Construction and Characterization of Structure Models of Crystalline Porous Polymers
Abstract
Metal–organic frameworks (MOFs) and covalent organic frameworks (COFs) are examples of advanced porous polymeric materials that have emerged in recent years. Their crystalline structure and modular synthesis offer unmatched versatility in their design. By exchanging chemical building blocks, one can both explore the unlimited space of possible structural chemistry within an isoreticular (same crystal topology) series and achieve a wide range of alternative topologies. This reticular paradigm potentially enables the design of structures with any desired porosity and internal surface chemistry. Reliable structure models are typically required in order to predict material properties using a broad spectrum of molecular modeling techniques. In this work, we introduce an algorithm for the assembly of crystalline porous polymer structure models which permits precise control over the underlying topologies of the generated models. This tool has been applied to high-throughput combinatorial structure enumeration and optimization-based automated design. Here, we demonstrate applications of this tool in crystal structure modeling tasks for both MOFs and COFs. Our algorithm is made available within our open source Zeo++ software suite.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Combinatorial enumeration with small changes in linker chemistry and metal SBUs can result in large data sets of 100k or more MOFs, although how well such sets represent the diversity of synthetically accessible materials has been questioned.
“Combinatorial enumeration with small changes in linker chemistry (e.g., functional groups) and metal SBUs can result in large data sets of 100k or more MOFs (27,28,38,39), although how well such sets represent the diversity of synthetically accessible materials has been questioned (40)”
From Machine Learning for the Discovery, Design, and Engineering of Materials. (2022) · cites this paper as [39]
Demonstrations have included the screening of the more than 13k MOFs in the ToBaCCo set for hydrogen storage or other similarly large MOF sets for methane storage.
“Demonstrations have included the screening of the more than 13k MOFs in the ToBaCCo set (28) for hydrogen storage (47) or other similarly large MOF sets for methane storage (39, 48).”
From Machine Learning for the Discovery, Design, and Engineering of Materials. (2022) · cites this paper as [39]
Cites
Reticular synthesis and the design of new materials
Yaghi, O. M., O’Keeffe, M., Ockwig, N. W., Chae, H. K., Eddaoudi, M., & Kim, J. (2003) · Nature · doi:10.1038/nature01650 · Cited by 9,144 · see citing works
Metal-organic framework materials as catalysts
Lee, J., Farha, O. K., Roberts, J., Scheidt, K. A., Nguyen, S. T., & Hupp, J. T. (2009) · Chemical Society Reviews · doi:10.1039/b807080f · Cited by 7,969 · see citing works
Introduction to Metal–Organic Frameworks
Zhou, H.-C. “., Long, J. R., & Yaghi, O. M. (2012) · Chemical Reviews · doi:10.1021/cr300014x · Cited by 7,754 · see citing works
Exceptional chemical and thermal stability of zeolitic imidazolate frameworks
Park, K. S., Ni, Z., Côté, A. P., Choi, J. Y., Huang, R., Uribe‐Romo, F. J., Chae, H. K., O’Keeffe, M., & Yaghi, O. M. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0602439103 · Cited by 7,598 · see citing works
Metal–Organic Framework Materials as Chemical Sensors
Kreno, L. E., Leong, K., Farha, O. K., Allendorf, M. D., Duyne, R. P. V., & Hupp, J. T. (2011) · Chemical Reviews · doi:10.1021/cr200324t · Cited by 7,155 · see citing works
Carbon Dioxide Capture in Metal–Organic Frameworks
Sumida, K., Rogow, D. L., Mason, J. A., McDonald, T. M., Bloch, E. D., Herm, Z. R., Bae, T., & Long, J. R. (2011) · Chemical Reviews · doi:10.1021/cr2003272 · Cited by 6,425 · see citing works
Metal–Organic Frameworks for Separations
Li, J.-R., Sculley, J., & Zhou, H.-C. (2012) · Chemical Reviews · doi:10.1021/cr200190s · Cited by 6,323 · see citing works
A Chemically Functionalizable Nanoporous Material [Cu 3 (TMA) 2 (H 2 O) 3 ] n
Chui, S. S.-Y., Lo, S. M. F., Charmant, J. P. H., Orpen, A. G., & Williams, I. D. (1999) · Science · doi:10.1126/science.283.5405.1148 · Cited by 6,071 · see citing works
Metal–Organic Frameworks in Biomedicine
Horcajada, P., Gref, R., Baâti, T., Allan, P. K., Maurin, G., Couvreur, P., Férey, G., Morris, R. E., & Serre, C. (2011) · Chemical Reviews · doi:10.1021/cr200256v · Cited by 4,175 · see citing works
Hydrogen Storage in Metal–Organic Frameworks
Suh, M. P., Park, H. J., Prasad, T. K., & Lim, D. (2011) · Chemical Reviews · doi:10.1021/cr200274s · Cited by 3,709 · see citing works
Feng, X., Ding, X., & Jiang, D. (2012) · Chemical Society Reviews · doi:10.1039/c2cs35157a · Cited by 3,105 · see citing works
A route to high surface area, porosity and inclusion of large molecules in crystals
Materials Design and Discovery Group, Chae, H. K., Siberio-Pérez, D. Y., Kim, J., Go, Y., Eddaoudi, M., Matzger, A. J., O’Keeffe, M., & Yaghi, O. M. (2004) · Nature · doi:10.1038/nature02311 · Cited by 2,817 · see citing works
The Reticular Chemistry Structure Resource (RCSR) Database of, and Symbols for, Crystal Nets
O’Keeffe, M., Peskov, M. V., Ramsden, S. J., & Yaghi, O. M. (2008) · Accounts of Chemical Research · doi:10.1021/ar800124u · Cited by 2,316 · see citing works
Reticular Chemistry: Occurrence and Taxonomy of Nets and Grammar for the Design of Frameworks
Ockwig, N. W., Delgado‐Friedrichs, O., O’Keeffe, M., & Yaghi, O. M. (2005) · Accounts of Chemical Research · doi:10.1021/ar020022l · Cited by 2,197 · see citing works
O'Keeffe, M., & Yaghi, O. M. (2011) · Chemical Reviews · doi:10.1021/cr200205j · Cited by 2,157 · see citing works
Metal–Organic Framework Materials with Ultrahigh Surface Areas: Is the Sky the Limit?
Farha, O. K., Eryazici, I., Jeong, N. C., Hauser, B. G., Wilmer, C. E., Sarjeant, A. A. N., Snurr, R. Q., Nguyen, S. T., Yazaydın, A. Ö., & Hupp, J. T. (2012) · Journal of the American Chemical Society · doi:10.1021/ja3055639 · Cited by 1,968 · see citing works
Algorithms and tools for high-throughput geometry-based analysis of crystalline porous materials
Willems, T., Rycroft, C. H., Kazi, M., Meza, J. C., & Harańczyk, M. (2011) · Microporous and Mesoporous Materials · doi:10.1016/j.micromeso.2011.08.020 · Cited by 1,935 · see citing works
Large-scale screening of hypothetical metal–organic frameworks
Wilmer, C. E., Leaf, M., Lee, C. Y., Farha, O. K., Hauser, B. G., Hupp, J. T., & Snurr, R. Q. (2012) · Nature Chemistry · doi:10.1038/nchem.1192 · Cited by 1,439 · see citing works
Terminology of metal–organic frameworks and coordination polymers (IUPAC Recommendations 2013)
Batten, S. R., Champness, N. R., Chen, X., García‐Martínez, J., Kitagawa, S., Öhrström, L. R., O’Keeffe, M., Suh, M. P., & Reedijk, J. (2013) · Pure and Applied Chemistry · doi:10.1351/pac-rec-12-11-20 · Cited by 1,346 · see citing works
Getman, R. B., Bae, Y., Wilmer, C. E., & Snurr, R. Q. (2011) · Chemical Reviews · doi:10.1021/cr200217c · Cited by 1,199 · see citing works
Li, M., Li, D., O’Keeffe, M., & Yaghi, O. M. (2013) · Chemical Reviews · doi:10.1021/cr400392k · Cited by 1,165 · see citing works
Molecular Simulations of Zeolites: Adsorption, Diffusion, and Shape Selectivity
Smit, B., & Maesen, T. L. M. (2008) · Chemical Reviews · doi:10.1021/cr8002642 · Cited by 832 · see citing works
Yuan, D., Zhao, D., Sun, D., & Zhou, H.-C. “. (2010) · Angewandte Chemie International Edition · doi:10.1002/anie.201001009 · Cited by 755 · see citing works
Separation of Hexane Isomers in a Metal-Organic Framework with Triangular Channels
Herm, Z. R., Wiers, B. M., Mason, J. A., van Baten, J. M., Hudson, M. R., Zajdel, P., Brown, C. M., Masciocchi, N., Krishna, R., & Long, J. R. (2013) · Science · doi:10.1126/science.1234071 · Cited by 709 · see citing works
Alexandrov, E. V., Blatov, V. A., Kochetkov, A. V., & Proserpio, D. M. (2011) · CrystEngComm · doi:10.1039/c0ce00636j · Cited by 709 · see citing works
In silico screening of carbon-capture materials
Lin, L., Berger, A. H., Martin, R. L., Kim, J., Swisher, J. A., Jariwala, K., Rycroft, C. H., Bhown, A. S., Deem, M. W., Harańczyk, M., et al. (2012) · Nature Materials · doi:10.1038/nmat3336 · Cited by 564 · see citing works
Self-citationAn Introduction To Chemoinformatics
Leach, A. R., & Gillet, V. J. (2007) · Springer eBooks · doi:10.1007/978-1-4020-6291-9 · Cited by 535 · see citing works
Mapping of Functional Groups in Metal-Organic Frameworks
Kong, X., Deng, H., Yan, F., Kim, J., Swisher, J. A., Smit, B., Yaghi, O. M., & Reimer, J. A. (2013) · Science · doi:10.1126/science.1238339 · Cited by 499 · see citing works
Eddaoudi, M., Kim, J., Vodak, D. T., Sudik, A. C., Wachter, J., O’Keeffe, M., & Yaghi, O. M. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.082051899 · Cited by 372 · see citing works
Identification of and symmetry computation for crystal nets
Delgado‐Friedrichs, O., & O'Keeffe, M. (2003) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767303012017 · Cited by 348 · see citing works
Addressing Challenges of Identifying Geometrically Diverse Sets of Crystalline Porous Materials
Martin, R. L., Smit, B., & Harańczyk, M. (2011) · Journal of Chemical Information and Modeling · doi:10.1021/ci200386x · Cited by 249 · see citing works
Self-citationTaxonomy of periodic nets and the design of materials
Delgado‐Friedrichs, O., O'Keeffe, M., & Yaghi, O. M. (2007) · Physical Chemistry Chemical Physics · doi:10.1039/b615006c · Cited by 248 · see citing works
Lewis, D. W., Ruiz‐Salvador, A. R., Gómez, A., Rodríguez-Albelo, L. M., Coudert, F., Slater, B., Cheetham, A. K., & Mellot‐Draznieks, C. (2009) · CrystEngComm · doi:10.1039/b912997a · Cited by 247 · see citing works
Characterization and comparison of pore landscapes in crystalline porous materials
Pinheiro, M., Martin, R. L., Rycroft, C. H., Jones, A., Enrique Iglesia, A., & Harańczyk, M. (2013) · Journal of Molecular Graphics and Modelling · doi:10.1016/j.jmgm.2013.05.007 · Cited by 230 · see citing works
Self-citationChae, H. K., Kim, J., Friedrichs, O. D., O’Keeffe, M., & Yaghi, O. M. (2003) · Angewandte Chemie International Edition · doi:10.1002/anie.200351546 · Cited by 205 · see citing works
Martin, R. L., Simon, C. M., Smit, B., & Haranczyk, M. (2014) · Journal of the American Chemical Society · doi:10.1021/ja4123939 · Cited by 170 · see citing works
Self-citationLiquid phase separations by crystalline microporous coordination polymers
Cychosz, K. A., Ahmad, R. M., & Matzger, A. J. (2010) · Chemical Science · doi:10.1039/c0sc00144a · Cited by 165 · see citing works
Molecular simulations in zeolitic process design
Smit, B., & Krishna, R. (2003) · Chemical Engineering Science · doi:10.1016/s0009-2509(02)00580-8 · Cited by 130 · see citing works
Baburin, I. A., Leoni, S., & Seifert, G. (2008) · The Journal of Physical Chemistry B · doi:10.1021/jp801681w · Cited by 105 · see citing works
High accuracy geometric analysis of crystalline porous materials
Pinheiro, M., Martin, R. L., Rycroft, C. H., & Harańczyk, M. (2013) · CrystEngComm · doi:10.1039/c3ce41057a · Cited by 104 · see citing works
Self-citationMartin, R. L., Lin, L., Jariwala, K., Smit, B., & Harańczyk, M. (2013) · The Journal of Physical Chemistry C · doi:10.1021/jp401920y · Cited by 82 · see citing works
Self-citationThree-periodic tilings and nets: face-transitive tilings and edge-transitive nets revisited
Delgado‐Friedrichs, O., & O'Keeffe, M. (2007) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767307022283 · Cited by 76 · see citing works
Exploring frontiers of high surface area metal–organic frameworks
Martin, R. L., & Harańczyk, M. (2013) · Chemical Science · doi:10.1039/c3sc00033h · Cited by 63 · see citing works
Self-citationSarkisov, L. (2012) · The Journal of Physical Chemistry C · doi:10.1021/jp210633w · Cited by 58 · see citing works
Similarity‐Driven Discovery of Zeolite Materials for Adsorption‐Based Separations
Martin, R. L., Willems, T., Lin, L., Kim, J., Swisher, J. A., Smit, B., & Harańczyk, M. (2012) · ChemPhysChem · doi:10.1002/cphc.201200554 · Cited by 46 · see citing works
Self-citationIsohedral simple tilings: binodal and by tiles with ≤16 faces
Delgado‐Friedrichs, O., & O’Keeffe, M. (2005) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767305009578 · Cited by 42 · see citing works
Predicting microporous crystalline polyimides
Trewin, A., & Cooper, A. I. (2009) · CrystEngComm · doi:10.1039/b906280g · Cited by 36 · see citing works
Optimization-Based Design of Metal–Organic Framework Materials
Martin, R. L., & Harańczyk, M. (2013) · Journal of Chemical Theory and Computation · doi:10.1021/ct400255c · Cited by 32 · see citing works
Self-citationDelgado‐Friedrichs, O., & O’Keeffe, M. (2009) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767309026270 · Cited by 25 · see citing works
Insights into Multi-Objective Design of Metal–Organic Frameworks
Martin, R. L., & Harańczyk, M. (2013) · Crystal Growth & Design · doi:10.1021/cg401240f · Cited by 22 · see citing works
Self-citationJones, A., Ostrouchov, C., Harańczyk, M., & Enrique Iglesia, A. (2013) · Microporous and Mesoporous Materials · doi:10.1016/j.micromeso.2013.07.033 · Cited by 20 · see citing works
Simple tilings by polyhedra with five- and six-sided faces
Delgado‐Friedrichs, O., & O'Keeffe, M. (2010) · Acta Crystallographica Section A Foundations of Crystallography · doi:10.1107/s0108767310029363 · Cited by 19 · see citing works
Flagged first, then by citations
1 of the 53 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Structures of Metal–Organic Frameworks with Rod Secondary Building Units
Schoedel, A., Li, M., Li, D., O’Keeffe, M., & Yaghi, O. M. (2016) · Chemical Reviews · doi:10.1021/acs.chemrev.6b00346 · Cited by 911 · see citing works
High-throughput computational screening of metal–organic frameworks
Colón, Y. J., & Snurr, R. Q. (2014) · Chemical Society Reviews · doi:10.1039/c4cs00070f · Cited by 471 · see citing works
The materials genome in action: identifying the performance limits for methane storage
Simon, C. M., Kim, J., Gómez‐Gualdrón, D. A., Camp, J. S., Chung, Y. G., Martin, R. L., Mercado, R., Deem, M. W., Gunter, D., Harańczyk, M., et al. (2015) · Energy & Environmental Science · doi:10.1039/c4ee03515a · Cited by 382 · see citing works
Self-citationNandy, A., Duan, C., Taylor, M. G., Liu, F., Steeves, A. H., & Kulik, H. J. (2021) · Chemical Reviews · doi:10.1021/acs.chemrev.1c00347 · Cited by 358 · see citing works
Evaluating topologically diverse metal–organic frameworks for cryo-adsorbed hydrogen storage
Gómez-Gualdrón, D. A., Colón, Y. J., Zhang, X., Wang, T. C., Chen, Y.-S., Hupp, J. T., Yildirim, T., Farha, O. K., Zhang, J., & Snurr, R. Q. (2016) · Energy & Environmental Science · doi:10.1039/c6ee02104b · Cited by 332 · see citing works
Colón, Y. J., Gómez-Gualdrón, D. A., & Snurr, R. Q. (2017) · Crystal Growth & Design · doi:10.1021/acs.cgd.7b00848 · Cited by 321 · see citing works
Direct Synthesis of a Covalent Triazine‐Based Framework from Aromatic Amides
Yu, S., Mahmood, J., Noh, H., Seo, J., Jung, S., Shin, S., Im, Y., Jeon, I., & Baek, J. (2018) · Angewandte Chemie International Edition · doi:10.1002/anie.201801128 · Cited by 310 · see citing works
Extension of the Universal Force Field to Metal–Organic Frameworks
Addicoat, M. A., Vankova, N., Akter, I. F., & Heine, T. (2014) · Journal of Chemical Theory and Computation · doi:10.1021/ct400952t · Cited by 296 · see citing works
Extension of the Universal Force Field for Metal–Organic Frameworks
Coupry, D. E., Addicoat, M. A., & Heine, T. (2016) · Journal of Chemical Theory and Computation · doi:10.1021/acs.jctc.6b00664 · Cited by 244 · see citing works
Anderson, R., Rodgers, J., Argueta, E., Biong, A., & Gómez‐Gualdrón, D. A. (2018) · Chemistry of Materials · doi:10.1021/acs.chemmater.8b02257 · Cited by 241 · see citing works
Applications of machine learning in metal-organic frameworks
Chong, S., Lee, S., Kim, B., & Kim, J. (2020) · Coordination Chemistry Reviews · doi:10.1016/j.ccr.2020.213487 · Cited by 224 · see citing works
Lee, S., Kim, B., Cho, H., Lee, H., Lee, S. Y., Cho, E. S., & Kim, J. (2021) · ACS Applied Materials & Interfaces · doi:10.1021/acsami.1c02471 · Cited by 213 · see citing works
In Silico Design of 2D and 3D Covalent Organic Frameworks for Methane Storage Applications
Mercado, R., Fu, R.-S., Yakutovich, A. V., Talirz, L., Harańczyk, M., & Smit, B. (2018) · Chemistry of Materials · doi:10.1021/acs.chemmater.8b01425 · Cited by 185 · see citing works
Computational development of the nanoporous materials genome
Boyd, P. G., Lee, Y., & Smit, B. (2017) · Nature Reviews Materials · doi:10.1038/natrevmats.2017.37 · Cited by 180 · see citing works
Martin, R. L., Simon, C. M., Smit, B., & Haranczyk, M. (2014) · Journal of the American Chemical Society · doi:10.1021/ja4123939 · Cited by 170 · see citing works
Self-citationChatGPT Research Group for Optimizing the Crystallinity of MOFs and COFs
Zheng, Z., Zhang, O., Nguyen, H. L., Rampal, N., Alawadhi, A. H., Rong, Z., Head-Gordon, T., Borgs, C., Chayes, J. T., & Yaghi, O. M. (2023) · ACS Central Science · doi:10.1021/acscentsci.3c01087 · Cited by 172 · see citing works
Boyd, P. G., & Woo, T. K. (2016) · CrystEngComm · doi:10.1039/c6ce00407e · Cited by 157 · see citing works
Structural Chemistry of Zeolitic Imidazolate Frameworks
Zheng, Z., Rong, Z., Nguyen, H. L., & Yaghi, O. M. (2023) · Inorganic Chemistry · doi:10.1021/acs.inorgchem.3c02322 · Cited by 155 · see citing works
The Influence of Intrinsic Framework Flexibility on Adsorption in Nanoporous Materials
Witman, M. D., Ling, S., Jawahery, S., Boyd, P. G., Harańczyk, M., Slater, B., & Smit, B. (2017) · Journal of the American Chemical Society · doi:10.1021/jacs.7b01688 · Cited by 132 · see citing works
Proximity Effect in Crystalline Framework Materials: Stacking‐Induced Functionality in MOFs and COFs
Kuc, A. B., Springer, M. A., Batra, K., Juarez‐Mosqueda, R., Wöll, C., & Heine, T. (2020) · Advanced Functional Materials · doi:10.1002/adfm.201908004 · Cited by 124 · see citing works
Increasing topological diversity during computational “synthesis” of porous crystals: how and why
Anderson, R., & Gómez‐Gualdrón, D. A. (2019) · CrystEngComm · doi:10.1039/c8ce01637b · Cited by 118 · see citing works
Bayesian optimization of nanoporous materials
Deshwal, A., Simon, C. M., & Doppa, J. R. (2021) · Molecular Systems Design & Engineering · doi:10.1039/d1me00093d · Cited by 118 · see citing works
Defects and Disorder in Covalent Organic Frameworks for Advanced Applications
Daliran, S., Blanco, M., Dhakshinamoorthy, A., Oveisi, A. R., Alemán, J., & Garcı́a, H. (2023) · Advanced Functional Materials · doi:10.1002/adfm.202312912 · Cited by 116 · see citing works
Zhao, G., Brabson, L. M., Chheda, S. P., Huang, J. H., Kim, H., Liu, K., Mochida, K., Pham, T. D., Prerna, Terrones, G., et al. (2024) · Matter · doi:10.1016/j.matt.2025.102140 · Cited by 108 · see citing works
Witman, M. D., Ling, S., Gładysiak, A., Stylianou, K. C., Smit, B., Slater, B., & Harańczyk, M. (2016) · The Journal of Physical Chemistry C · doi:10.1021/acs.jpcc.6b10363 · Cited by 107 · see citing works
Construction of Porous Aromatic Frameworks with Exceptional Porosity via Building Unit Engineering
Li, M., Ren, H., Sun, F., Tian, Y., Zhu, Y., Li, J., Mu, X., Xu, J., Deng, F., & Zhu, G. (2018) · Advanced Materials · doi:10.1002/adma.201804169 · Cited by 101 · see citing works
Burner, J., Schwiedrzik, L., Krykunov, M., Luo, J., Boyd, P. G., & Woo, T. K. (2020) · The Journal of Physical Chemistry C · doi:10.1021/acs.jpcc.0c06334 · Cited by 96 · see citing works
In silico design and screening of hypothetical MOF-74 analogs and their experimental synthesis
Witman, M. D., Ling, S., Anderson, S. L., Tong, L., Stylianou, K. C., Slater, B., Smit, B., & Harańczyk, M. (2016) · Chemical Science · doi:10.1039/c6sc01477a · Cited by 90 · see citing works
AuToGraFS: Automatic Topological Generator for Framework Structures
Addicoat, M. A., Coupry, D. E., & Heine, T. (2014) · The Journal of Physical Chemistry A · doi:10.1021/jp507643v · Cited by 82 · see citing works
Machine Learning Enabled Tailor-Made Design of Application-Specific Metal–Organic Frameworks
Zhang, X., Zhang, K., & Lee, Y. (2019) · ACS Applied Materials & Interfaces · doi:10.1021/acsami.9b17867 · Cited by 76 · see citing works
Zhang, X., Zhang, K., Yoo, H., & Lee, Y. (2021) · ACS Sustainable Chemistry & Engineering · doi:10.1021/acssuschemeng.0c08806 · Cited by 73 · see citing works
Hai, G., & Wang, H. (2022) · Coordination Chemistry Reviews · doi:10.1016/j.ccr.2022.214670 · Cited by 73 · see citing works
Chiral DHIP- and Pyrrolidine-Based Covalent Organic Frameworks for Asymmetric Catalysis
Zhang, J., Han, X., Wu, X., Liu, Y., & Cui, Y. (2019) · ACS Sustainable Chemistry & Engineering · doi:10.1021/acssuschemeng.8b05887 · Cited by 72 · see citing works
Machine Learning for the Discovery, Design, and Engineering of Materials.
Duan, C., Nandy, A., & Kulik, H. J. (2022) · Annual Review of Chemical and Biomolecular Engineering · doi:10.1146/annurev-chembioeng-092320-120230 · Cited by 69 · see citing works
In Silico Discovery of High Deliverable Capacity Metal–Organic Frameworks
Bao, Y. W., Martin, R. L., Simon, C. M., Harańczyk, M., Smit, B., & Deem, M. W. (2014) · The Journal of Physical Chemistry C · doi:10.1021/jp5123486 · Cited by 68 · see citing works
Self-citationHigh-throughput computational screening of nanoporous materials in targeted applications
Ren, E., Guilbaud, P., & Coudert, F. (2022) · Digital Discovery · doi:10.1039/d2dd00018k · Cited by 66 · see citing works
Taddei, M., & Petit, C. (2021) · Molecular Systems Design & Engineering · doi:10.1039/d1me00085c · Cited by 62 · see citing works
Martin, R. L., Simon, C. M., Medasani, B., Britt, D. K., Smit, B., & Harańczyk, M. (2014) · The Journal of Physical Chemistry C · doi:10.1021/jp507152j · Cited by 60 · see citing works
Self-citationTurcani, L., Tarzia, A., Szczypiński, F., & Jelfs, K. E. (2021) · The Journal of Chemical Physics · doi:10.1063/5.0049708 · Cited by 60 · see citing works
Vos, J. S. D., Borgmans, S., Voort, P. V. D., Rogge, S. M. J., & Speybroeck, V. V. (2023) · Journal of Materials Chemistry A · doi:10.1039/d3ta00470h · Cited by 54 · see citing works
In silico prediction of MOFs with high deliverable capacity or internal surface area
Bao, Y. W., Martin, R. L., Harańczyk, M., & Deem, M. W. (2015) · Physical Chemistry Chemical Physics · doi:10.1039/c5cp00002e · Cited by 48 · see citing works
Self-citationLee, J. S., Vlaisavljevich, B., Britt, D. K., Brown, C. M., Harańczyk, M., Neaton, J. B., Smit, B., Long, J. R., & Queen, W. L. (2015) · Advanced Materials · doi:10.1002/adma.201500966 · Cited by 46 · see citing works
Blatov, V. A., Alexandrov, E. V., & Shevchenko, A. P. (2019) · Elsevier eBooks · doi:10.1016/b978-0-12-409547-2.14576-7 · Cited by 46 · see citing works
Direct Synthesis of a Covalent Triazine‐Based Framework from Aromatic Amides
Yu, S., Mahmood, J., Noh, H., Seo, J., Jung, S., Shin, S., Im, Y., Jeon, I., & Baek, J. (2018) · Angewandte Chemie · doi:10.1002/ange.201801128 · Cited by 44 · see citing works
Fang, S., Zhu, H., Yang, D., Yu, J., Wang, J., & Hu, L. (2023) · Energy · doi:10.1016/j.energy.2023.129837 · Cited by 44 · see citing works
Dantas, S., Sarkisov, L., & Neimark, A. V. (2019) · Journal of the American Chemical Society · doi:10.1021/jacs.9b00906 · Cited by 44 · see citing works
Bureekaew, S., Balwani, V., Amirjalayer, S., & Schmid, R. (2014) · CrystEngComm · doi:10.1039/c4ce01574f · Cited by 35 · see citing works
(INVITED) The quest for high resolution γ-ray scintillators
Dorenbos, P. (2019) · Optical Materials X · doi:10.1016/j.omx.2019.100021 · Cited by 34 · see citing works
Gómez‐Álvarez, P., Hamad, S., Harańczyk, M., Ruiz‐Salvador, A. R., & Calero, S. (2015) · Dalton Transactions · doi:10.1039/c5dt04012d · Cited by 32 · see citing works
Gülbalkan, H. C., Haslak, Z. P., Altıntaş, Ç., Uzun, A., & Keskın, S. (2022) · Separation and Purification Technology · doi:10.1016/j.seppur.2022.120578 · Cited by 31 · see citing works
Preparation of Three‐Dimensional Chitosan–Graphene Oxide Aerogel for Residue Oil Removal
Guo, X., Qu, L., Zhu, S., Tian, M., Zhang, X., Sun, K., & Tang, X. (2016) · Water Environment Research · doi:10.2175/106143016x14609975747207 · Cited by 30 · see citing works
Capture of pure toxic gases through porous materials from molecular simulations
Zhou, X., Su, Z., Chen, H., Xiao, X., Qin, Y.-H., Yang, L., Yan, Z., & Sun, W. (2018) · Molecular Physics · doi:10.1080/00268976.2018.1440019 · Cited by 30 · see citing works
Argueta, E., Shaji, J., Gopalan, A., Liao, P., Snurr, R. Q., & Gómez‐Gualdrón, D. A. (2017) · Journal of Chemical Theory and Computation · doi:10.1021/acs.jctc.7b00841 · Cited by 29 · see citing works
TopoFF: MOF structure prediction using specifically optimized blueprints
Keupp, J., & Schmid, R. (2018) · Faraday Discussions · doi:10.1039/c8fd00051d · Cited by 29 · see citing works
Kim, W., Lee, W., An, H.-E., Furukawa, H., Jeong, W., Kim, S., Long, J. R., Jeong, S., & Lee, J. (2025) · Chemical Engineering Journal · doi:10.1016/j.cej.2025.160766 · Cited by 28 · see citing works
A New Era of Modeling MOF‐Based Membranes: Cooperation of Theory and Data Science
Demir, H., & Keskın, S. (2023) · Macromolecular Materials and Engineering · doi:10.1002/mame.202300225 · Cited by 25 · see citing works
Computational Modeling of Reticular Materials: The Past, the Present, and the Future
Temmerman, W., Goeminne, R., Rawat, K. S., & Speybroeck, V. V. (2024) · Advanced Materials · doi:10.1002/adma.202412005 · Cited by 24 · see citing works
Hong, T. Z. X., Kieu, H. T., You, L., Zheng, H., Law, A. W., & Zhou, K. (2022) · Applied Surface Science · doi:10.1016/j.apsusc.2022.154088 · Cited by 24 · see citing works
Yang, Z., Peh, S. B., Xi, S., Lü, Y., Liu, Q., & Zhao, D. (2025) · Angewandte Chemie International Edition · doi:10.1002/anie.202418098 · Cited by 22 · see citing works
Chen, L., Fang, J., Lin, J., Zhao, M., Liu, Y., Zhou, J., Wu, Y., & Lin, X. (2025) · Materials Futures · doi:10.1088/2752-5724/ade9e3 · Cited by 22 · see citing works
Wu, X., Che, Y., Chen, L., Amigues, E. J., Wang, R., He, J., Dong, H., & Ding, L. (2022) · ACS Applied Materials & Interfaces · doi:10.1021/acsami.2c10861 · Cited by 20 · see citing works
Gao, R., Xu, T., Wang, Z., Ren, H., Zhang, G., Zhao, Y., Tay, A. K. P., & Miao, Y. (2024) · Advanced Functional Materials · doi:10.1002/adfm.202407535 · Cited by 19 · see citing works
Molecular Modeling of Carbon Dioxide Adsorption in Metal-Organic Frameworks
Zhang, H., Bucior, B. J., & Snurr, R. Q. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-805057-6.00004-1 · Cited by 19 · see citing works
Wu, Z., Wei, S., Wang, M., Zhou, S., Wang, J., Wang, Z., Guo, W., & Lü, X. (2018) · Journal of CO2 Utilization · doi:10.1016/j.jcou.2018.09.024 · Cited by 19 · see citing works
Assoualaye, G., & Djongyang, N. (2020) · Polymer Bulletin · doi:10.1007/s00289-020-03350-w · Cited by 18 · see citing works
Automated Virtual Design of Organic Semiconductors Based on Metal-Organic Frameworks
Mostaghimi, M., Rêgo, C. R. C., Haldar, R., Wöll, C., Wenzel, W., & Kozłowska, M. (2022) · Frontiers in Materials · doi:10.3389/fmats.2022.840644 · Cited by 18 · see citing works
Fang, S., Zhu, H., Gao, M., He, X., Liao, Q., & Hu, L. (2022) · Scientific Reports · doi:10.1038/s41598-022-07118-2 · Cited by 17 · see citing works
Maurin, G. (2015) · Comptes Rendus Chimie · doi:10.1016/j.crci.2015.07.013 · Cited by 17 · see citing works
Solanki, V. A., & Borah, B. (2019) · The Journal of Physical Chemistry C · doi:10.1021/acs.jpcc.9b03240 · Cited by 17 · see citing works
Hong, T. Z. X., You, L., Dahanayaka, M., Law, A. W., & Zhou, K. (2021) · Molecules · doi:10.3390/molecules26113392 · Cited by 17 · see citing works
PoreMatMod.jl : Julia Package for in Silico Postsynthetic Modification of Crystal Structure Models
Henle, E. A., Gantzler, N., Thallapally, P. K., Fern, X. Z., & Simon, C. M. (2022) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.1c01219 · Cited by 17 · see citing works
Assoualaye, G., Tom, A., & Djongyang, N. (2020) · SN Applied Sciences · doi:10.1007/s42452-020-03627-9 · Cited by 16 · see citing works
Materials genomics‐guided ab initio screening of MOFs with open copper sites for acetylene storage
Zhang, C., Lan, Y., Guo, X., Yang, Q., & Zhong, C. (2017) · AIChE Journal · doi:10.1002/aic.16025 · Cited by 16 · see citing works
Covalently Linked Organic Networks
Addicoat, M. A., & Tsotsalas, M. M. (2015) · Frontiers in Materials · doi:10.3389/fmats.2015.00007 · Cited by 15 · see citing works
López, M. J., Torres, M. B., & Cabria, I. (2024) · International Journal of Hydrogen Energy · doi:10.1016/j.ijhydene.2024.05.256 · Cited by 13 · see citing works
Solanki, V. A., & Borah, B. (2020) · Molecular Simulation · doi:10.1080/08927022.2020.1822528 · Cited by 13 · see citing works
Liu, X., Wang, M., Zhou, S., Wang, J., Xin, H., Wei, S., Liu, S., Wang, Z., & Lü, X. (2021) · Journal of Materials Science · doi:10.1007/s10853-021-05970-7 · Cited by 13 · see citing works
Stereoactive Electron Lone Pairs Facilitate Fluoride Ion Diffusion in Tetragonal BaSnF 4
Lian, X., Dambournet, D., & Salanne, M. (2024) · Chemistry of Materials · doi:10.1021/acs.chemmater.4c02756 · Cited by 12 · see citing works
Computation-informed optimization of Ni(PyC)2 functionalization for noble gas separations
Gantzler, N., Kim, M., Robinson, A. J., Terban, M. W., Ghose, S., Dinnebier, R. E., York, A. H. P., Tiana, D., Simon, C. M., & Thallapally, P. K. (2022) · Cell Reports Physical Science · doi:10.1016/j.xcrp.2022.101025 · Cited by 12 · see citing works
porE : A code for deterministic and systematic analyses of porosities
Trepte, K., & Schwalbe, S. (2021) · Journal of Computational Chemistry · doi:10.1002/jcc.26484 · Cited by 10 · see citing works
Oliveira, F. L., & Esteves, P. M. (2024) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.3c01918 · Cited by 10 · see citing works
Xue, X., Huang, X., & Wang, G. (2022) · 中国科学通报:英文版 · doi:10.1016/j.scib.2022.05.003 · Cited by 9 · see citing works
Structural determination of covalent organic frameworks through diffraction methods
Lin, E., Wang, Z., & Zhang, Z. (2024) · Journal of Materials Chemistry A · doi:10.1039/d4ta02312a · Cited by 8 · see citing works
Gao, Z., Wang, H., Qu, Z., & Tang, Z. (2025) · Applied Thermal Engineering · doi:10.1016/j.applthermaleng.2025.126333 · Cited by 7 · see citing works
Evaluation and screening of multivariate metal-organic frameworks for hydrogen storage
Xie, Y.-Y., Li, X., Zhang, H., Liu, X., & Wang, J. (2024) · International Journal of Hydrogen Energy · doi:10.1016/j.ijhydene.2024.09.135 · Cited by 5 · see citing works
Role of Molecular Simulations in the Field of MOFs
Maurin, G. (2016) · Wiley-VCH eBooks · doi:10.1002/9783527693078.ch25 · Cited by 4 · see citing works
Ramsahye, N. A., & Maurin, G. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-805057-6.00003-x · Cited by 4 · see citing works
A Molecular Dynamics Study Employing Bimetallic Co–CuHAB Nanosheets for Seawater Desalination
Hong, T. Z. X., Kieu, H. T., You, L., Law, A. W., & Zhou, K. (2023) · ACS ES&T Water · doi:10.1021/acsestwater.3c00072 · Cited by 4 · see citing works
Manurkar, N., Su, H., Arshad, F., Li, Z., & Li, H. (2024) · CrystEngComm · doi:10.1039/d4ce00008k · Cited by 4 · see citing works
The transformative role of machine learning in advancing MOF membranes for gas separations
Sezgin, P., & Keskın, S. (2025) · Chemical Physics Reviews · doi:10.1063/5.0278371 · Cited by 3 · see citing works
Xie, Y.-Y., Li, X., Liu, C., Li, J., Liu, X., & Yu, J.-X. (2025) · Langmuir · doi:10.1021/acs.langmuir.5c03788 · Cited by 3 · see citing works
Hussain, M., Song, X., Zhao, J., Luo, Y., & Hao, C. (2019) · Molecular Simulation · doi:10.1080/08927022.2019.1614178 · Cited by 3 · see citing works
Yang, Z., Peh, S. B., Xi, S., Lü, Y., Liu, Q., & Zhao, D. (2025) · Angewandte Chemie · doi:10.1002/ange.202418098 · Cited by 3 · see citing works
Mudhulu, S., Nath, J., Kuncharam, B. V. R., & Gupta, S. (2026) · Chemical Engineering Journal Green and Sustainable · doi:10.1016/j.cejgas.2026.100025 · Cited by 1 · see citing works
Tailoring ammonia adsorption in UiO-67 via defect and metal site engineering
Wang, G., Wong, K. T., Lu, Y., Huang, Y., Tsang, S. C. E., & Zhao, P. (2026) · ENGINEERING Chemical Engineering · doi:10.1007/s11705-026-2653-7 · Cited by 1 · see citing works
Granja-DelRío, A., & Cabria, I. (2025) · Results in Surfaces and Interfaces · doi:10.1016/j.rsurfi.2025.100442 · Cited by 1 · see citing works
Tang, C., Fu, S., & Liu, F. (2021) · IEEE International Conference on Artificial Intelligence and Industrial Design (AIID) · doi:10.1109/aiid51893.2021.9456565 · Cited by 1 · see citing works
Bennett, S., & Jelfs, K. E. (2023) · doi:10.1002/9781119819783.ch10 · Cited by 1 · see citing works
Zhu, W., He, Y., Tong, M., Lai, X., Liang, S., Wang, X., Li, Y., & Yan, X. (2020) · Chinese Journal of Chemical Engineering · doi:10.1016/j.cjche.2020.10.035
Systematic Analysis of Porosities in Metal-Organic FrameworksPreprint
Trepte, K., & Schwalbe, S. (2020) · ChemRxiv · doi:10.26434/chemrxiv.10060331.v2
- Authors
- Martin, R. L., & Haranczyk, M.
- Affiliations
- Lawrence Berkeley National Laboratory (US)
- Computational Research Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA 94720-8139, United States
- Venue
- Crystal Growth & Design
- Publisher
- American Chemical Society (ACS)
- Published
- 2014-04-02
- Volume
- 14
- Issue
- 5
- Pages
- 2431-2440
- ISSN
- 1528-7483 (ISSN-L)
- 1528-7505
- OpenAlex
- W2335274251
- Cited by
- 116
- References
- 53
- Citations by year
- 2026: 9 · 2025: 9 · 2024: 14 · 2023: 10 · 2022: 12 · 2021: 10 · 2020: 8 · 2019: 8 · 2018: 8 · 2017: 7 · 2016: 8 · 2015: 6 · 2014: 7
- FWCI
- 3.97
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Crystal Growth & Design (publishedVersion)
- Topics
- Physical Sciences › Chemistry › Inorganic Chemistry › Metal-Organic Frameworks: Synthesis and Applications
- Physical Sciences › Materials Science › Materials Chemistry › Covalent Organic Framework Applications
- Physical Sciences › Materials Science › Materials Chemistry › Machine Learning in Materials Science
- Keywords
- metal-organic frameworks, covalent organic frameworks, crystal topology, crystal structure modeling
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review