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A major Y-chromosome haplogroup R1b Holocene era founder effect in Central and Western Europe

Myres, Natalie M, Rootsi, Siiri, Lin, Alice A, Järve, Mari, King, Roy J, Kutuev, Ildus, Cabrera, Vicente M, Khusnutdinova, Elza K, Pshenichnov, Andrey, Yunusbayev, Bayazit, Balanovsky, Oleg, Balanovska, Elena, Rudan, Pavao, Baldovic, Marian, Herrera, Rene J, Chiaroni, Jacques, Di Cristofaro, Julie, Villems, Richard, Kivisild, Toomas, Underhill, Peter A·2011·European Journal of Human Genetics
DOI 10.1038/ejhg.2010.146
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Abstract

The phylogenetic relationships of numerous branches within the core Y-chromosome haplogroup R-M207 support a West Asian origin of haplogroup R1b, its initial differentiation there followed by a rapid spread of one of its sub-clades carrying the M269 mutation to Europe. Here, we present phylogeographically resolved data for 2043 M269-derived Y-chromosomes from 118 West Asian and European populations assessed for the M412 SNP that largely separates the majority of Central and West European R1b lineages from those observed in Eastern Europe, the Circum-Uralic region, the Near East, the Caucasus and Pakistan. Within the M412 dichotomy, the major S116 sub-clade shows a frequency peak in the upper Danube basin and Paris area with declining frequency toward Italy, Iberia, Southern France and British Isles. Although this frequency pattern closely approximates the spread of the Linearbandkeramik (LBK), Neolithic culture, an advent leading to a number of pre-historic cultural developments during the past ≤10 thousand years, more complex pre-Neolithic scenarios remain possible for the L23(xM412) components in Southeast Europe and elsewhere.

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Research works printed but not linked: 43

  1. Barbujani G, Bertorelle G : Genetics and the population history of Europe. Proc Natl Acad Sci USA 2001; 98: 22–25. · DOI
  2. Underhill PA, Kivisild T : Use of Y chromosome and mitochondrial DNA population structure in tracing human migrations. Annu Rev Genet 2007; 41: 539–564. · DOI
  3. Green RE, Krause J, Briggs AW et al: A draft sequence of the Neandertal genome. Science 2010; 328: 710–722. · DOI · Paper page
  4. Novelletto A : Y chromosome variation in Europe: continental and local processes in the formation of the extant gene pool. Ann Hum Biol 2007; 34: 139–172. · DOI
  5. Jobling MA, Tyler-Smith C : The human Y chromosome: an evolutionary marker comes of age. Nat Rev Genet 2003; 4: 598–612. · DOI
  6. Chiaroni J, Underhill PA, Cavalli-Sforza LL : Y chromosome diversity, human expansion, drift, and cultural evolution. Proc Natl Acad Sci USA 2009; 106: 20174–20179. · DOI
  7. Cinnioğlu C, King R, Kivisild T et al: Excavating Y-chromosome haplotype strata in Anatolia. Hum Genet 2004; 114: 127–148. · DOI · Paper page
  8. Regueiro M, Cadenas AM, Gayden T, Underhill PA, Herrera RJ : Iran: tricontinental nexus for Y-chromosome driven migration. Hum Hered 2006; 61: 132–143. · DOI
  9. Wells RS, Yuldasheva N, Ruzibakiev R et al: The Eurasian heartland: a continental perspective on Y-chromosome diversity. Proc Natl Acad Sci USA 2001; 98: 10244–10249. · DOI · Paper page
  10. Sengupta S, Zhivotovsky LA, King R et al: Polarity and temporality of high-resolution Y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists. Am J Hum Genet 2006; 78: 202–221. · DOI · Paper page
  11. Sahoo S, Singh A, Himabindu G et al: A prehistory of Indian Y chromosomes: evaluating demic diffusion scenarios. Proc Natl Acad Sci USA 2006; 103: 843–848. · DOI
  12. Bereir RE, Hassan HY, Salih NA et al: Co-introgression of Y-chromosome haplogroups and the sickle cell gene across Africa's Sahel. Eur J Hum Genet 2007; 15: 1183–1185. · DOI
  13. Cruciani F, Trombetta B, Sellitto D et al: Human Y chromosome haplogroup R-V88: a paternal genetic record of early mid Holocene trans-Saharan connections and the spread of Chadic languages. Eur J Hum Genet 2010; 18: 800–807. · DOI
  14. Kayser M, Lao O, Anslinger K et al: Significant genetic differentiation between Poland and Germany follows present-day political borders, as revealed by Y-chromosome analysis. Hum Genet 2005; 117: 428–443. · DOI · Paper page
  15. Underhill PA : Inferring Human History: Clues from Y-Chromosome Haplotypes. Cold Spring Harbor Symposia on Quantitative Biology. Cold Spring Harbor Laboratory Press: NY, USA, 2003, Vol LXVIII, pp 487–493.
  16. Alonso S, Flores C, Cabrera V et al: The place of the Basques in the European Y-chromosome diversity landscape. Eur J Hum Genet 2005; 13: 1293–1302. · DOI
  17. Battaglia V, Fornarino S, Al-Zahery N et al: Y-chromosomal evidence of the cultural diffusion of agriculture in Southeast Europe. Eur J Hum Genet 2009; 17: 820–830. · DOI
  18. Al-Zahery N, Semino O, Benuzzi G et al: Y-chromosome and mtDNA polymorphisms in Iraq, a crossroad of the early human dispersal and of post-Neolithic migrations. Mol Phylogenet Evol 2003; 28: 458–472. · DOI
  19. Robino C, Crobu F, Di Gaetano C et al: Analysis of Y-chromosomal SNP haplogroups and STR haplotypes in an Algerian population sample. Int J Legal Med 2008; 122: 251–255. · DOI
  20. Rosser ZH, Zerjal T, Hurles ME et al: Y-chromosomal diversity in Europe is clinal and influenced primarily by geography, rather than by language. Am J Hum Genet 2000; 67: 1526–1543. · DOI · Paper page
  21. Semino O, Passarino G, Oefner PJ et al: The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective. Science 2000; 290: 1155–1159. · DOI
  22. Arredi B, Poloni ES, Tyler-Smith C : The Peopling of Europe. Anthropological Genetics: Theory, Methods and Applications. Cambridge University Press: Cambridge, 2010.
  23. Balaresque P, Bowden GR, Adams SM et al: A predominantly neolithic origin for European paternal lineages. PLoS Biol 2010; 8: e1000285. · DOI · Paper page
  24. Sims LM, Garvey D, Ballantyne J : Sub-populations within the major European and African derived haplogroups R1b3 and E3a are differentiated by previously phylogenetically undefined Y-SNPs. Hum Mutat 2007; 28: 97. · DOI
  25. Myres NM, Ekins JE, Lin AA, Cavalli-Sforza LL, Woodward SR, Underhill PA : Y-chromosome short tandem repeat DYS458.2 non-consensus alleles occur independently in both binary haplogroups J1-M267 and R1b3-M405. Croat Med J 2007; 48: 450–459.
  26. Hinds DA, Stuve LL, Nilsen GB et al: Whole-genome patterns of common DNA variation in three human populations. Science 2005; 307: 1072–1079. · DOI
  27. Repping S, van Daalen SK, Brown LG et al: High mutation rates have driven extensive structural polymorphism among human Y chromosomes. Nat Genet 2006; 38: 463–467. · DOI
  28. Underhill PA, Myres NM, Rootsi S et al: Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a. Eur J Hum Genet 2009; 18: 479–484. · DOI · Paper page
  29. Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, Hammer MF : New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res 2008; 18: 830–838. · DOI · Paper page
  30. Zhivotovsky LA, Underhill PA, Cinnioğlu C et al: The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time. Am J Hum Genet 2004; 74: 50–61. · DOI
  31. Pichler I, Fuchsberger C, Platzer C et al: Drawing the history of the Hutterite population on a genetic landscape: inference from Y-chromosome and mtDNA genotypes. Eur J Hum Genet 2010; 18: 463–470. · DOI
  32. Trivedi R, Sahoo S, Singh A et al: Genetic imprints of Pleistocene origin of Indian populations: a comprehensive Phylogeographic sketch of Indian Y-chromosomes. Int J Hum Genet 2008; 8: 97–118. · DOI
  33. Shi W, Ayub Q, Vermeulen M et al: A worldwide survey of human male demographic history based on Y-SNP and Y-STR data from the HGDP-CEPH populations. Mol Biol Evol 2010; 27: 385–393. · DOI
  34. Whittle A : The first farmers; In: Cunliffe B (ed): Prehistoric Europe: An Illustrated History. Oxford University Press: Oxford, 1998, pp 136–166.
  35. Burkill M : The Middle Neolithic of the Paris Basin and North-Eastern France; In: Scarre C (ed).: Ancient France, Neolithic Societies and Their Landscapes 6000-2000 BC. The Edinburgh University Press: Edinburgh, 1983, p 394.
  36. Sherratt A : The transformation of early agrarian Europe: the later Neolithic and Copper Ages 4500-2500 BC; In: Cunliffe B (ed): Prehistoric Europe: An Illustrated History. Oxford University Press: Oxford, 1998, pp 167–201.
  37. Collard M, Edinborough K, Shennan S, Thomas M : Radiocarbon evidence indicates that migrants introduced farming to Britain. J Arch Sci 2009; 37: 866–870. · DOI
  38. Perlès C : The Early Neolithic in Greece: The First Farming Communities in Europe. Cambridge: University of Cambridge Press, 2001, p 395. · DOI
  39. Price TD : Europe's First Farmers: An Introduction: Europe's First Farmers. Cambridge University Press: Cambridge, 2000, pp 1–18. · DOI
  40. Klopfstein S, Currat M, Excoffier L : The fate of mutations surfing on the wave of a range expansion. Mol Biol Evol 2006; 23: 482–490. · DOI · Paper page
  41. Zimmermann A, Hilpert J, Wendt KP : Estimations of population density for selected periods between the Neolithic and AD 1800. Hum Biol 2009; 81: 357–380. · DOI
  42. Cuniliffe B : Iron Age societies in Western Europe and beyond, 900-140 BC; In: Cunliffe B (ed): Prehistoric Europe: An Illustrated History. Oxford University Press: Oxford, 1998, pp 336–372.
  43. Adams SM, King TE, Bosch E, Jobling MA : The case of the unreliable SNP: recurrent back-mutation of Y-chromosomal marker P25 through gene conversion. Forensic Sci Int 2006; 159: 14–20. · DOI

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Metadata

Authors
Myres, N. M., Rootsi, S., Lin, A. A., Järve, M., King, R. J., Kutuev, I., Cabrera, V. M., Khusnutdinova, E. K., Pshenichnov, A., Yunusbayev, B., Balanovsky, O., Balanovska, E., Rudan, P., Baldovic, M., Herrera, R. J., Chiaroni, J., Di Cristofaro, J., Villems, R., Kivisild, T., & Underhill, P. A.
Venue
European Journal of Human Genetics
Publisher
Springer Science and Business Media LLC
Published
2010-08-25
Volume
19
Issue
1
Pages
95-101
ISSN
  • 1018-4813
  • 1476-5438
DOI
10.1038/ejhg.2010.146
Cited by
242
References
1
Language
en
Licence
www.springer.com/tdm (tdm)

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