TF-DUBTACs Stabilize Tumor Suppressor Transcription Factors
Open accessAbstract
Targeted protein degradation approaches have been widely used for degrading oncogenic proteins, providing a potentially promising therapeutic strategy for cancer treatment. However, approaches to targeting tumor suppressor proteins are very limited, and only a few agonists have been developed to date. Here, we report the development of a platform termed TF-DUBTAC, which links a DNA oligonucleotide to a covalent ligand of the deubiquitinase OTUB1 via a click reaction, to selectively stabilize tumor suppressor transcription factors. We developed three series of TF-DUBTACs, namely, FOXO-DUBTAC, p53-DUBTAC, and IRF-DUBTAC, which stabilize FOXO3A, p53, and IRF3 in cells, respectively, in an OTUB1-dependent manner. These results suggest that TF-DUBTAC is a generalizable platform to achieve selective stabilization of tumor suppressor transcription factors as a therapeutic means to suppress tumorigenesis.
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Compound 233 significantly upregulated FOXO3A in a concentration-dependent manner and selectively stabilized FOXO3A compared with the structurally similar FOX1 within the same family.
“They discovered that compound 233 significantly upregulated FOXO3A in a concentration-dependent manner, exhibiting selective stabilization of FOXO3A compared to the structurally similar FOX1 within the same family (Table 4).”
From Recent advances in targeting the “undruggable” proteins: from drug discovery to clinical trials (2023) · cites this paper as [549]
Wei's team developed a TF-DUBTAC platform capable of selectively stabilizing oncoproteins including FOXO3A, p53, and IRF3.
“Wei’s team developed a TF-DUBTAC platform capable of selectively stabilizing oncoproteins, including FOXO3A, p53, and IRF3.”
From Recent advances in targeting the “undruggable” proteins: from drug discovery to clinical trials (2023) · cites this paper as [549]
Unbiased mass spectrometry analysis revealed that compound 6 efficiently and specifically stabilized FOXO3A while inhibiting Myc expression.
“Unbiased mass spectrometry analysis revealed that compound 6 efficiently and specifically stabilized FOXO3A while inhibiting Myc expression, demonstrating its potential as a promising therapeutic approach.549”
From Recent advances in targeting the “undruggable” proteins: from drug discovery to clinical trials (2023) · cites this paper as [549]
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1 retracted
Morita, K., He, S., Nowak, R. P., Wang, J., Zimmerman, M. W., Fu, C., Durbin, A. D., Martel, M. W., Prutsch, N., Gray, N. S., et al. (2020) · Cell · doi:10.1016/j.cell.2020.03.051 · Cited by 77 · see citing works
RetractedHallmarks of Cancer: The Next Generation
Hanahan, D., & Weinberg, R. A. (2011) · Cell · doi:10.1016/j.cell.2011.02.013 · Cited by 66,590 · see citing works
Akt Promotes Cell Survival by Phosphorylating and Inhibiting a Forkhead Transcription Factor
Brunet, A., Bonni, A., Zigmond, M. J., Lin, M. Z., Juo, P., Hu, L. S., Anderson, M. J., Arden, K. C., Blenis, J., & Greenberg, M. E. (1999) · Cell · doi:10.1016/s0092-8674(00)80595-4 · Cited by 6,535 · see citing works
Improved vectors and genome-wide libraries for CRISPR screening
Sanjana, N. E., Shalem, O., & Zhang, F. (2014) · Nature Methods · doi:10.1038/nmeth.3047 · Cited by 5,239 · see citing works
Cancer genes and the pathways they control
Vogelstein, B., & Kinzler, K. W. (2004) · Nature Medicine · doi:10.1038/nm1087 · Cited by 4,245 · see citing works
Lehmann, J. M., Moore, L. B., Smith-Oliver, T. A., Wilkison, W. O., Willson, T. M., & Kliewer, S. A. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.22.12953 · Cited by 3,626 · see citing works
Breaking the chains: structure and function of the deubiquitinases
Komander, D., Clague, M. J., & Urbé, S. (2009) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2731 · Cited by 2,106 · see citing works
Definition of a consensus binding site for p53
El-Deiry, W. S., Kern, S. E., Pietenpol, J. A., Kinzler, K. W., & Vogelstein, B. (1992) · Nature Genetics · doi:10.1038/ng0492-45 · Cited by 1,985 · see citing works
Vogelstein, B. (1992) · Cell · doi:10.1016/0092-8674(92)90421-8 · Cited by 1,862 · see citing works
Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
Weirauch, M. T., Yang, A. W. H., Albu, M., Coté, A. G., Montenegro‐Montero, A., Drewe, P., Najafabadi, H. S., Lambert, S. A., Mann, I. K., Cook, K. B., et al. (2014) · Cell · doi:10.1016/j.cell.2014.08.009 · Cited by 1,705 · see citing works
Self-citationHonda, K., & Taniguchi, T. (2006) · Nature reviews. Immunology · doi:10.1038/nri1900 · Cited by 1,676 · see citing works
Architecture of the human regulatory network derived from ENCODE data
Gerstein, M., Kundaje, A. B., Hariharan, M., Landt, S. G., Yan, K., Cheng, C., Mu, X. J., Khurana, E., Rozowsky, J. S., Alexander, R. P., et al. (2012) · Nature · doi:10.1038/nature11245 · Cited by 1,418 · see citing works
DNA-Binding Specificities of Human Transcription Factors
Jolma, A., Yan, J., Whitington, T., Toivonen, J., Nitta, K. R., Rastas, P. M. A., Morgunova, E. Y., Enge, M., Taipale, M., Wei, G., et al. (2013) · Cell · doi:10.1016/j.cell.2012.12.009 · Cited by 1,228 · see citing works
Cool, B. L., Zinker, B. A., Chiou, W. J. H., Kifle, L., Cao, N., Perham, M., Dickinson, R., Adler, A. L., Gagné, G. D., Iyengar, R., et al. (2006) · Cell Metabolism · doi:10.1016/j.cmet.2006.05.005 · Cited by 932 · see citing works
IκB Kinase Promotes Tumorigenesis through Inhibition of Forkhead FOXO3a
Hu, M. C.-T., Lee, D.-F., Xia, W., Golfman, L. S., Ou-Yang, F., Yang, J.-Y., Zou, Y., Bao, S., Hanada, N., Saso, H., et al. (2004) · Cell · doi:10.1016/s0092-8674(04)00302-2 · Cited by 868 · see citing works
Acetylation of the p53 DNA-binding domain regulates apoptosis induction.
Sykes, S. M., Mellert, H. S., Holbert, M. A., Li, K., Marmorstein, R., Lane, W. S., & McMahon, S. B. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.11.026 · Cited by 752 · see citing works
Tip60-Dependent Acetylation of p53 Modulates the Decision between Cell-Cycle Arrest and Apoptosis
Tang, Y., Luo, J., Zhang, W., & Gu, W. J. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.11.021 · Cited by 724 · see citing works
Berger, M. F., Philippakis, A., Qureshi, A. M., He, F. S., Estep, P. W., & Bulyk, M. L. (2006) · Nature Biotechnology · doi:10.1038/nbt1246 · Cited by 685 · see citing works
Willson, T. M., Cobb, J. E., Cowan, D. J., Wiethe, R. W., Correa, I. D., Prakash, S. R., Beck, K. D., Moore, L. B., Kliewer, S. A., & Lehmann, J. M. (1996) · Journal of Medicinal Chemistry · doi:10.1021/jm950395a · Cited by 638 · see citing works
An Atomic Model of the Interferon-β Enhanceosome
Panne, D., Maniatis, T., & Harrison, S. C. (2007) · Cell · doi:10.1016/j.cell.2007.05.019 · Cited by 625 · see citing works
Mevissen, T. E. T., Hospenthal, M. K., Geurink, P. P., Elliott, P. R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., Oualid, F. E., et al. (2013) · Cell · doi:10.1016/j.cell.2013.05.046 · Cited by 621 · see citing works
Dijkers, P., Medema, R. H., Pals, C., Banerji, L., Thomas, N., Lam, E., Burgering, B., Raaijmakers, J., Lammers, J.-W. J., Koenderman, L., et al. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.24.9138-9148.2000 · Cited by 621 · see citing works
The DNA-binding domain of p53 contains the four conserved regions and the major mutation hot spots.Preprint
Pavletich, N. P., Chambers, K. A., & Pabo, C. O. (1993) · Genes & Development · doi:10.1101/gad.7.12b.2556 · Cited by 521 · see citing works
Sunters, A., Fernández de Mattos, S., Stahl, M., Brosens, J. J., Zoumpoulidou, G., Saunders, C. A., Coffer, P. J., Medema, R. H., Coombes, R. C., & Lam, E. W.-F. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m309523200 · Cited by 505 · see citing works
Pierrou, S. E., Hellqvist, M., Samuelsson, L., Enerbäck, S., & Carlsson, P. (1994) · The EMBO Journal · doi:10.1002/j.1460-2075.1994.tb06827.x · Cited by 441 · see citing works
Deubiquitinase-targeting chimeras for targeted protein stabilization
Henning, N. J., Boike, L., Spradlin, J. N., Ward, C. C., Liu, G., Zhang, E., Belcher, B. P., Brittain, S. M., Hesse, M. J., Dovala, D., et al. (2022) · Nature Chemical Biology · doi:10.1038/s41589-022-00971-2 · Cited by 344 · see citing works
Cancer Selective Target Degradation by Folate-Caged PROTACs
Liu, J., Chen, H., Liu, Y., Shen, Y., Meng, F., Kanıskan, H. Ü., Jin, J. J., & Wei, W. (2021) · Journal of the American Chemical Society · doi:10.1021/jacs.1c00451 · Cited by 312 · see citing works
Self-citationFOXO3a regulates reactive oxygen metabolism by inhibiting mitochondrial gene expression
Ferber, E. C., Peck, B., Delpuech, O., Bell, G. P., East, P., & Schulze, A. (2011) · Cell Death and Differentiation · doi:10.1038/cdd.2011.179 · Cited by 307 · see citing works
Light-induced control of protein destruction by opto-PROTAC
Liu, J., Chen, H., Ma, L., He, Z., Wang, D., Liu, Y., Lin, Q., Zhang, T., Gray, N. S., Kanıskan, H. Ü., et al. (2020) · Science Advances · doi:10.1126/sciadv.aay5154 · Cited by 305 · see citing works
Self-citationBargonetti, J., Manfredi, J. J., Chen, X., Marshak, D. R., & Prives, C. L. (1993) · Genes & Development · doi:10.1101/gad.7.12b.2565 · Cited by 265 · see citing works
Self-citationThe IRF family of transcription factors: Inception, impact and implications in oncogenesis
Yanai, H., Negishi, H., & Taniguchi, T. (2012) · OncoImmunology · doi:10.4161/onci.22475 · Cited by 261 · see citing works
TF-PROTACs Enable Targeted Degradation of Transcription Factors
Liu, J., Chen, H., Kaniskan, H. Ü., Xie, L., Chen, X., Jin, J., & Wei, W. (2021) · Journal of the American Chemical Society · doi:10.1021/jacs.1c03852 · Cited by 247 · see citing works
Self-citationMyc‐induced proliferation and transformation require Akt‐mediated phosphorylation of FoxO proteins
Bouchard, C., Marquardt, J., Brás, A., Medema, R. H., & Eilers, M. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600279 · Cited by 211 · see citing works
Tsai, K., Sun, Y.-J., Huang, C., Yang, J.-Y., Hung, M., & Hsiao, C. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm703 · Cited by 193 · see citing works
Crystal structure of ATF‐2/c‐Jun and IRF‐3 bound to the interferon‐β enhancer
Panne, D., Maniatis, T., & Harrison, S. (2004) · EMBO Journal · doi:10.1038/sj.emboj.7600453 · Cited by 182 · see citing works
Nikulenkov, F., Spinnler, C., Li, H., Tonelli, C., Shi, Y., Turunen, M. M., Kivioja, T., Ignatiev, I., Kel, A. E., Taipale, J., et al. (2012) · Cell Death and Differentiation · doi:10.1038/cdd.2012.89 · Cited by 178 · see citing works
Momose, Y., Maekawa, T., Yamano, T., et al. (2002) · Journal of Medicinal Chemistry · doi:10.1021/jm010490l · Cited by 162 · see citing works
Interaction of p53 with Its Consensus DNA-Binding Site
Wang, Y., Schwedes, J. F., Parks, D., Mann, K., & Tegtmeyer, P. (1995) · Molecular and Cellular Biology · doi:10.1128/mcb.15.4.2157 · Cited by 149 · see citing works
Kress, T. R., Cannell, I. G., Brenkman, A. B., Samans, B., Gaestel, M., Roepman, P., Burgering, B. M. T., Bushell, M., Rosenwald, A., & Eilers, M. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.01.023 · Cited by 146 · see citing works
Regulation of Xenopus Aurora A Activation by TPX2
Eyers, P. A., & Maller, J. L. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m312424200 · Cited by 133 · see citing works
Thomas, L. R., Adams, C. M., Wang, J., Weissmiller, A. M., Creighton, J. H., Lorey, S. L., Liu, Q., Fesik, S. W., Eischen, C. M., & Tansey, W. P. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1910391116 · Cited by 122 · see citing works
FoxO3A promotes metabolic adaptation to hypoxia by antagonizing Myc function
Jensen, K. S., Binderup, T., Jensen, K. T., Therkelsen, I., Borup, R., Nilsson, E., Multhaupt, H. A. B., Bouchard, C., Quistorff, B., Kjær, A., et al. (2011) · The EMBO Journal · doi:10.1038/emboj.2011.323 · Cited by 121 · see citing works
MYC assembles and stimulates topoisomerases 1 and 2 in a “topoisome”
Das, S., Kuzin, V., Cameron, D. P., Sanford, S., Jha, R. K., Nie, Z., Rosello, M. T., Holewinski, R. J., Andrésson, Þ., Wiśniewski, J., et al. (2021) · Molecular Cell · doi:10.1016/j.molcel.2021.11.016 · Cited by 113 · see citing works
Suppression of the STK15 oncogenic activity requires a transactivation‐independent p53 function
Chen, S.-S., Chang, P., Cheng, Y., et al. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf409 · Cited by 111 · see citing works
Lai, Y., Kviklyte, S., Vertommen, D., Lantier, L., Foretz, M., Viollet, B., Hallén, S., & Rider, M. H. (2014) · Biochemical Journal · doi:10.1042/bj20131673 · Cited by 98 · see citing works
Pujato, M. A., Kieken, F., Skiles, A. A., Tapinos, N., & Fiser, A. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku1228 · Cited by 93 · see citing works
p53 negatively regulates Aurora A via both transcriptional and posttranslational regulation
Wu, C.-C., Yang, T., Yu, C. R., et al. (2012) · Cell Cycle · doi:10.4161/cc.21732 · Cited by 70 · see citing works
Zhang, J., Chen, S., Zhang, W., et al. (2008) · Gene · doi:10.1016/j.gene.2008.03.002 · Cited by 55 · see citing works
Yamashita, S., Ogawa, K., Ikei, T., Fujiki, T., & Katakura, Y. (2014) · PLoS ONE · doi:10.1371/journal.pone.0101864 · Cited by 34 · see citing works
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Recent advances in targeting the “undruggable” proteins: from drug discovery to clinical trials
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Acetylation targeting chimera enables acetylation of the tumor suppressor p53
Kabir, M., Sun, N., Hu, X., Martin, T. C., Yi, J., Zhong, Y., Xiong, Y., Kaniskan, H. Ü., Gu, W., Parsons, R., et al. (2023) · Journal of the American Chemical Society · doi:10.1021/jacs.3c04640 · Cited by 65 · see citing works
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- Authors
- Liu, J., Yu, X., Chen, H., Kaniskan, H. Ü., Xie, L., Chen, X., Jin, J., & Wei, W.
- Affiliations
- Beth Israel Deaconess Medical Center (US)
- Tisch Cancer Institute (US)
- Mount Sinai Center for Therapeutics Discovery, Departments of Pharmacological Sciences and Oncological Sciences, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, New York 10029, United States
- University of North Carolina at Chapel Hill (US)
- Corresponding author
- Jin, Jian
- Wei, Wenyi
- Venue
- Journal of the American Chemical Society
- Publisher
- American Chemical Society (ACS)
- Published
- 2022-07-05
- Volume
- 144
- Issue
- 28
- Pages
- 12934-12941
- ISSN
- 0002-7863 (ISSN-L)
- 1520-5126
- PMC
- PMC10981454
- OpenAlex
- W4283836349
- Cited by
- 73
- References
- 49
- Citations by year
- 2026: 20 · 2025: 19 · 2024: 16 · 2023: 15 · 2022: 2 · 2014: 1
- FWCI
- 4.25
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- Locations
- Journal of the American Chemical Society (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Cancer Institute (P30CA196521, R35CA253027)
- Icahn School of Medicine at Mount Sinai
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Degradation and Inhibitors
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chemical Synthesis and Analysis
- Keywords
- targeted protein degradation, OTUB1, deubiquitinase, protein stabilization, FOXO3, p53, IRF3, DNA oligonucleotides, covalent ligands, click chemistry, cancer therapy
- MeSH terms
- Humans, Transcription Factors, Tumor Suppressor Protein p53, Tumor Suppressor Proteins, Proteolysis, Carcinogenesis
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