Signaling to Chromatin through Histone Modifications

Crystal structure of the nucleosome core particle at 2.8 Å resolution

Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F., & Richmond, T. J. (1997) · Nature · doi:10.1038/38444 · Cited by 9,466

DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139

Rogakou, E. P., Pilch, D. R., Orr, A. H., Ivanova, V. S., & Bonner, W. M. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.10.5858 · Cited by 5,438

Regulation of chromatin structure by site-specific histone H3 methyltransferases

Rea, S., Eisenhaber, F., O'Carroll, D., Strahl, B. D., Sun, Z.-W., Schmid, M., Opravil, S., Mechtler, K., Ponting, C. P., Allis, C. D., et al. (2000) · Nature · doi:10.1038/35020506 · Cited by 2,845

Chromatin Structure: A Repeating Unit of Histones and DNA

Kornberg, R. D. (1974) · Science · doi:10.1126/science.184.4139.868 · Cited by 2,662

Signaling—2000 and Beyond

Hunter, T. (2000) · Cell · doi:10.1016/s0092-8674(00)81688-8 · Cited by 2,586

IAP family proteins---suppressors of apoptosisPreprint

Deveraux, Q. L., & Reed, J. C. (1999) · Genes & Development · doi:10.1101/gad.13.3.239 · Cited by 2,535

Megabase Chromatin Domains Involved in DNA Double-Strand Breaks in Vivo

Rogakou, E. P., Boon, C., Redon, C., & Bonner, W. M. (1999) · The Journal of Cell Biology · doi:10.1083/jcb.146.5.905 · Cited by 2,422

CREB: A Stimulus-Induced Transcription Factor Activated by A Diverse Array of Extracellular Signals

Shaywitz, A. J., & Greenberg, M. E. (1999) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.68.1.821 · Cited by 2,133

Phosphorylated CREB binds specifically to the nuclear protein CBP

Chrivia, J. C., Kwok, R. P. S., Lamb, N., Hagiwara, M., Montminy, M. R., & Goodman, R. H. (1993) · Nature · doi:10.1038/365855a0 · Cited by 2,052

Mitosis-specific phosphorylation of histone H3 initiates primarily within pericentromeric heterochromatin during G2 and spreads in an ordered fashion coincident with mitotic chromosome condensation

Hendzel, M. J., Wei, Y., Mancini, M. A., Hooser, A. A. V., Ranalli, T. A., Brinkley, B. R., Bazett‐Jones, D. P., & Allis, C. D. (1997) · Chromosoma · doi:10.1007/s004120050256 · Cited by 1,860

Histone Acetyltransferases as Potential Targets for Cancer Therapies

Thomson, S., & Mahadevan, L. C. (2002) · Cancer drug discovery and develogment/Cancer drug discovery and development · doi:10.1007/978-1-59259-153-4_6

A Method for the Quantitative Analysis of Protein-Protein Interactions In Vivo

Rall, N. A. (2016) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-5609

Transcription and Epigenetic Regulation

Merchant, J. L. (2012) · Elsevier eBooks · doi:10.1016/b978-0-12-382026-6.00001-4

Roles for Biotinylation of Histones in Chromatin Structure

Sarath, G., Kothapalli, N. R., Zempleni, J., & Camporeale, G. (2005) · Oxidative stress and disease · doi:10.1201/9781420028362.ch9

Epigenetics in Neuropathologies of the Basal Ganglia

Caboche, J., Brami‐Cherrier, K., & Roze, E. F. (2016) · Handbook of behavioral neuroscience · doi:10.1016/b978-0-12-802206-1.00032-5

Profiling dynamic chromatome reveals HP1BP3 as a key regulator of cell cycle and hypoxia cancer progression

Bamaprasad, D. (2014) · DR-NTU (Nanyang Technological University) · doi:10.32657/10356/59912

Regulation of binding of HP1 associated complexes to chromatin and their role in transcription regulation in C. elegans vulva development

Ostwal, Y. B. (2016) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-5901

Epigenetic repression of the NFATc1 transcription factor in human lymphomas

Akimzhanov, A. M. (2005) · Online Publication Service of Würzburg University (Würzburg University)

The role of histone modification and alternative splicing

Ge, Z. (2008)

Sensitive and Specific Proteomic Identification and Quantitation of Murine Cytochrome P450 Enzymes and Histone Post-Translational Modifications using Mass Spectrometry

Hersman, E. (2014)

Epigenetic Pathways Involved in Response to Lead (PB) Exposure in the Aging Brain: Relevance to Alzheimer's Disease

Eid, A. (2016) · Digital Commons - URI (University of Rhode Island) · doi:10.23860/diss-eid-aseel-2016

Control of histone variant H3.3 loading on chromatin

Ivanauskiene, K. (2016) · NORA - Norwegian Open Research Archives

Expressionsregulation der Sac1 Lipidphosphatase in Saccharomyces cerevisiae

Knödler, A. (2007) · heiDOK (Heidelberg University) · doi:10.11588/heidok.00007339

The Mechanism of Stem Cell Differentiation into Smooth Muscle Cells

Simpson, R., & Xu, Q. (2013) · Humana Press eBooks · doi:10.1007/978-1-62703-417-3_1

Pharmacological Inhibition of the G9a/GLP Histone Methyltransferase and Anxiety-related Behaviour in the Mouse

Wang, D. Y. (2016) · TSpace (University of Toronto)

Histone Crosstalks involving H3 Phosphorylation and their Role in Transcriptional Regulation

Lau, N. I. (2013) · TSpace (University of Toronto)

Involvement of CTCF-Mediated Chromatin Loop Structure in Transcription of Clustered G1 Genes after Mitosis

Uehara, A., Goto, S., Fukuoka, M., Ohtsu, M., Niki, K., Kato, D., & Kashiwaba, S.-I. (2015)

The Epigenetics of a Cereal Killer: The Role of DNA Methylation in Pathogenicity and Development of Fusarium graminearum

Bonner, C. (2017) · Carleton University's Institutional Repository (MacOdrum Library, Carleton University) · doi:10.22215/etd/2017-12103

No Oxygen? No Problem! Epigenetic mechanisms of anoxia tolerance in a champion anaerobe, the red-eared slider turtle (Trachemys scripta elegans)

Wijenayake, S. (2017) · Carleton University's Institutional Repository (MacOdrum Library, Carleton University) · doi:10.22215/etd/2017-12053

Structural, functional and inhibition studies of human histone deacetylase 7

Desravines, D. C. (2010) · HAL

Identificação e caracterização de regiões de eucromatina associadas à regulação da expressão gênica e à gordura intramuscular em bovinos da raça Nelore

Morosini, N. S. (2018) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/d.11.2018.tde-29062018-170903

Investigation of the anti-cancer properties of natural products and synthetic analogues with NQO2 inhibiting potential

Adegbesan, B. O. (2018) · Research Explorer (The University of Manchester)

Epigenetic Instability Induced by DNA Base Lesion via DNA Base Excision Repair

Jiang, Z. (2017) · FIU - Digital Commons (Florida International University) · doi:10.25148/etd.fidc003999

Multiple Signaling Routes to Histone Phosphorylation

Crosio, C., & Sassone‐Corsi, P. (2003) · Elsevier eBooks · doi:10.1016/b978-012124546-7/50646-x

Efeitos da idade na glicosilação de histonas de núcleos de neurônios corticais de camundongos

de Souza, T. A. (2015) · doi:10.14393/ufu.di.2015.99

Post-Translational Modifications in Neurodegeneration

Mamun, A. A., & Hossain, M. F. (2020) · Advances in medical diagnosis, treatment, and care (AMDTC) book series · doi:10.4018/978-1-7998-1317-0.ch005

Infant Physical Growth

Lampl, M. (2020) · Cambridge University Press eBooks · doi:10.1017/9781108351959.002

Infant Physical Knowledge

Hespos, S. J., & Anderson, E. M. (2020) · Cambridge University Press eBooks · doi:10.1017/9781108351959.013

Dual Language Exposure and Early Learning

Brito, N. H. (2020) · Cambridge University Press eBooks · doi:10.1017/9781108351959.024

Infant Speech Perception

Reh, R. K., & Werker, J. F. (2020) · Cambridge University Press eBooks · doi:10.1017/9781108351959.021

Development During Infancy in Children Later Diagnosed with Autism Spectrum Disorder

Falck‐Ytter, T., & Jones, E. J. H. (2020) · Cambridge University Press eBooks · doi:10.1017/9781108351959.005

Dynamic Epigenetic Impact of the Environment on the Developing Brain

Champagne, F. A. (2020) · Cambridge University Press eBooks · doi:10.1017/9781108351959.003

Mechanisms of the Cytotoxic Action of Novel Cyclic Hydroxamic Acids

Евгеньевна, Н. М., Aleksandrova, Y. R., Pukhov, S. A., Klochkov, S. G., & Осипов, В. Н. (2020) · Biochemistry (Moscow) Supplement Series B Biomedical Chemistry · doi:10.1134/s1990750820040095

Regulation of the Nuclear Factor of Activated T Cell (NFAT) Family of Transcription Factors in the Freeze Tolerant Wood Frog, Rana sylvatica

Al-attar, R. (2016) · doi:10.22215/etd/2016-11700

The impact of different sources of fatty acids on the fetal programming of atherosclerosis

Gates, L. J. (2021) · Nottingham ePrints (University of Nottingham)

Analyses of Intact Proteins Using Novel Mass Spectrometric Techniques

Anderson, L. C. (2014) · doi:10.18130/v34c23

Epigenetic biomarkers in male infertility and its potential use in assisted reproductive technology

García‐Giménez, J. L., Maciel, V. L., Ferrer-Buitrago, M., Mena, S., & Ruíz-Jorro, M. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-823008-4.00015-9

Studies of Functional Interactions within Yeast Mediator and a Proposed Novel Mechanism for Regulation of Gene Expression

Hallberg, M. (2004) · KTH Publication Database DiVA (KTH Royal Institute of Technology)

References

(2002) · Wiley eBooks · doi:10.1002/9780470695975.refs

Faculty Opinions recommendation of SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.

Jenuwein, T. (2002) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.1007083.87355

Faculty Opinions recommendation of Synergy among nuclear receptor coactivators: selective requirement for protein methyltransferase and acetyltransferase activities.

Workman, J. L. (2002) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.1006307.78955

Molecular Therapies

Abboud, C. N. (2010) · Humana Press eBooks · doi:10.1007/978-1-60761-707-5_16

Genomics and Chromatin Packaging

Sánchez‐Morán, E. (2017) · Annual Plant Reviews online · doi:10.1002/9781119312994.apr0501

Transgene Silencing

Depicker, A., Sanders, M., & Meyer, P. (2017) · Wiley eBooks · doi:10.1002/9781119312994.apr0186

Epigenetics

Montanari, M., Macaluso, M., & Giordano, A. (2013) · Springer eBooks · doi:10.1007/978-3-642-30574-0_29

Preface

Lockman, J. J., & Tamis‐LeMonda, C. S. (2020) · Cambridge University Press eBooks · doi:10.1017/9781108351959.031

Sperm Nucleoproteins

Oliva, R., & Castillo, J. (2013) · Springer eBooks · doi:10.1007/978-1-4614-8459-2_2

References

Galun, E. (2003) · Springer eBooks · doi:10.1007/978-94-017-3582-7_9

Epigenomic Imaging of Neuropsychiatric Diseases

Bahari‐Javan, S. (2013) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-4280

Role of myelin-associated NAD+- dependent deacetylase Sirtuin 2 in modifying axonal degeneration

Kasapoğlu, B. (2013) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-3515

Sugar and HD2 expression: new insights into HD2 plant-specific class of histone deacetylases

Colville, A. (2007) · doi:10.22215/etd/2007-08119

Peer Review #2 of "Epigenetic considerations in aquaculture (v0.1)"

(2017) · PeerJ · doi:10.7287/peerj.4147v0.1/reviews/2

Transcription and Epigenetic Regulation

Merchant, J. L. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-809954-4.00001-3

Peer Review #1 of "Epigenetic considerations in aquaculture (v0.1)"

(2017) · PeerJ · doi:10.7287/peerj.4147v0.1/reviews/1

Glucose signal transduction and the role of the HD2 family of histone deacetylases in Arabidopsis seedling gerination and development

Alhattab, R. (2010) · doi:10.22215/etd/2010-09011

Regulation of gene expression over cycles of torpor-arousal in thirteen-lined ground squirrels

Tessier, S. N. (2014) · Carleton University's Institutional Repository (MacOdrum Library, Carleton University) · doi:10.22215/etd/2014-10427

Chromatin Remodeling

(2004) · Encyclopedic Dictionary of Genetics, Genomics and Proteomics · doi:10.1002/0471684228.egp02219

Index

Lockman, J. J., & Tamis‐LeMonda, C. S. (2020) · Cambridge University Press eBooks · doi:10.1017/9781108351959.030

Epigenetics

Treviño, L. S., & Walker, C. L. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-801238-3.95610-1

Transcriptional regulation in the hibernating thirteen-lined ground squirrel, Spermophilus tridecemlineatus

Morin, P. (2006) · Carleton University's Institutional Repository (MacOdrum Library, Carleton University) · doi:10.22215/etd/2006-06273

Recent Advance of Histone Modification in Gastric Cancer : A Review

Shekh, A. S., Mangate, K. S., Khedekar, N. D., Ayaz, M. A. M., & Biyani, K. R. (2022) · International Journal of Advanced Research in Science Communication and Technology · doi:10.48175/ijarsct-7018

Epigenetic targeted therapies in hematological malignancies

Venney, D., Greenfield, G., Preston, P., Mohd-Sarip, A., & Mills, K. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-91367-6.00017-9

The Epigenetic Impact of the Human Microbiota on Host Cells

Stein, R. A., Cui, R., Faussete, K. C., & Riber, L. (2024) · Springer eBooks · doi:10.1007/978-981-97-3790-1_5

Epigenetics

Filipowicz, A. R., Chen, Q., & Allard, P. (2024) · Elsevier eBooks · doi:10.1016/b978-0-323-95488-4.00139-x

Role of Epigenetics in Fisheries and Aquaculture

Fatima, J., & Siddique, Y. H. (2025) · Springer eBooks · doi:10.1007/978-3-031-92858-1_21

Chromatin signalling pathways and FANCE amplification affect ATR inhibitor sensitivity in metastatic breast cancerPreprint

Selvarajah, J., Fernandes, R. C., Lorentzen, M. P., Pei, E., Greenland, K. K., Kozik, Z., Choudhary, J. S., & Bevan, C. L. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.08.26.672363

Influence of Environmental Factors on Epigenetic – A Review

Anupama, U., Arora, H., & Mahna, D. (2025) · Springer proceedings in earth and environmental sciences · doi:10.1007/978-3-031-93444-5_60

Roles as Ultradian Oscillators of the Cells Biological Clock

Morré, D. J., & Morré, D. M. (2012) · Springer eBooks · doi:10.1007/978-1-4614-3958-5_6

Epigenetic gene regulation in multiple myeloma and mood disorders

Kalushkova, A. (2013) · KTH Publication Database DiVA (KTH Royal Institute of Technology)

Post-translational regulation of Myc oncoprotein function

Bahram, F. (2004) · Epsilon Open Archive (Sveriges lantbruksuniversitet biblioteket (Swedish University of Agricultural Sciences))

The essential JIL-1 kinase regulates histone H3 phosphorylation and maintains chromatin structure in Drosophila

Zhang, W. (2004) · doi:10.31274/rtd-180813-2110

Regulation of the Epstein-Barr virus C promoter by the OriP-EBNA1 complex

Boreström, C. (2008) · Gothenburg University Publications Electronic Archive (Gothenburg University)

Additional file 1 of Global histone protein surface accessibility in yeast indicates a uniformly loosely packed genome with canonical nucleosomes

Marr, L. T., Ocampo, J., Clark, D. J., & Hayes, J. J. (2021) · Figshare · doi:10.6084/m9.figshare.13560022

MambaHM: High-Resolution Histone Modification Prediction from ATAC-seq and DNA Sequence

Zhang, Z., Jia, L., Xu, Z., He, Z., Wang, Z., & Fan, X. (2025) · IEEE International Conference on Bioinformatics and Biomedicine (BIBM) · doi:10.1109/bibm66473.2025.11356994

Contrôle du métabolisme oxydatif des cellules leucémiques par le microenvironnement médullaire

Vignon, C. (2011) · theses.fr (ABES) · doi:10.70675/46c47371z1ee4z4069zb265z15a0300cc74f

Etude des marqueurs de progression tumorale dans les cancers HPV-induits

Brochot-Dorigny, A. (2013) · theses.fr (ABES) · doi:10.70675/d6643687z76b0z4200zbfb2zfd4986de1fbc

The role of acetylation in the regulation of antimicrobial peptide gene expression in the human intestine

Fischer, N. (2014) · theses.fr (ABES) · doi:10.70675/7ecf88e2z7851z4354zb134z317e666a94cb

Caenorhabditis elegans un modèle d’étude des différents compartiments du noyau : de l’étude d’un stress du nucléole par inhibition de la voie de neddylation à la mesure de la compaction de la chromatine in vivo

Perrin, A. (2018) · theses.fr (ABES) · doi:10.70675/b18d3817z31cfz4b86zb4f4zb933247ec8ef

ChIPmentation-based mapping of histone modifications in aging: Experimental design and analytical considerations

Johna, A., Sreya, S., Sengupta, T., Elumalai, P., Sengupta, A., Kumar, R., & Nishana, M. (2026) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/bs.mie.2026.05.032

A dCas9 proximity reporter for investigating DNA linear and rotational dynamics

Parvez, S., Marsh, M. C., Owen, S. C., & Peterson, R. T. (2026) · PLoS ONE · doi:10.1371/journal.pone.0355748

Genomic Profiling of Chromatin State Using CUT&Tag

Meng, F. W., Nguyen, D. K., & Murphy, P. J. (2026) · Methods in molecular biology · doi:10.1007/978-1-0716-5539-9_16

BindingDB Entry 50022595: Breaching the DNA damage checkpoint via PF-00477736, a novel small-molecule inhibitor of checkpoint kinase 1.

BindingDB (2025) · UC San Diego · doi:10.7270/q2251pxq

BindingDB Entry 50046563: Discovery of 1-hydroxypyridine-2-thiones as selective histone deacetylase inhibitors and their potential application for treating leukemia.

BindingDB (2016) · UC San Diego · doi:10.7270/q2930vzb

BindingDB Entry 50014303: Discovery of a potent and selective inhibitor of histone lysine demethylase KDM4D.

BindingDB (2022) · UC San Diego · doi:10.7270/q24t6p5x

BindingDB Entry 50009023: Discovery and synthesis of novel indole derivatives-containing 3-methylenedihydrofuran-2(3H)-one as irreversible LSD1 inhibitors.

BindingDB (2021) · UC San Diego · doi:10.7270/q2x351w0

Functional studies of RNA polymerase II-dependent transcription in yeast Saccharomyces cerevisiae

Tronnersjö, S. (2006) · Epsilon Open Archive (Sveriges lantbruksuniversitet biblioteket (Swedish University of Agricultural Sciences))

EFEITOS DA HIPERACETILAÇÃO DE HISTONAS NA DIFERENCIAÇÃO IN VITRO DE CÉLULAS TRONCO EMBRIONÁRIAS MURINAS

Oliveira, C. S., & Garcia, J. M. (2009) · Aleph UCLA Undergraduate Research Journal for the Humanities and Social Sciences

STRUCTURAL AND FUNCTIONAL ANALYSIS ON HUMAN INO80 CHROMATIN REMODELING COMPLEXES

Chen, L. (2013) · KU ScholarWorks (The University of Kansas)

Signal transduction from cell surface to nucleus in development and disease

Karin, M. (1992) · The FASEB Journal · doi:10.1096/fasebj.6.8.1317309 · Cited by 243

Transcriptional Regulation by Extracellular signals: Mechanisms and Specificity

Hill, C. S., & Treisman, R. (1995) · Cell · doi:10.1016/0092-8674(95)90403-4 · Cited by 1,012

Signal transduction and gene control

Karin, M. (1991) · Current Opinion in Cell Biology · doi:10.1016/0955-0674(91)90075-a · Cited by 94

Histone Phosphorylation

Lau, P. N. I., & Cheung, P. (2010) · Elsevier eBooks · doi:10.1016/b978-0-12-374145-5.00288-6 · Cited by 3

Signal transduction from the cell surface to the nucleus through the phosphorylation of transcription factors

Karin, M. (1994) · Current Opinion in Cell Biology · doi:10.1016/0955-0674(94)90035-3 · Cited by 389