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Discovery of Potent Nonpeptide Inhibitors of Stromelysin Using SAR by NMR

Hajduk, P. J., Sheppard, G., Nettesheim, D. G., Olejniczak, E. T., Shuker, S. B., Meadows, R. P., Steinman, D. H., Carrera, G. M., Marcotte, P. A., Severin, J., Walter, K., Smith, H., Gubbins, E., Simmer, R., Holzman, T. F., Morgan, D. W., Davidsen, S. K., Summers, J. B., Fesik, S. W.·1997·Journal of the American Chemical Society

Abstract

With the use of an NMR-based method, potent (IC 50 < 25 nM) nonpeptide inhibitors of the matrix metalloproteinase stromelysin (MMP-3) were discovered. The method, called SAR by NMR (for structure−activity relationships by nuclear magnetic resonance), involves the identification, optimization, and linking of compounds that bind to proximal sites on a protein. Using this technique, two ligands that bind weakly to stromelysin (acetohydroxamic acid, K D = 17 mM; 3-(cyanomethyl)-4‘-hydroxybiphenyl, K D = 0.02 mM) were identified. On the basis of NMR-derived structural information, the two fragments were connected to produce a 15 nM inhibitor of this enzyme. This compound was rapidly discovered (less than 6 months) and required only a minimal amount of chemical synthesis. These studies indicate that the SAR by NMR method can be effectively applied to enzymes to yield potent lead inhibitors an important part of the drug discovery process.

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Metadata

Authors
Hajduk, P. J., Sheppard, G., Nettesheim, D. G., Olejniczak, E. T., Shuker, S. B., Meadows, R. P., Steinman, D. H., Carrera, G. M., Marcotte, P. A., Severin, J., Walter, K., Smith, H., Gubbins, E., Simmer, R., Holzman, T. F., Morgan, D. W., Davidsen, S. K., Summers, J. B., & Fesik, S. W.
Venue
Journal of the American Chemical Society
Published
1997-06-01
Volume
119
Issue
25
Pages
5818-5827
ISSN
  • 0002-7863 (ISSN-L)
  • 1520-5126
OpenAlex
W2031609935
Cited by
317
References
22
FWCI
6.15
Type
journal article
Language
en
Open access
closed

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CoChat. (2026). Citation check: Discovery of Potent Nonpeptide Inhibitors of Stromelysin Using SAR by NMR. https://app.cochat.ai/papers/10.1021/ja9702778
The paper
Hajduk, P. J., Sheppard, G., Nettesheim, D. G., Olejniczak, E. T., Shuker, S. B., Meadows, R. P., Steinman, D. H., Carrera, G. M., Marcotte, P. A., Severin, J., Walter, K., Smith, H., Gubbins, E., Simmer, R., Holzman, T. F., Morgan, D. W., Davidsen, S. K., Summers, J. B., & Fesik, S. W. (1997). Discovery of Potent Nonpeptide Inhibitors of Stromelysin Using SAR by NMR. Journal of the American Chemical Society. https://doi.org/10.1021/ja9702778

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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.