The DOI matches its Crossref record; 72 of the 72 references it cites were found in a registry or an index.
Genome‐wide analysis of light‐inducible responses reveals hierarchical light signalling in Neurospora
Open accessAbstract
White collar-1 (WC-1) and white collar-2 (WC-2) are essential for light-mediated responses in Neurospora crassa, but the molecular mechanisms underlying gene induction and the roles of other real and putative photoreceptors remain poorly characterized. Unsupervised hierarchical clustering of genome-wide microarrays reveals 5.6% of detectable transcripts, including several novel mediators, that are either early or late light responsive. Evidence is shown for photoreception in the absence of the dominant, and here confirmed, white collar complex (WCC) that regulates both types of light responses. VVD primarily modulates late responses, whereas light-responsive submerged protoperithecia-1 (SUB-1), a GATA family transcription factor, is essential for most late light gene expression. After a 15-min light stimulus, the WCC directly binds the sub-1 promoter. Bioinformatics analysis detects many early light response elements (ELREs), as well as identifying a late light response element (LLRE) required for wild-type activity of late light response promoters. The data provide a global picture of transcriptional response to light, as well as illuminating the cis- and trans-acting elements comprising the regulatory signalling cascade that governs the photobiological response.
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Cites
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Self-citationOrchestrated Transcription of Key Pathways in Arabidopsis by the Circadian Clock
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Cited by
Fuller, K. K., Ringelberg, C. S., Loros, J. J., & Dunlap, J. C. (2013) · mBio · doi:10.1128/mbio.00142-13 · Cited by 136
Self-citationBello, M. H., Barrera-Perez, V., Morin, D., & Epstein, L. (2012) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2011.12.007 · Cited by 126
Metadata
- Authors
- Chen, C., Ringelberg, C. S., Gross, R. H., Dunlap, J. C., & Loros, J. J.
- Venue
- The EMBO Journal
- Published
- 2009-03-05
- Volume
- 28
- Issue
- 8
- Pages
- 1029-1042
- ISSN
- 0261-4189 (ISSN-L)
- 1460-2075
- OpenAlex
- W2145120518
- Cited by
- 264
- References
- 72
- FWCI
- 22.29
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Chen, C., Ringelberg, C. S., Gross, R. H., Dunlap, J. C., & Loros, J. J. (2009). Genome‐wide analysis of light‐inducible responses reveals hierarchical light signalling in Neurospora. The EMBO Journal. https://doi.org/10.1038/emboj.2009.54
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
