Design and self-assembly of two-dimensional DNA crystals

Winfree, Erik, Liu, Furong, Wenzler, Lisa A., Seeman, Nadrian C.·1998·Nature

Cited by (1,000)

Items 101–200 of 1,000

  1. Molecular Computation by DNA Hairpin Formation
    Kensaku Sakamoto, Hidetaka Gouzu, Ken Komiya, Daisuke Kiga, Shigeyuki Yokoyama, Takashi Yokomori, Masami Hagiya · 2000 · Science
  2. Reconfigurable, braced, three-dimensional DNA nanostructures
    Russell P. Goodman, Mike Heilemann, Sören Doose, Christoph M. Erben, Achillefs N. Kapanidis, Andrew J. Turberfield · 2008 · Nature Nanotechnology
  3. Nuclease resistance of DNA nanostructures
    Arun Richard Chandrasekaran · 2021 · Nature Reviews Chemistry
  4. DNA Tile Based Self‐Assembly: Building Complex Nanoarchitectures
    Chenxiang Lin, Yan Liu, Sherri D. Rinker, Hao Yan · 2006 · ChemPhysChem
  5. Synthesis and patterning of tunable multiscale materials with engineered cells
    Allen Y. Chen, Zhengtao Deng, Amanda N. Billings, Urartu Özgür Şafak Şeker, Michelle Y. Lu, Robert J. Citorik, Bijan Zakeri, Timothy K. Lu · 2014 · Nature Materials
  6. Programmable molecular recognition based on the geometry of DNA nanostructures
    Sungwook Woo, Paul W. K. Rothemund · 2011 · Nature Chemistry
  7. Biomolecular computing systems: principles, progress and potential
    Yaakov Benenson · 2012 · Nature Reviews Genetics
  8. Functionalizing Framework Nucleic‐Acid‐Based Nanostructures for Biomedical Application
    Tao Zhang, Taoran Tian, Yunfeng Lin · 2021 · Advanced Materials
  9. Tensegrity: Construction of Rigid DNA Triangles with Flexible Four-Arm DNA Junctions
    Dage Liu, Mingsheng Wang, Zhaoxiang Deng, Richard Walulu, Chengde Mao · 2004 · Journal of the American Chemical Society
  10. A single-stranded architecture for cotranscriptional folding of RNA nanostructures
    Cody W. Geary, Paul W. K. Rothemund, Ebbe Sloth Andersen · 2014 · Science
  11. Using DNA to program the self-assembly of colloidal nanoparticles and microparticles
    W. Benjamin Rogers, William M. Shih, Vinothan Manoharan · 2016 · Nature Reviews Materials
  12. A partition function algorithm for nucleic acid secondary structure including pseudoknots
    Robert M. Dirks, N. Pierce · 2003 · Journal of Computational Chemistry
  13. Polyhedra Self-Assembled from DNA Tripods and Characterized with 3D DNA-PAINT
    Ryosuke Iinuma, Yonggang Ke, Ralf Jungmann, Thomas Schlichthaerle, Johannes B. Woehrstein, Peng Yin · 2014 · Science
  14. Thermodynamic Analysis of Interacting Nucleic Acid Strands
    Robert M. Dirks, Justin S. Bois, Joseph Schaeffer, Erik Winfree, Niles A. Pierce · 2007 · SIAM Review
  15. Recent Advances in DNA Origami-Engineered Nanomaterials and Applications
    Pengfei Zhan, Andreas Peil, Qiao Jiang, Dongfang Wang, Shikufa Mousavi, Qiancheng Xiong, Qi Shen, Yingxu Shang, Baoquan Ding, Chenxiang Lin et al. · 2023 · Chemical Reviews
  16. Polymer and biopolymer mediated self-assembly of gold nanoparticles
    Yuval Ofir, Bappaditya Samanta, Vincent M. Rotello · 2008 · Chemical Society Reviews
  17. From genes to machines: DNA nanomechanical devices
    Nadrian C. Seeman · 2005 · Trends in Biochemical Sciences
  18. Engineering nucleic acid structures for programmable molecular circuitry and intracellular biocomputation
    Jiang Li, Alexander A. Green, Hao Yan, Chunhai Fan · 2017 · Nature Chemistry
  19. Sequence-dependent thermodynamics of a coarse-grained DNA model
    Petr Šulc, Flavio Romano, Thomas E. Ouldridge, Lorenzo Rovigatti, Jonathan P. K. Doye, Ard A. Louis · 2012 · The Journal of Chemical Physics
  20. Triplex DNA Nanostructures: From Basic Properties to Applications
    Yuwei Hu, Alessandro Cecconello, Andrea Idili, Francesco Ricci, Itamar Willner · 2017 · Angewandte Chemie International Edition
  21. DNA nanotubes self-assembled from triple-crossover tiles as templates for conductive nanowires
    Dage Liu, Sung Ha Park, John H. Reif, Thomas H. LaBean · 2004 · Proceedings of the National Academy of Sciences
  22. The biological applications of DNA nanomaterials: current challenges and future directions
    Wenjuan Ma, Yuxi Zhan, Yuxin Zhang, Chenchen Mao, Xueping Xie, Yunfeng Lin · 2021 · Signal Transduction and Targeted Therapy
  23. Periodic Square-Like Gold Nanoparticle Arrays Templated by Self-Assembled 2D DNA Nanogrids on a Surface
    Junping Zhang, Yan Liu, Yonggang Ke, Hao Yan · 2006 · Nano Letters
  24. DNA‐Templated Self‐Assembly of Two‐Dimensional and Periodical Gold Nanoparticle Arrays
    Jaswinder Sharma, Rahul Chhabra, Yan Liu, Yonggang Ke, Hao Yan · 2005 · Angewandte Chemie International Edition
  25. Self-Assembled Fmoc-Peptides as a Platform for the Formation of Nanostructures and Hydrogels
    Ron Orbach, Lihi Adler‐Abramovich, Sivan Zigerson, Iris Mironi‐Harpaz, Dror Seliktar, Ehud Gazit · 2009 · Biomacromolecules
  26. DNA-Templated Self-Assembly of Protein and Nanoparticle Linear Arrays
    Hanying Li, Sung Ha Park, John H. Reif, Thomas H. LaBean, Hao Yan · 2003 · Journal of the American Chemical Society
  27. Folding and cutting DNA into reconfigurable topological nanostructures
    Dongran Han, Suchetan Pal, Yan Liu, Hao Yan · 2010 · Nature Nanotechnology
  28. Charge Hopping in DNA
    Yuri A. Berlin, Alexander L. Burin, Mark A. Ratner · 2000 · Journal of the American Chemical Society
  29. Programmable autonomous synthesis of single-stranded DNA
    Jocelyn Y. Kishi, Thomas E. Schaus, Nikhil Gopalkrishnan, Feng Xuan, Peng Yin · 2017 · Nature Chemistry
  30. Aptamer-Conjugated DNA Icosahedral Nanoparticles As a Carrier of Doxorubicin for Cancer Therapy
    Microsugar Chang, Chung‐Shi Yang, Dongming Huang · 2011 · ACS Nano
  31. Using DNA to Power Nanostructures
    Bernard Yurke, Allen Paine Mills · 2003 · Genetic Programming and Evolvable Machines
  32. Principles and Implementations of Dissipative (Dynamic) Self-Assembly
    Marcin Fiałkowski, Kyle J. M. Bishop, Rafał Klajn, Stoyan K. Smoukov, Christopher J. Campbell, Bartosz A. Grzybowski · 2006 · The Journal of Physical Chemistry B
  33. Label-Free Detection of Peptide Nucleic Acid−DNA Hybridization Using Localized Surface Plasmon Resonance Based Optical Biosensor
    Tatsuro Endo, Kağan Kerman, Naoki Nagatani, Yuzuru Takamura, Eiichi Tamiya · 2005 · Analytical Chemistry
  34. DNA as a Selective Metallization Template
    Michael Mertig, Lucio Colombi Ciacchi, Ralf Seidel, W. Pompe, Alessandro De Vita · 2002 · Nano Letters
  35. Directed nucleation assembly of DNA tile complexes for barcode-patterned lattices
    Hao Yan, Thomas H. LaBean, Liping Feng, John H. Reif · 2003 · Proceedings of the National Academy of Sciences
  36. Enzyme‐Instructed Self‐Assembly (EISA) and Hydrogelation of Peptides
    Jie Gao, Jie Zhan, Zhimou Yang · 2019 · Advanced Materials
  37. Three-Dimensional Self-Organization of Supramolecular Self-Assembled Porphyrin Hollow Hexagonal Nanoprisms
    Jin‐Song Hu, Yu‐Guo Guo, Han‐Pu Liang, Li‐Jun Wan, Li Jiang · 2005 · Journal of the American Chemical Society
  38. Concept and Development of Framework Nucleic Acids
    Zhilei Ge, Hongzhou Gu, Qian Li, Chunhai Fan · 2018 · Journal of the American Chemical Society
  39. De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity
    Scott E. Boyken, Zibo Chen, Benjamin Groves, Robert A. Langan, Gustav Oberdorfer, Alex Ford, Jason M. Gilmore, Chunfu Xu, Frank DiMaio, Jose Henrique Pereira et al. · 2016 · Science
  40. From dynamic self-assembly to networked chemical systems
    Bartosz A. Grzybowski, Krzysztof Fitzner, Jan Paczesny, Steve Granick · 2017 · Chemical Society Reviews
  41. Single-stranded DNA and RNA origami
    Han, Dongran, Qi, Xiaodong, Myhrvold, Cameron, Wang, Bei, Dai, Mingjie, Jiang, Shuoxing, Bates, Maxwell, Liu, Yan, An, Byoungkwon, Zhang, Fei et al. · 2017 · Science
  42. Casting inorganic structures with DNA molds
    Wei Sun, Étienne Boulais, Yera Hakobyan, Wei Li Wang, Amy Guan, Mark Bathe, Peng Yin · 2014 · Science
  43. Towards Supramolecular Engineering of Functional Nanomaterials: Pre‐Programming Multi‐Component 2D Self‐Assembly at Solid‐Liquid Interfaces
    Artur Ciesielski, Carlos‐Andres Palma, Massimo Bonini, Paolo Samorı́ · 2010 · Advanced Materials
  44. Stimuli-Responsive Disassembly of Nanoparticle Aggregates for Light-Up Colorimetric Sensing
    Juewen Liu, Yi Lu · 2005 · Journal of the American Chemical Society
  45. Diverse and robust molecular algorithms using reprogrammable DNA self-assembly
    Woods, Damien, Doty, David, Myhrvold, Cameron, Hui, Joy, Zhou, Felix, Yin, Peng, Winfree, Erik · 2019 · Nature
  46. DNA‐Encoded Self‐Assembly of Gold Nanoparticles into One‐Dimensional Arrays
    Zhaoxiang Deng, Ye Tian, Seung‐Hyun Lee, Alexander E. Ribbe, Chengde Mao · 2005 · Angewandte Chemie International Edition
  47. Engineering DNA-based functional materials
    Young Hoon Roh, Roanna C. H. Ruiz, Songming Peng, Jong Bum Lee, Dan Luo · 2011 · Chemical Society Reviews
  48. Molecular diagnostic and drug delivery agents based on aptamer-nanomaterial conjugates
    Jung Heon Lee, Mehmet Veysel Yigit, Debapriya Mazumdar, Yi Lu · 2010 · Advanced Drug Delivery Reviews
  49. Non‐Equilibrium Assembly of Light‐Activated Colloidal Mixtures
    Dhruv Pratap Singh, Udit Choudhury, Peer Fischer, Andrew G. Mark · 2017 · Advanced Materials
  50. DNA engineering and its application to nanotechnology
    Nadrian C. Seeman · 1999 · Trends in biotechnology
  51. DNA-based Cryptography
    Ashish Gehani, Thomas H. LaBean, John H. Reif · 2003 · Lecture notes in computer science
  52. Biomolecule-Based Nanomaterials and Nanostructures
    Itamar Willner, Bilha Willner · 2010 · Nano Letters
  53. Rationally Engineered Nucleic Acid Architectures for Biosensing Applications
    Mingshu Xiao, Wei Lai, Tiantian Man, Binbin Chang, Li Li, Arun Richard Chandrasekaran, Hao Pei · 2019 · Chemical Reviews
  54. Conformational flexibility facilitates self-assembly of complex DNA nanostructures
    Chuan Zhang, Min Su, Yu He, Xin Zhao, Ping‐An Fang, Alexander E. Ribbe, Wen Jiang, Chengde Mao · 2008 · Proceedings of the National Academy of Sciences
  55. Cryptography with DNA binary strands
    André Leier, Christoph Richter, Wolfgang Banzhaf, Hilmar Rauhe · 2000 · Biosystems
  56. Programmable DNA Self-Assemblies for Nanoscale Organization of Ligands and Proteins
    Sung Ha Park, Peng Yin, Yan Liu, John H. Reif, Thomas H. LaBean, Hao Yan · 2005 · Nano Letters
  57. Finite‐Size, Fully Addressable DNA Tile Lattices Formed by Hierarchical Assembly Procedures
    Sung Ha Park, Constantin Pistol, Sang Jung Ahn, John H. Reif, Alvin R. Lebeck, Chris L. Dwyer, Thomas H. LaBean · 2005 · Angewandte Chemie International Edition
  58. Self-assembled DNA networks and their electrical conductivity
    Lintao Cai, Hitoshi Tabata, Tomoji Kawai · 2000 · Applied Physics Letters
  59. Protein Assembly by Design
    Jie Zhu, Nicole Avakyan, Albert Kakkis, Alexander M. Hoffnagle, Kenneth Han, Yiying Li, Zhiyong Zhang, Tae Su Choi, Youjeong Na, Chung-Jui Yu et al. · 2021 · Chemical Reviews
  60. Building machines with DNA molecules
    Hamid Ramezani, Hendrik Dietz · 2019 · Nature Reviews Genetics
  61. S URFACE B IOLOGY OF DNA BY A TOMIC F ORCE M ICROSCOPY
    Helen Greenwood Hansma · 2001 · Annual Review of Physical Chemistry
  62. DNA-directed self-assembly of shape-controlled hydrogels
    Hao Qi, Majid Ghodousi, Yanan Du, Casey N. Grun, Hojae Bae, Peng Yin, Ali Khademhosseini · 2013 · Nature Communications
  63. Molecular electronics: from devices and interconnect to circuits and architecture
    Mircea R. Stan, Paul D. Franzon, Seth Copen Goldstein, John Lach, Matthew M. Ziegler · 2003 · Proceedings of the IEEE
  64. Naturally-derived biopolymer nanocomposites: Interfacial design, properties and emerging applications
    Rui Xiong, Anise M. Grant, Ruilong Ma, Shuaidi Zhang, Vladimir V. Tsukruk · 2018 · Materials Science and Engineering R Reports
  65. Electronic Coupling for Charge Transfer and Transport in DNA
    Alexander A. Voityuk, Notker Rösch, Mordechai Bixon, Joshua Jortner · 2000 · The Journal of Physical Chemistry B
  66. Nanopartikel, Proteine und Nucleinsäuren: Die Biotechnologie begegnet den Materialwissenschaften
    Christof M. Niemeyer · 2001 · Angewandte Chemie
  67. Single-Step Rapid Assembly of DNA Origami Nanostructures for Addressable Nanoscale Bioreactors
    Yanming Fu, Dongdong Zeng, Jie Chao, Yanqiu Jin, Zhao Zhang, Huajie Liu, Di Li, Hongwei Ma, Qing Huang, Kurt V. Gothelf et al. · 2012 · Journal of the American Chemical Society
  68. The architectonics of programmable RNA and DNA nanostructures
    Luc Jaeger, Arkadiusz Chworoś · 2006 · Current Opinion in Structural Biology
  69. An information-bearing seed for nucleating algorithmic self-assembly
    Robert D. Barish, Rebecca Schulman, Paul W. K. Rothemund, Erik Winfree · 2009 · Proceedings of the National Academy of Sciences
  70. Self-organized architectures from assorted DNA-framed nanoparticles
    Wenyan Liu, Jonathan D. Halverson, Ye Tian, Alexei V. Tkachenko, Oleg Gang · 2016 · Nature Chemistry
  71. DNA Nanostructure-Decorated Surfaces for Enhanced Aptamer-Target Binding and Electrochemical Cocaine Sensors
    Yanli Wen, Hao Pei, Ying Wan, Yan Ling Su, Qing Huang, Shiping Song, Chunhai Fan · 2011 · Analytical Chemistry
  72. Supramolecular Chemistry at Interfaces: Molecular Recognition on Nanopatterned Porous Surfaces
    Davide Bonifazi, Stefan Mohnani, Anna Llanes‐Pallas · 2009 · Chemistry - A European Journal
  73. Autonomous dynamic control of DNA nanostructure self-assembly
    Leopold N. Green, Hari K. K. Subramanian, Vahid Mardanlou, Jongmin Kim, Rizal F. Hariadi, Elisa Franco · 2019 · Nature Chemistry
  74. Designer DNA Nanoarchitectures
    Chenxiang Lin, Yan Liu, Hao Yan · 2009 · Biochemistry
  75. TectoRNA: modular assembly units for the construction of RNA nano-objects
    Luc Jaeger · 2001 · Nucleic Acids Research
  76. DNA molecule provides a computing machine with both data and fuel
    Yaakov Benenson, Rivka Adar, Tamar Paz-Elizur, Zvi Livneh, Ehud Y. Shapiro · 2003 · Proceedings of the National Academy of Sciences
  77. DNA-programmed assembly of nanostructures
    Kurt V. Gothelf, Thomas H. LaBean · 2005 · Organic & Biomolecular Chemistry
  78. Complexity of Self‐Assembled Shapes
    David Soloveichik, Erik Winfree · 2007 · SIAM Journal on Computing
  79. A simple DNA gate motif for synthesizing large-scale circuits
    Lulu Qian, Erik Winfree · 2011 · Journal of The Royal Society Interface
  80. Nanomanipulation using near field photonics
    David Erickson, Xavier Serey, Yih‐Fan Chen, Sudeep Mandal · 2011 · Lab on a Chip
  81. Programmable and Multifunctional DNA‐Based Materials for Biomedical Applications
    Yuezhou Zhang, Jing Tu, Dongqing Wang, Haitao Zhu, Sajal Kumar Maity, Xiangmeng Qu, Bram Bogaert, Hao Pei, Hongbo Zhang · 2018 · Advanced Materials
  82. Crystal engineering with DNA
    Christine R. Laramy, Matthew N. O’Brien, Chad Alexander Mirkin · 2019 · Nature Reviews Materials
  83. Stable RNA nanoparticles as potential new generation drugs for cancer therapy
    Yi Shu, Fengmei Pi, Ashwani Kumar Sharma, Mehdi Rajabi, Farzin Haque, Dan Shu, Markos L. Leggas, Bernard Mark Evers, Peixuan Guo · 2013 · Advanced Drug Delivery Reviews
  84. Programmable Periodicity of Quantum Dot Arrays with DNA Origami Nanotubes
    Hieu Bui, Craig Onodera, Carson Kidwell, YerPeng Tan, Elton Graugnard, Wan Kuang, Jeunghoon Lee, William B. Knowlton, Bernard Yurke, William L. Hughes · 2010 · Nano Letters
  85. Self-assembled nanostructures based on DNA: towards the development of nanobiotechnology
    Christof M. Niemeyer · 2000 · Current Opinion in Chemical Biology
  86. Optimized DNA “Nanosuitcases” for Encapsulation and Conditional Release of siRNA
    Katherine E. Bujold, John C. C. Hsu, Hanadi F. Sleiman · 2016 · Journal of the American Chemical Society
  87. Multi-step self-guided pathways for shape-changing metamaterials
    Coulais, Corentin, Sabbadini, Alberico, Vink, Fré, van Hecke, Martin · 2018 · Nature
  88. Emerging Approaches to DNA Data Storage: Challenges and Prospects
    Doricchi, Andrea, Platnich, Casey M., Gimpel, Andreas, Horn, Friederikee, Earle, Max, Lanzavecchia, German, Cortajarena, Aitziber L., Liz-Marzán, Luis M., Liu, Na, Heckel, Reinhard et al. · 2022 · ACS Nano
  89. Running time and program size for self-assembled squares
    Leonard M. Adleman, Qi Cheng, Ashish Goel, Ming-Deh A. Huang · 2001 · ACM Symposium on Theory of Computing (STOC)
  90. On Combinatorial DNA Word Design
    Amit Marathe, Anne Condon, Robert M. Corn · 2001 · Journal of Computational Biology
  91. The Statistical Mechanics of Dynamic Pathways to Self-Assembly
    Stephen Whitelam, Robert L. Jack · 2014 · Annual Review of Physical Chemistry
  92. Sequence-Encoded Self-Assembly of Multiple-Nanocomponent Arrays by 2D DNA Scaffolding
    Yariv Pinto, John D. Le, Nadrian C. Seeman, Karin Musier‐Forsyth, T. Andrew Taton, R.A. Kiehl · 2005 · Nano Letters
  93. The State of Nanoparticle-Based Nanoscience and Biotechnology: Progress, Promises, and Challenges
    Beatriz Pelaz, Sarah Jaber, Dorleta Jiménez de Aberasturi, Verena Wulf, Takuzo Aida, Jesús M. de la Fuente, Jochen Feldmann, Hermann E. Gaub, Lee Josephson, Cherie R. Kagan et al. · 2012 · ACS Nano
  94. Programmable energy landscapes for kinetic control of DNA strand displacement
    Robert R. F. Machinek, Thomas E. Ouldridge, Natalie Haley, Jonathan Bath, Andrew J. Turberfield · 2014 · Nature Communications
  95. DNA Nanostructures at the Interface with Biology
    Katherine E. Bujold, Aurélie Lacroix, Hanadi F. Sleiman · 2018 · Chem
  96. Operation of a DNA Robot Arm Inserted into a 2D DNA Crystalline Substrate
    Baoquan Ding, Nadrian C. Seeman · 2006 · Science
  97. DNA Nanodevices
    Friedrich Christian Simmel, Wendy U. Dittmer · 2005 · Small
  98. Generation of protein lattices by fusing proteins with matching rotational symmetry
    John C. Sinclair, Karen M. Davies, Catherine Vénien‐Bryan, Martin E. M. Noble · 2011 · Nature Nanotechnology
  99. DNA Nanotechnology: From Sensing and DNA Machines to Drug-Delivery Systems
    Chunhua Lü, Bilha Willner, Itamar Willner · 2013 · ACS Nano
  100. Programming Self-Assembly of DNA Origami Honeycomb Two-Dimensional Lattices and Plasmonic Metamaterials
    Pengfei Wang, Stavros Gaitanaros, Seungwoo Lee, Mark Bathe, William M. Shih, Yonggang Ke · 2016 · Journal of the American Chemical Society