Design and self-assembly of two-dimensional DNA crystals

Winfree, Erik, Liu, Furong, Wenzler, Lisa A., Seeman, Nadrian C.·1998·Nature
DOI 10.1038/28998

Cited by (1,000)

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  100. Untitled work
    2001 · 10.1002/1439-7633(20010401)2:4