Development of Selective Covalent Janus Kinase 3 Inhibitors
Open accessAbstract
The Janus kinases (JAKs) and their downstream effectors, signal transducer and activator of transcription proteins (STATs), form a critical immune cell signaling circuit, which is of fundamental importance in innate immunity, inflammation, and hematopoiesis, and dysregulation is frequently observed in immune disease and cancer. The high degree of structural conservation of the JAK ATP binding pockets has posed a considerable challenge to medicinal chemists seeking to develop highly selective inhibitors as pharmacological probes and as clinical drugs. Here we report the discovery and optimization of 2,4-substituted pyrimidines as covalent JAK3 inhibitors that exploit a unique cysteine (Cys909) residue in JAK3. Investigation of structure-activity relationship (SAR) utilizing biochemical and transformed Ba/F3 cellular assays resulted in identification of potent and selective inhibitors such as compounds 9 and 45. A 2.9 Å cocrystal structure of JAK3 in complex with 9 confirms the covalent interaction. Compound 9 exhibited decent pharmacokinetic properties and is suitable for use in vivo. These inhibitors provide a set of useful tools to pharmacologically interrogate JAK3-dependent biology.
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The shared features of JAK3 and mutant EGFR(T790M) enabled discovery of potent JAK3-selective covalent inhibitors starting from an EGFR inhibitor.
“These shared features enabled the discovery of potent JAK3-selective covalent inhibitors using an EGFR inhibitor as a starting point”
From Advances in covalent drug discovery (2022) · cites this paper as [79]
Covalent targeting of JAK3 Cys909 yields inhibitors selective for JAK3 over other JAK family members for autoimmune diseases.
“Covalent targeting of the non-conserved Cys909 of JAK3 has yielded inhibitors selective for JAK3 over other JAK family members for the treatment of autoimmune diseases77–81.”
From Advances in covalent drug discovery (2022) · cites this paper as [79]
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- Authors
- Tan, L., Akahane, K., McNally, R., Reyskens, K. M. S. E., Ficarro, S. B., Liu, S., Herter-Sprie, G. S., Koyama, S., Pattison, M. J., Labella, K., Johannessen, L., Akbay, E. A., Wong, K.-K., Frank, D. A., Marto, J. A., Look, T. A., Arthur, J. S. C., Eck, M. J., & Gray, N. S.
- Affiliations
- Harvard University (US)
- University of Dundee (GB)
- Corresponding author
- Gray, Nathanael S.
- ORCID
- Venue
- Journal of Medicinal Chemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 2015-08-18
- Volume
- 58
- Issue
- 16
- Pages
- 6589-6606
- ISSN
- 0022-2623 (ISSN-L)
- 1520-4804
- PMC
- PMC4777322
- OpenAlex
- W2227715305
- Cited by
- 122
- References
- 78
- Citations by year
- 2026: 9 · 2025: 8 · 2024: 11 · 2023: 13 · 2022: 13 · 2021: 9 · 2020: 12 · 2019: 8 · 2018: 8 · 2017: 14 · 2016: 16 · 2015: 1
- FWCI
- 6.26
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Journal of Medicinal Chemistry (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
- Discovery Research Portal (University of Dundee) (submittedVersion)
- Funders
- Deutsche Forschungsgemeinschaft (HE 6897/1-1)
- Topics
- Health Sciences › Medicine › Oncology › Cytokine Signaling Pathways and Interactions
- Physical Sciences › Chemistry › Organic Chemistry › Synthesis and biological activity
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Tyrosine Phosphatases
- Keywords
- JAK3, JAK3 inhibitors, covalent inhibitors, STAT signaling, structure-activity relationship, Ba/F3 cells, co-crystal structure, pharmacokinetics, immune cell signaling, inflammation, hematopoiesis
- MeSH terms
- Animals, Antineoplastic Agents, Biological Availability, Cell Survival, Humans, Male, Models, Molecular, Structure-Activity Relationship, Xenograft Model Antitumor Assays, Cell Line, Tumor, Protein Kinase Inhibitors, Mice, Janus Kinase 3
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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