DNA/RNA: Building Blocks of Life Under UV Irradiation
Open accessAbstract
During the last 10 years, intense experimental and theoretical work has proven the existence of ultrafast nonradiative decay routes for UV-excited monomeric nucleic acid bases, accounting for their high photostability. This mechanism has been explained by the occurrence of easily accessible conical intersections connecting the first excited ππ* state with the ground state. However, recent studies of substituent and solvent effects indicate that the situation is more complicated than what was initially thought, notably by the presence of dark excited states. Moreover, the actual shape of the excited-state potential energy surface may induce nonexponential dynamics. Further efforts are needed in order to clarify how various environmental factors affect the structural and dynamical aspects of the nucleic acid base excited states.
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Microbial spores shift DNA from B-form to an A-like form that cannot make CPDs, using small acid soluble proteins that bind the DNA helix, because protein UV shielding is only a 2-fold effect.
“Microbial spores need to prevent CPDs and other lethal DNA damage for long time periods. UV shielding by protein is only a 2-fold effect. So spores instead shift their DNA conformation from B-form to an A-like form that can’t make CPDs, using small acid soluble proteins that bind the DNA helix (308).”
From Chemiexcitation: Mammalian Photochemistry in the Dark<sup>†</sup> (2023) · cites this paper as [308]
The Abstract discusses UV photostability of nucleic-acid bases, not protection of microbial spores. Searches for spores, small acid-soluble proteins, A-like DNA, CPDs, and two-fold protein shielding found no passage addressing the attributed mechanism or measurement. (LLM, conf=0.75)
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Cites
Ultrafast Excited-State Dynamics in Nucleic Acids
Crespo‐Hernández, C. E., Cohen, B., Hare, P. M., & Kohler, B. (2004) · Chemical Reviews · doi:10.1021/cr0206770 · Cited by 1,280 · see citing works
DNA Excited-State Dynamics: From Single Bases to the Double Helix
Middleton, C. T., de La Harpe, K., Su, C., Law, Y. K., Crespo-Hernández, C. E., & Kohler, B. (2009) · Annual Review of Physical Chemistry · doi:10.1146/annurev.physchem.59.032607.093719 · Cited by 827 · see citing works
Canuel, C., Mons, M., Piuzzi, F., Tardivel, B., Dimicoli, I., & Elhanine, M. (2005) · The Journal of Chemical Physics · doi:10.1063/1.1850469 · Cited by 409 · see citing works
Gustavsson, T., Bányász, Á., Lazzarotto, E., Markovitsi, D., Scalmani, G., Frisch, M. J., Barone, V., & Improta, R. (2005) · Journal of the American Chemical Society · doi:10.1021/ja056181s · Cited by 394 · see citing works
Self-citationOnidas, D., Markovitsi, D., Marguet, S., Sharonov, A., & Gustavsson, T. (2002) · The Journal of Physical Chemistry B · doi:10.1021/jp026063g · Cited by 312 · see citing works
Self-citationAre the five natural DNA/RNA base monomers a good choice from natural selection?
Serrano-Andrés, L., & Merchán, M. (2009) · Journal of Photochemistry and Photobiology C: Photochemistry Reviews · doi:10.1016/j.jphotochemrev.2008.12.001 · Cited by 305 · see citing works
Radiationless Decay of Excited States of Uracil through Conical Intersections
Matsika, S. (2004) · The Journal of Physical Chemistry A · doi:10.1021/jp048284n · Cited by 295 · see citing works
Excited States and Free Radicals in Biology and Medicine
Bensasson, R. V., Land, E. J., & Truscott, T. G. (1993) · doi:10.1093/oso/9780198555605.001.0001 · Cited by 281 · see citing works
Ultrafast Internal Conversion of Electronically Excited RNA and DNA Nucleosides in Water
Pecourt, J.-M. L., Peón, J., & Kohler, B. E. (2000) · Journal of the American Chemical Society · doi:10.1021/ja0021520 · Cited by 277 · see citing works
Peón, J., & Zewail, A. H. (2001) · Chemical Physics Letters · doi:10.1016/s0009-2614(01)01128-9 · Cited by 274 · see citing works
Unified Model for the Ultrafast Decay of Pyrimidine Nucleobases
Merchán, M., González-Luque, R., Climent, T., Serrano‐Andrés, L., Rodríguez, E., Reguero, M., & Peláez, D. (2006) · The Journal of Physical Chemistry B · doi:10.1021/jp066874a · Cited by 261 · see citing works
A Doorway State Leads to Photostability or Triplet Photodamage in Thymine DNA
Kwok, W., Ma, C., & Phillips, D. L. (2008) · Journal of the American Chemical Society · doi:10.1021/ja077831q · Cited by 212 · see citing works
Sobolewski, A. L., & Domcke, W. (2002) · The European Physical Journal D · doi:10.1140/epjd/e2002-00164-5 · Cited by 209 · see citing works
Excited states and free radicals in biology and medicine
Brown, R. (1995) · Journal of Photochemistry and Photobiology A Chemistry · doi:10.1016/1010-6030(95)90007-1 · Cited by 186 · see citing works
Excited‐State Dynamics of Cytosine Reveal Multiple Intrinsic Subpicosecond Pathways
Hudock, H. R., & Martı́nez, T. J. (2008) · ChemPhysChem · doi:10.1002/cphc.200800649 · Cited by 153 · see citing works
Santoro, F., Barone, V., Gustavsson, T., et al. (2006) · Journal of the American Chemical Society · doi:10.1021/ja0657861 · Cited by 153 · see citing works
Self-citationGustavsson, T., Sharonov, A., & Markovitsi, D. (2002) · Chemical Physics Letters · doi:10.1016/s0009-2614(01)01375-6 · Cited by 136 · see citing works
Self-citationKarunakaran, V., Kleinermanns, K., Improta, R., & Kovalenko, S. A. (2009) · Journal of the American Chemical Society · doi:10.1021/ja810092k · Cited by 125 · see citing works
Self-citationHare, P. M., Crespo‐Hernández, C. E., & Kohler, B. E. (2006) · The Journal of Physical Chemistry B · doi:10.1021/jp064714t · Cited by 121 · see citing works
Blancafort, L., Cohen, B., Hare, P. M., Kohler, B., & Robb, M. A. (2005) · The Journal of Physical Chemistry A · doi:10.1021/jp045614v · Cited by 111 · see citing works
Gustavsson, T., Sarkar, N., Lazzarotto, E., Markovitsi, D., & Improta, R. (2006) · Chemical Physics Letters · doi:10.1016/j.cplett.2006.08.058 · Cited by 99 · see citing works
Self-citationPancur, T., Schwalb, N. K., Renth, F., et al. (2005) · Chemical Physics · doi:10.1016/j.chemphys.2004.12.019 · Cited by 97 · see citing works
STUDIES ON THYMINE AND URACIL TRIPLET EXCITED STATE IN ACETONITRILE AND WATER
SALET, C., & Bensasson, R. V. (1975) · Photochemistry and Photobiology · doi:10.1111/j.1751-1097.1975.tb06741.x · Cited by 91 · see citing works
Energetics of Cytosine Singlet Excited-State Decay Paths-A Difficult Case for CASSCF and CASPT2†
Blancafort, L. (2007) · Photochemistry and Photobiology · doi:10.1562/2006-05-29-ra-903 · Cited by 89 · see citing works
Deciphering Low Energy Deactivation Channels in Adenine
Conti, I., Garavelli, M., & Orlandi, G. (2009) · Journal of the American Chemical Society · doi:10.1021/ja902311y · Cited by 78 · see citing works
Absorption of UV radiation by DNA: Spatial and temporal features
Markovitsi, D., Gustavsson, T., & Bányász, Á. (2009) · Mutation Research/Reviews in Mutation Research · doi:10.1016/j.mrrev.2009.11.003 · Cited by 76 · see citing works
Self-citationExcited-State Dynamics of dGMP Measured by Steady-State and Femtosecond Fluorescence Spectroscopy
Miannay, F., Gustavsson, T., Bányász, Á., et al. (2010) · The Journal of Physical Chemistry A · doi:10.1021/jp909410b · Cited by 70 · see citing works
Self-citationTime-resolved infrared spectroscopy of the lowest triplet state of thymine and thymidine
Hare, P. M., Middleton, C. T., Mertel, K. I., Herbert, J. M., & Kohler, B. (2007) · Chemical Physics · doi:10.1016/j.chemphys.2007.10.035 · Cited by 70 · see citing works
Improta, R., Barone, V., Lami, A., & Santoro, F. (2009) · The Journal of Physical Chemistry B · doi:10.1021/jp906524p · Cited by 70 · see citing works
Self-citationMarkovitsi, D., Sharonov, A., Onidas, D., & Gustavsson, T. (2003) · ChemPhysChem · doi:10.1002/cphc.200390050 · Cited by 68 · see citing works
Self-citationMercier, Y., Santoro, F., Reguero, M., et al. (2008) · The Journal of Physical Chemistry B · doi:10.1021/jp804785p · Cited by 66 · see citing works
Towrie, M., Doorley, G. W., George, M. W., et al. (2009) · The Analyst · doi:10.1039/b902108f · Cited by 64 · see citing works
Sharonov, A., Gustavsson, T., Carré, V., et al. (2003) · Chemical Physics Letters · doi:10.1016/j.cplett.2003.09.021 · Cited by 58 · see citing works
Self-citationExcited-State Structural Dynamics of 5-Fluorouracil
Billinghurst, B. E., Yeung, R., & Loppnow, G. R. (2006) · The Journal of Physical Chemistry A · doi:10.1021/jp0609333 · Cited by 57 · see citing works
Doorley, G. W., McGovern, D. A., George, M. W., Towrie, M., Parker, A. W., Kelly, J. M., & Quinn, S. J. (2008) · Angewandte Chemie International Edition · doi:10.1002/anie.200803904 · Cited by 57 · see citing works
Improta, R., & Barone, V. (2008) · Theoretical Chemistry Accounts · doi:10.1007/s00214-007-0404-5 · Cited by 51 · see citing works
Self-citationPhotophysical properties of 5-methylcytidine
Sharonov, A., Gustavsson, T., Marguet, S., & Markovitsi, D. (2003) · Photochemical & Photobiological Sciences · doi:10.1039/b212664h · Cited by 49 · see citing works
Self-citationHigh‐Energy Long‐Lived Excited States in DNA Double Strands
Vayá, I., Miannay, F., Gustavsson, T., & Markovitsi, D. (2010) · ChemPhysChem · doi:10.1002/cphc.201000027 · Cited by 41 · see citing works
Self-citationSantoro, F., Improta, R., & Barone, V. (2009) · Theoretical Chemistry Accounts · doi:10.1007/s00214-009-0527-y · Cited by 19 · see citing works
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Research works printed but not linked: 1
- Sharonov, A.; Gustavsson, T.; Carré, V.; Renault, E.; Markovitsi, D. Cytosine Excited State Dynamics Studied by Femtosecond Spectroscopy, Chem. Phys. Lett. 2003, 380, 173-180.
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Reichardt, C., Guo, C., & Crespo-Hernández, C. E. (2011) · The Journal of Physical Chemistry B · doi:10.1021/jp112018u · Cited by 109 · see citing works
<scp>UV</scp>‐induced<scp>DNA</scp>Damage: The Role of Electronic Excited States
Markovitsi, D. (2016) · Photochemistry and Photobiology · doi:10.1111/php.12533 · Cited by 100 · see citing works
Self-citationRios, A. C., & Tor, Y. (2013) · Israel Journal of Chemistry · doi:10.1002/ijch.201300009 · Cited by 98 · see citing works
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Marchetti, B., & Karsili, T. N. V. (2016) · Physical Chemistry Chemical Physics · doi:10.1039/c5cp06767g · Cited by 48 · see citing works
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Premi, S., & Brash, D. E. (2016) · DNA Repair · doi:10.1016/j.dnarep.2016.05.023 · Cited by 47 · see citing works
Chemiexcitation: Mammalian Photochemistry in the Dark<sup>†</sup>
Brash, D. E., & Goncalves, L. C. P. (2023) · Photochemistry and Photobiology · doi:10.1111/php.13781 · Cited by 16 · see citing works
- Authors
- Gustavsson, T., Improta, R., & Markovitsi, D.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Corresponding author
- Gustavsson, Thomas
- Venue
- The Journal of Physical Chemistry Letters
- Publisher
- American Chemical Society (ACS)
- Published
- 2010-06-15
- Volume
- 1
- Issue
- 13
- Pages
- 2025-2030
- ISSN
- 1948-7185 (ISSN-L)
- OpenAlex
- W2040814412
- Cited by
- 202
- References
- 39
- Citations by year
- 2026: 6 · 2025: 3 · 2024: 7 · 2023: 11 · 2022: 6 · 2021: 10 · 2020: 14 · 2019: 16 · 2018: 12 · 2017: 13 · 2016: 16 · 2015: 19 · 2014: 16 · 2013: 24 · 2012: 15
- FWCI
- 11.01
- Type
- journal article
- Language
- en
- Open access
- green
- hal.science
- Licence
- other-oa
- Locations
- The Journal of Physical Chemistry Letters (publishedVersion)
- HAL (submittedVersion, other-oa)
- Topics
- Physical Sciences › Chemistry › Physical and Theoretical Chemistry › Photochemistry and Electron Transfer Studies
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Spectroscopy and Quantum Chemical Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
- Keywords
- nucleobases, UV photostability, nonradiative decay, conical intersections, excited-state potential energy surface, solvent effects, substituent effects, ultrafast dynamics, ππ* excited states
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