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Protac-Induced Protein Degradation in Drug Discovery: Breaking the Rules or Just Making New Ones?
Abstract
Targeted protein degradation, using bifunctional small molecules (Protacs) to remove specific proteins from within cells, has emerged as a novel drug discovery strategy with the potential to offer therapeutic interventions not achievable with existing approaches. In this Perspective, the brief history of the field is surveyed from a drug discovery perspective with a focus on the key advances in knowledge which have led to the definition and exemplification of protein degradation concepts and their resulting applications to medicine discovery. The approach has the potential to bring disruptive change to drug discovery; the many potential advantages and outstanding challenges which lie ahead of this technology are discussed.
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“and can have a duration of action that extends beyond clearance and depends on the turnover rate of the protein target rather than residence time 23,24,25 .”
From Targeted protein degradation: expanding the toolbox (2019) · cites this paper as [24]
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“A paradigm shift in MDM2 targeting has emerged with PROTAC-based agents such as KT-253 [32], which combines an MDM2-binding warhead with an E3 ligase recruiter (i.e., CRBN) to induce proteasomal degradation of MDM2.”
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“In addition, we did not want to limit ourselves to the usual established drug target classes, as recent developments like proteolysis targeting chimeras and molecular glues are gradually increasing the playing field for targets with therapeutic potential (30).”
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“Furthermore, upon binding of PROTAC to HDAC and an E3 ligase, HDAC protein is ubiquitinated and degraded by the UPS (Churcher, 2018; Lai & Crews, 2017; Schapira et al., 2019).”
BackgroundDiscovery of LHF418 as a new potent SOS1 PROTAC degrader
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“41], As P1 and P3 were designed to recruit two different E3 ligases by linking CsA to pomalidomide and VHL ligand, respectively, we investigated whether mixing P3 and P1 at 50 nM of each would cause a synergetic effect.”
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Solid‐Phase Synthesis of PROTACs and SNIPERs on Backbone Amide Linked (BAL) Resin
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“In recent years, targeted protein degradation (TPD) has become a novel therapeutic modality [6].”
BackgroundAmide-to-ester substitution as a strategy for optimizing PROTAC permeability and cellular activityPreprint
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“Recent advances in Proteolysis Targeting Chimeras (PROTACs) and selective inhibitors of co-regulators (e.g., CBP/p300, BET proteins) may offer avenues to destabilize MYB-driven transcriptional programs [44].”
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“PROTACs are heterobifunctional molecules composed of two linked ligands: one that binds to the protein of interest and another one that binds to a ubiquitin E3 ligase [10].”
BackgroundBRDT Inhibitors for Male Contraceptive Drug Discovery: Current Status
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“Similar to PROTACs, classic lysosomal degraders can employ heterobi-functional designs but recruit lysosomal receptors or autophagy components instead of E3 ligases [132,134].”
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Back to the Medicinal Chemistry Future
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“Selectivity, longer-acting activity, and less off-target side effects of this technology in comparison with the traditional inhibition of proteins make it a promising approach to drug discovery (19).”
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Loy, C. A., Harris, T., & Trader, D. J. (2025) · Current Protocols · doi:10.1002/cpz1.70196 · Cited by 2
“Protein degraders improve upon traditional small molecule inhibition of a protein by exerting prolonged degradation of the targeted proteins and evolution of resistance can be less prominent (Churcher, 2018).”
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Loss of Brd4 alleviates pathological bone loss via Slc9b2 suppression in osteoclastogenesis
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“51 Therefore, dBET6@PSLs were successfully constructed to improve their short half-life in circulation and enhance retention at the disease site.”
Bioorthogonal Chemistry: An Emerging Strategy for Targeted Protein Degradation
Zhou, P., Li, J., Xu, J., Ren, Y., & Xu, S. (2025) · Chemistry - A European Journal · doi:10.1002/chem.202502876 · Cited by 2
BacPROTAC-induced protein degradation as a new antibiotic concept
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“…peptides, millamolecular chemistry (millamolecular chemistry refers to macrocycles with a molecular weight between 500 and 1,000 daltons), PROTACs (Churcher 2017)] to molecular entities grouped under the name “biologics,” such as antibodies, antibody-drug conjugates, peptides, and…”
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Metadata
- Authors
- Churcher, I.
- Affiliations
- BenevolentBio, 40 Churchway, London NW1 1LW, U.K.
- Corresponding author
- Churcher, Ian
- ORCID
- Churcher, Ian
- Venue
- Journal of Medicinal Chemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 2017-12-19
- Volume
- 61
- Issue
- 2
- Pages
- 444-452
- ISSN
- 0022-2623 (ISSN-L)
- 1520-4804
- OpenAlex
- W2769590617
- Cited by
- 491
- References
- 67
- Citations by year
- 2026: 45 · 2025: 61 · 2024: 49 · 2023: 56 · 2022: 53 · 2021: 54 · 2020: 84 · 2019: 64 · 2018: 22 · 2017: 1
- FWCI
- 4.43
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Journal of Medicinal Chemistry (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Degradation and Inhibitors
- Physical Sciences › Chemistry › Organic Chemistry › Chemical Synthesis and Analysis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Keywords
- targeted protein degradation, PROTACs, bifunctional small molecules, protein degradation, drug discovery
- MeSH terms
- Humans, Peptides, Recombinant Proteins, Drug Design, Ubiquitin-Protein Ligases, Small Molecule Libraries, Ubiquitination, Drug Discovery, Molecular Targeted Therapy, Proteolysis
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