The DOI matches its Crossref record; 25 of the 25 references it cites were found in a registry or an index.
Insertion of nucleotides opposite apurinic apyrimidinic sites in deoxyribonucleic acid during in vitro synthesis: uniqueness of adenine nucleotides
Abstract
M13 DNA containing 20-30 apurinic/apyrimidinic (AP) sites per intact circular molecule was prepared by growing phage on an ung- dut- Escherichia coli mutant and treating the DNA with uracil N-glycosylase. AP sites obstruct in vitro DNA synthesis catalyzed by E. coli pol I. The position at which termination of synthesis occurs was determined for four enzymes. T4 DNA polymerase terminates one nucleotide before putative AP sites. DNA pol I, AMV reverse transcriptase, and DNA polymerase alpha terminate synthesis either before or at the site of an AP lesion depending on the particular sequence. We determined the identity of the nucleotide inserted opposite an AP site by synthesizing up to the lesion in a first-stage reaction using T4 DNA polymerase and then determining elongation in a second stage. Purines are inserted opposite AP sites more readily than pyrimidines, and dATP is more efficient than dGTP in promoting such elongation. The DNA-dependent conversion of dNTP to dNMP was determined in mixtures of all four dNTP's by using AP DNA. The production of dAMP from dATP occurs most readily. We conclude that there is an inherent specificity for the incorporation of adenine nucleotides opposite AP sites in this in vitro system. Insofar as the model system reflects in vivo mutational events, our data suggest that depurination should produce transversions and depyrimidination should produce transitions.
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Cites
DNA sequencing with chain-terminating inhibitors
Sanger, F., Nicklen, S., & Coulson, A. R. (1977) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.74.12.5463 · Cited by 68,572
McDonell, M. W., Simon, M. N., & Studier, F. W. (1977) · Journal of Molecular Biology · doi:10.1016/s0022-2836(77)80102-2 · Cited by 1,585
Rate of depurination of native deoxyribonucleic acid
Lindahl, T., & Nyberg, B. (1972) · Biochemistry · doi:10.1021/bi00769a018 · Cited by 1,556
Lindahl, T. (1982) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.51.070182.000425 · Cited by 895
Messing, J. W., Gronenborn, B., Müller‐Hill, B., & Hopschneider, P. H. (1977) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.74.9.3642 · Cited by 705
Rate of chain breakage at apurinic sites in double-stranded deoxyribonucleic acid
Lindahl, T., & Andersson, A. (1972) · Biochemistry · doi:10.1021/bi00769a019 · Cited by 591
Infidelity of DNA synthesis associated with bypass of apurinic sites.
Schaaper, R. M., Kunkel, T. A., & Loeb, L. A. (1983) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.80.2.487 · Cited by 305
Base substitution mutations induced by metabolically activated aflatoxin B1.
Foster, P. L., Eisenstadt, E., & Miller, J. H. (1983) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.80.9.2695 · Cited by 274
Depurination causes mutations in SOS-induced cells.
Schaaper, R. M., & Loeb, L. A. (1981) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.78.3.1773 · Cited by 186
Eisenstadt, E., Warren, A. J., Porter, J., Atkins, D., & Miller, J. H. (1982) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.79.6.1945 · Cited by 181
Sites of inhibition of in vitro DNA synthesis in carcinogen- and UV-treated Φ174 DNA
MOORE, P., & STRAUSS, B. S. (1979) · Nature · doi:10.1038/278664a0 · Cited by 180
Self-citationSome physical-chemical and biological properties of the rod-shaped coliphage M13
Salivar, W. O., Tzagoloff, H., & Pratt, D. (1964) · Virology · doi:10.1016/0042-6822(64)90173-4 · Cited by 171
Moore, P. D., Bose, K. K., Rabkin, S. D., & Strauss, B. S. (1981) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.78.1.110 · Cited by 170
Self-citationFersht, A. R. (1979) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.76.10.4946 · Cited by 163
The role of DNA polymerase in base substitution mutagenesis on non-instructional templates
Strauss, B., Rabkin, S., Sagher, D., & Moore, P. (1982) · Biochimie · doi:10.1016/s0300-9084(82)80138-7 · Cited by 161
Self-citationTye, B., Chien, J. R., Lehman, I., Duncan, B. K., & Warner, H. R. (1978) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.75.1.233 · Cited by 153
Boiteux, S., & Laval, J. (1982) · Biochemistry · doi:10.1021/bi00269a020 · Cited by 143
Hershfield, M. S., & Nossal, N. G. (1972) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)45153-3 · Cited by 104
The 3′-terminal nucleotide sequences of T7 DNA
Englund, P. T. (1972) · Journal of Molecular Biology · doi:10.1016/0022-2836(72)90474-3 · Cited by 88
Gillin, F. D., & Nossal, N. G. (1976) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)33149-6 · Cited by 85
Rabkin, S. D., Moore, P. D., & Strauss, B. S. (1983) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.80.6.1541 · Cited by 66
Self-citationMutagenesis in vitro by depurination of ΦX174 DNA
Kunkel, T. A., Shearman, C. W., & Loeb, L. A. (1981) · Nature · doi:10.1038/291349a0 · Cited by 59
Effect of acetylated and deacetylated 2-aminofluorene adducts on in vitro DNA synthesis.
Moore, P. D., Rabkin, S. D., Osborn, A. L., King, C. M., & Strauss, B. S. (1982) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.79.23.7166 · Cited by 53
Self-citationTermination of in vitro DNA synthesis at AAF adducts in the DNA
Moore, P. D., Rabkin, S. D., & Strauss, B. S. (1980) · Nucleic Acids Research · doi:10.1093/nar/8.19.4473 · Cited by 40
Self-citationBose, K., Tatsumi, K., & Strauss, B. S. (1980) · Biochemistry · doi:10.1021/bi00562a007 · Cited by 30
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Cheng, K. C., Cahill, D. S., Kasai, H., Nishimura, S., & Loeb, L. A. (1992) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)48474-8 · Cited by 1,844
Reactions of oxyl radicals with DNA
Breen, A. P., & Murphy, J. A. (1995) · Free Radical Biology and Medicine · doi:10.1016/0891-5849(94)00209-3 · Cited by 1,038
MUTAGENESIS BY APURINIC/APYRIMIDINIC SITES
Loeb, L. A., & Preston, B. D. (1986) · Annual Review of Genetics · doi:10.1146/annurev.ge.20.120186.001221 · Cited by 901
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Heilbronn, L. K., & Ravussin, E. (2003) · The American Journal of Clinical Nutrition · doi:10.1093/ajcn/78.3.361 · Cited by 701
Aguilar, F., Hussain, S. P., & Cerutti, P. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.18.8586 · Cited by 489
Metadata
- Authors
- Sagher, D., & Strauss, B.
- Venue
- Biochemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 1983-09-13
- Volume
- 22
- Issue
- 19
- Pages
- 4518-4526
- ISSN
- 0006-2960 (ISSN-L)
- 1520-4995
- OpenAlex
- W2092864864
- Cited by
- 320
- References
- 25
- FWCI
- 5.06
- Type
- journal article
- Language
- en
- Open access
- closed
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