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
