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[33] Analysis of compositionally biased regions in sequence databases
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Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
Predicting coiled coils from protein sequences.
Lupas, A., Van Dyke, M., & Stock, J. (1991) · Science · doi:10.1126/science.252.5009.1162 · Cited by 3,953
Cited by
BLAST+: architecture and applications
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., & Madden, T. L. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-421 · Cited by 22,074
Intrinsically disordered protein
Dunker, A. K., Lawson, J. D., Brown, C. J., Williams, R. M., Romero, P., Oh, J. S., Oldfield, C. J., Campen, A. M., Ratliff, C. M., Hipps, K. W., et al. (2001) · Journal of Molecular Graphics and Modelling · doi:10.1016/s1093-3263(00)00138-8 · Cited by 2,272
Kato, M., Han, T. W., Xie, S., Shi, K., Du, X., Wu, L. C., Mirzaei, H., Goldsmith, E. J., Longgood, J., Pei, J., et al. (2012) · Cell · doi:10.1016/j.cell.2012.04.017 · Cited by 2,012
A minimal gene set for cellular life derived by comparison of complete bacterial genomes
Mushegian, A. R., & Koonin, E. V. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.19.10268 · Cited by 916
Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling
Uversky, V. N., Oldfield, C. J., & Dunker, A. K. (2005) · Journal of Molecular Recognition · doi:10.1002/jmr.747 · Cited by 847
A Recent Polyploidy Superimposed on Older Large-Scale Duplications in the Arabidopsis Genome
Blanc, G., Hokamp, K., & Wolfe, K. H. (2003) · Genome Research · doi:10.1101/gr.751803 · Cited by 724
eggNOG v4.0: nested orthology inference across 3686 organisms
Powell, S., Forslund, K., Szklarczyk, D., Trachana, K., Roth, A., Huerta-Cepas, J., Gabaldón, T., Rattei, T., Creevey, C., Kuhn, M., et al. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1253 · Cited by 652
RAG1 Core and V(D)J Recombination Signal Sequences Were Derived from Transib Transposons
Kapitonov, V. V., & Jurka, J. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030181 · Cited by 521
Wolf, Y. I., Aravind, L., Grishin, N. V., & Koonin, E. V. (1999) · Genome Research · doi:10.1101/gr.9.8.689 · Cited by 410
The Ensembl Automatic Gene Annotation System
Curwen, V., Eyras, E., Andrews, T. D., Clarke, L., Mongin, E., Searle, S. M. J., & Clamp, M. (2004) · Genome Research · doi:10.1101/gr.1858004 · Cited by 400
Relationship of sequence and phase separation in protein low-complexity regions
Martin, E. W., & Mittag, T. (2018) · Biochemistry · doi:10.1021/acs.biochem.8b00008 · Cited by 389
Did DNA replication evolve twice independently?
Leipe, D. D., Aravind, L., & Koonin, E. V. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.17.3389 · Cited by 351
A heterochromatin-dependent transcription machinery drives piRNA expression
Andersen, P. R., Tirian, L., Vunjak, M., & Brennecke, J. (2017) · Nature · doi:10.1038/nature23482 · Cited by 280
The STIR-domain superfamily in signal transduction, development and immunity
Novatchkova, M., Leibbrandt, A., Werzowa, J., Neubüser, A., & Eisenhaber, F. (2003) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(03)00067-7 · Cited by 255
Translational selection and yeast proteome evolution
Akashi, H. (2003) · Genetics · doi:10.1093/genetics/164.4.1291 · Cited by 245
Origin of primate orphan genes: a comparative genomics approach
Toll-Riera, M., Bosch, N., Bellora, N., Castelo, R., Armengol, L., Estivill, X., & Mar Alba, M. (2008) · Molecular Biology and Evolution · doi:10.1093/molbev/msn281 · Cited by 218
Distribution of Protein Folds in the Three Superkingdoms of Life
Wolf, Y. I., Brenner, S. E., Bash, P. A., & Koonin, E. V. (1999) · Genome Research · doi:10.1101/gr.9.1.17 · Cited by 183
Mushegian, A. R., Garey, J. R., Martin, J., & Liu, L. X. (1998) · Genome Research · doi:10.1101/gr.8.6.590 · Cited by 164
Saul, F. A., Arié, J.-P., Vulliez-le Normand, B., Kahn, R., Betton, J.-M., & Bentley, G. A. (2004) · Journal of Molecular Biology · doi:10.1016/j.jmb.2003.10.056 · Cited by 130
Aravind, L., & Koonin, E. V. (2000) · Genome Research · doi:10.1101/gr.10.8.1172 · Cited by 93
Dissecting the role of low-complexity regions in the evolution of vertebrate proteins
Radó-Trilla, N., & Albà, M. (2012) · BMC Evolutionary Biology · doi:10.1186/1471-2148-12-155 · Cited by 89
Kumar, S., Yin, X., Trapp, B. D., Hoh, J. H., & Paulaitis, M. E. (2002) · Biophysical Journal · doi:10.1016/s0006-3495(02)75581-1 · Cited by 89
Point mutation frequency in the FMR1 gene as revealed by fragile X syndrome screening
Handt, M., Epplen, A., Hoffjan, S., Mese, K., Epplen, J. T., & Dekomien, G. (2014) · Molecular and Cellular Probes · doi:10.1016/j.mcp.2014.08.003 · Cited by 48
Brouwer, M. S. M., Roberts, A. P., Mullany, P., & Allan, E. (2012) · Mobile Genetic Elements · doi:10.4161/mge.19297 · Cited by 34
Realistic artificial DNA sequences as negative controls for computational genomics
Caballero, J., Smit, A. F. A., Hood, L., & Glusman, G. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku356 · Cited by 35
Bell, J., Larson, M., Kutzler, M., Bionaz, M., Löhr, C. V., & Hendrix, D. (2019) · PLOS Computational Biology · doi:10.1371/journal.pcbi.1007309 · Cited by 10
Metadata
- Authors
- Wootton, J. C., & Federhen, S.
- Venue
- Methods in Enzymology
- Publisher
- Elsevier
- Published
- 1996
- Volume
- 266
- Pages
- 554-571
- ISSN
- 0076-6879 (ISSN-L)
- OpenAlex
- W1513332069
- Cited by
- 758
- References
- 2
- FWCI
- 33.65
- Type
- book chapter
- Language
- en
- Open access
- closed
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