Cited by 60HIV Research and TreatmentAdvanced Proteomics Techniques and ApplicationsT-cell and Retrovirus Studies

The Conserved Set of Host Proteins Incorporated into HIV-1 Virions Suggests a Common Egress Pathway in Multiple Cell Types

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Linde, Michael E., Colquhoun, David R., Ubaida Mohien, Ceereena, Kole, Thomas, Aquino, Veronica, Cotter, Robert, Edwards, Nathan, Hildreth, James E.K. +1 more·2013·Journal of Proteome Research

Abstract

HIV-1 incorporates a large array of host proteins into virions. Determining the host protein composition in HIV virions has technical difficulties, including copurification of microvesicles. We developed an alternative purification technique using cholesterol that differentially modulates the density of virions and microvesicles (density modification, DM) allowing for high-yield virion purification that is essential for tandem mass spectrometric and quantitative proteomic (iTRAQ) analysis. DM purified virions were analyzed using iTRAQ and validated against Optiprep (60% iodixanol) purified virions. We were able to characterize host protein incorporation in DM-purified HIV particles derived from CD4+ T-cell lines; we compared this data set to a reprocessed data set of monocyte-derived macrophages (MDM) derived HIV-1 using the same bioinformatics pipeline. Seventy-nine clustered proteins were shared between the MDM derived and T-cell derived data set. These clusters included an extensive collection of actin isoforms, HLA proteins, chaperones, and a handful of other proteins, many of which have previously been documented to interact with viral proteins. Other proteins of note were ERM proteins, the dynamin domain containing protein EH4, a phosphodiesterase, and cyclophilin A. As these proteins are incorporated in virions produced in both cell types, we hypothesize that these proteins may have direct interactions with viral proteins or may be important in the viral life cycle. Additionally, identified common set proteins are predicted to interact with >1000 related human proteins. Many of these secondary interacting proteins are reported to be incorporated into virions, including ERM proteins and adhesion molecules. Thus, only a few direct interactions between host and viral proteins may dictate the host protein composition in virions. Ultimately, interaction and expression differences in host proteins between cell types may drive virion phenotypic diversity, despite conserved viral protein-host protein interactions between cell types.

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Authors
Linde, M. E., Colquhoun, D. R., Ubaida Mohien, C., Kole, T., Aquino, V., Cotter, R., Edwards, N., Hildreth, J. E. K., & Graham, D. R.
Affiliations
  • Johns Hopkins University (US)
  • Georgetown University (US)
  • University of California, Davis (US)
Corresponding author
Graham, David R.
Venue
Journal of Proteome Research
Published
2013-03-29
Volume
12
Issue
5
Pages
2045-2054
ISSN
  • 1535-3893 (ISSN-L)
  • 1535-3907
OpenAlex
W2115817524
Cited by
60
References
66
Citations by year
2026: 2 · 2025: 1 · 2024: 3 · 2023: 4 · 2022: 2 · 2021: 1 · 2020: 4 · 2019: 6 · 2018: 7 · 2017: 7 · 2016: 5 · 2015: 5 · 2014: 11 · 2013: 2
FWCI
3.51
Type
journal article
Language
en
Open access
Locations
  • Journal of Proteome Research (publishedVersion)
  • PubMed (publishedVersion)
  • Europe PMC (PubMed Central) (acceptedVersion)
  • PubMed Central (acceptedVersion)
Funders
  • Johns Hopkins University
  • National Institutes of Health
  • National Heart, Lung, and Blood Institute
  • National Institute of Mental Health (P01MH070306)
  • National Cancer Institute
  • National Institute of Allergy and Infectious Diseases (T32AI007247)
  • National Institute of Neurological Disorders and Stroke (R01NS039253)
Topics
  • Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
  • Physical Sciences › Chemistry › Spectroscopy › Advanced Proteomics Techniques and Applications
  • Life Sciences › Immunology and Microbiology › Immunology › T-cell and Retrovirus Studies
Keywords
HIV-1, virus purification, density modification, cholesterol, microvesicles, CD4+ T cells, monocyte-derived macrophages, actin isoforms, molecular chaperones, ERM proteins, cyclophilin A, host-virus interaction
MeSH terms
Cell Fractionation, Cell Line, Centrifugation, Density Gradient, Cholesterol, Humans, Subcellular Fractions, Virion, CD4-Positive T-Lymphocytes, HIV-1, Cluster Analysis, Proteome, Tandem Mass Spectrometry, Host-Pathogen Interactions

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