The DOI matches its Crossref record.
Orthology, paralogy and proposed classification for paralog subtypes
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cited by
Dujon, B., Sherman, D., Fischer, G., Durrens, P., Casaregola, S., Lafontaine, I., de Montigny, J., Marck, C., Neuvéglise, C., Talla, E., et al. (2004) · Nature · doi:10.1038/nature02579 · Cited by 1,623
Orthologs, Paralogs, and Evolutionary Genomics
Koonin, E. V. (2005) · Annual Review of Genetics · doi:10.1146/annurev.genet.39.073003.114725 · Cited by 1,323
Self-citationComparative genomics, minimal gene-sets and the last universal common ancestor
Koonin, E. V. (2003) · Nature Reviews Microbiology · doi:10.1038/nrmicro751 · Cited by 661
Self-citationFunctional and evolutionary implications of gene orthology
Gabaldón, T., & Koonin, E. V. (2013) · Nature Reviews Genetics · doi:10.1038/nrg3456 · Cited by 643
Self-citationInParanoid 7: new algorithms and tools for eukaryotic orthology analysis
Ostlund, G., Schmitt, T., Forslund, K., Kostler, T., Messina, D. N., Roopra, S., Frings, O., & Sonnhammer, E. L. L. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkp931 · Cited by 623
Self-citationPatterns of Positive Selection in Six Mammalian Genomes
Kosiol, C., Vinař, T., da Fonseca, R. R., Hubisz, M. J., Bustamante, C. D., Nielsen, R., & Siepel, A. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000144 · Cited by 576
eggNOG: automated construction and annotation of orthologous groups of genes
Jensen, L. J., Julien, P., Kuhn, M., von Mering, C., Muller, J., Doerks, T., & Bork, P. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm796 · Cited by 547
A Post-Synaptic Scaffold at the Origin of the Animal Kingdom
Sakarya, O., Armstrong, K. A., Adamska, M., Adamski, M., Wang, I.-F., Tidor, B., Degnan, B. M., Oakley, T. H., & Kosik, K. S. (2007) · PLoS ONE · doi:10.1371/journal.pone.0000506 · Cited by 291
“For each lineage, the dataset was enlarged, when possible, by the inclusion of co-orthologs [27] which are two or more genes in one lineage that are, collectively, orthologous to one or more genes in another lineage due to lineage specific duplications.”
MethodGene Expression Intensity Shapes Evolutionary Rates of the Proteins Encoded by the Vertebrate Genome
Subramanian, S., & Kumar, S. (2004) · Genetics · doi:10.1534/genetics.104.028944 · Cited by 250
McSteen, P., Malcomber, S., Skirpan, A., Lunde, C., Wu, X., Kellogg, E., & Hake, S. (2007) · Plant Physiology · doi:10.1104/pp.107.098558 · Cited by 186
Orthology prediction methods: A quality assessment using curated protein families
Trachana, K., Larsson, T. A., Powell, S., Chen, W., Doerks, T., Muller, J., & Bork, P. (2011) · BioEssays · doi:10.1002/bies.201100062 · Cited by 139
Rens, W., O'Brien, P. C., Grützner, F., Clarke, O., Graphodatskaya, D., Tsend-Ayush, E., Trifonov, V. A., Skelton, H., Wallis, M. C., Johnston, S., et al. (2007) · Genome Biology · doi:10.1186/gb-2007-8-11-r243 · Cited by 112
Cicconardi, F., Milanetti, E., Pinheiro de Castro, E. C., Mazo-Vargas, A., Van Belleghem, S. M., Ruggieri, A. A., Rastas, P., Hanly, J., Evans, E., Jiggins, C. D., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-41412-5 · Cited by 81
Goodstadt, L., Heger, A., Webber, C., & Ponting, C. P. (2007) · Genome Research · doi:10.1101/gr.6093907 · Cited by 67
Lineage-specific expansions provide genomic complexity among sea urchin GTPases
Beane, W. S., Voronina, E., Wessel, G. M., & McClay, D. R. (2006) · Developmental Biology · doi:10.1016/j.ydbio.2006.08.046 · Cited by 10
Metadata
- Authors
- Sonnhammer, E. L. L., & Koonin, E. V.
- Venue
- Trends in Genetics
- Publisher
- Elsevier BV
- Published
- 2002-12
- Volume
- 18
- Issue
- 12
- Pages
- 619-620
- ISSN
- 0168-9525 (ISSN-L)
- OpenAlex
- W2010562878
- Cited by
- 379
- References
- 0
- FWCI
- 5.40
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
