Cited by 749Plant tissue culture and regenerationEpigenetics and DNA MethylationPlant Genetic and Mutation Studies

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Epigenetic aspects of somaclonal variation in plants

Kaeppler, Shawn M., Kaeppler, Heidi F., Rhee, Yong·2000·Plant Molecular Biology

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Abstract

Somaclonal variation is manifested as cytological abnormalities, frequent qualitative and quantitative phenotypic mutation, sequence change, and gene activation and silencing. Activation of quiescent transposable elements and retrotransposons indicate that epigenetic changes occur through the culture process. Epigenetic activation of DNA elements further suggests that epigenetic changes may also be involved in cytogenetic instability through modification of heterochromatin, and as a basis of phenotypic variation through the modulation of gene function. The observation that DNA methylation patterns are highly variable among regenerated plants and their progeny provides evidence that DNA modifications are less stable in culture than in seed-grown plants. Future research will determine the relative importance of epigenetic versus sequence or chromosome variation in conditioning somaclonal variation in plants.

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Authors: Kaeppler, S. M., Kaeppler, H. F., & Rhee, Y.
Affiliations: University of Wisconsin–Madison (US)
Corresponding author: Kaeppler, Shawn M.
ORCID: Kaeppler, Shawn M.
Kaeppler, Heidi F.
Venue: Plant Molecular Biology
Publisher: Springer Science and Business Media LLC
Published: 2000-06
Volume: 43
Issue: 2-3
Pages: 179-188
ISSN: 0167-4412 (ISSN-L)
1573-5028
DOI: 10.1023/a:1006423110134
OpenAlex: W2119370926
Cited by: 743
References: 69
Citations by year: 2026: 17 · 2025: 12 · 2024: 15 · 2023: 14 · 2022: 36 · 2021: 27 · 2020: 30 · 2019: 32 · 2018: 37 · 2017: 33 · 2016: 37 · 2015: 47 · 2014: 40 · 2013: 47 · 2012: 43
FWCI: 3.95
Type: journal article
Language: en
Open access: closed
Licence: www.springernature.com/gp/researchers/text-and-data-mining (tdm)
www.springernature.com/gp/researchers/text-and-data-mining (vor)
Locations: Plant Molecular Biology (publishedVersion)
PubMed (publishedVersion)
Funders: U.S. Department of Agriculture
Topics: Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant tissue culture and regeneration
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Genetic and Mutation Studies
Keywords: somaclonal variation, epigenetic modifications, DNA methylation, transposable elements, retrotransposons, gene silencing, gene activation, heterochromatin, cytogenetic instability, plant tissue culture, epigenetic inheritance
MeSH terms: Clone Cells, Plants, Genetic Variation, Transcriptional Activation, Gene Expression Regulation, Plant, Plant Cells

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Epigenetic aspects of somaclonal variation in plants

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