Common genetic variation and performance on standardized cognitive tests
Open accessAbstract
One surprising feature of the recently completed waves of genome-wide association studies is the limited impact of common genetic variation in individually detectable polymorphisms on many human traits. This has been particularly pronounced for studies on psychiatric conditions, which have failed to produce clear, replicable associations for common variants. One popular explanation for these negative findings is that many of these traits may be genetically heterogeneous, leading to the idea that relevant endophenotypes may be more genetically tractable. Aspects of cognition may be the most important endophenotypes for psychiatric conditions such as schizophrenia, leading many researchers to pursue large-scale studies on the genetic contributors of cognitive performance in the normal population as a surrogate for aspects of liability to disease. Here, we perform a genome-wide association study with two tests of executive function, Digit Symbol and Stroop Color-Word, in 1086 healthy volunteers and with an expanded cognitive battery in 514 of these volunteers. We show that, consistent with published studies of the psychiatric conditions themselves, no single common variant has a large effect (explaining >4-8% of the population variation) on the performance of healthy individuals on standardized cognitive tests. Given that these are important endophenotypes, our work is consistent with the idea that identifying rare genetic causes of psychiatric conditions may be more important for future research than identifying genetically homogenous endophenotypes.
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Many genetic and epigenetic factors, including multiple rare single nucleotide variants, copy number variations, and other structural variation, likely contribute to common complex diseases.
“It is now widely believed that many genetic and epigenetic factors are likely to contribute to common complex diseases, including multiple rare SNVs (defined by convention as those that have frequencies < 1%), copy number variations (CNVs), and other forms of structural variation. 3–12”
From Statistical analysis strategies for association studies involving rare variants (2010) · cites this paper as [12]
Rare variant effects can manifest as compound heterozygosity, the unmasking of deleterious variants through deletions on a homologous chromosome, and other haplotype context-dependent phenomena.
“Rare variant effects can manifest as compound heterozygosity,90 the ‘unmasking’ of deleterious variants via deletions on a homologous chromosome12, and other haplotype context-dependent phenomena.”
From Statistical analysis strategies for association studies involving rare variants (2010) · cites this paper as [12]
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Genome-Wide Association Analysis of Major Depressive Disorder and Its Related Phenotypes.
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- Authors
- Cirulli, E. T., Kasperavičiūtė, D., Attix, D. K., Need, A. C., Ge, D., Gibson, G., & Goldstein, D. B.
- Affiliations
- Duke University (US)
- Duke Medical Center (US)
- Georgia Institute of Technology (US)
- Corresponding author
- Goldstein, David B
- ORCID
- Venue
- European Journal of Human Genetics
- Published
- 2010-02-03
- Volume
- 18
- Issue
- 7
- Pages
- 815-820
- ISSN
- 1018-4813 (ISSN-L)
- 1476-5438
- PMC
- PMC2987367
- OpenAlex
- W2031188085
- Cited by
- 98
- References
- 52
- Citations by year
- 2025: 2 · 2023: 2 · 2022: 3 · 2021: 6 · 2020: 3 · 2019: 4 · 2018: 12 · 2017: 6 · 2016: 7 · 2015: 8 · 2014: 12 · 2013: 9 · 2012: 7
- FWCI
- 5.93
- Type
- journal article
- Language
- en
- Update notices
- erratum (2010-06-17)
- Open access
- bronze
- doi.org
- Locations
- European Journal of Human Genetics (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- UCL Discovery (University College London) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Social Sciences › Psychology › Experimental and Cognitive Psychology › Cognitive Abilities and Testing
- Health Sciences › Medicine › Psychiatry and Mental health › Schizophrenia research and treatment
- Keywords
- common genetic variants, cognitive performance, executive function, endophenotypes, schizophrenia, digit symbol test, Stroop task, genome-wide association study, psychiatric genetics, genetic heterogeneity, rare variants
- MeSH terms
- Adult, Cognition, Female, Humans, Male, Neuropsychological Tests, Reference Standards, Genetic Variation, Polymorphism, Single Nucleotide, Genome-Wide Association Study
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