Copy number variations of chromosome 16p13.1 region associated with schizophrenia
Open accessAbstract
Deletions and reciprocal duplications of the chromosome 16p13.1 region have recently been reported in several cases of autism and mental retardation (MR). As genomic copy number variants found in these two disorders may also associate with schizophrenia, we examined 4345 schizophrenia patients and 35,079 controls from 8 European populations for duplications and deletions at the 16p13.1 locus, using microarray data. We found a threefold excess of duplications and deletions in schizophrenia cases compared with controls, with duplications present in 0.30% of cases versus 0.09% of controls (P=0.007) and deletions in 0.12 % of cases and 0.04% of controls (P>0.05). The region can be divided into three intervals defined by flanking low copy repeats. Duplications spanning intervals I and II showed the most significant (P = 0.00010) association with schizophrenia. The age of onset in duplication and deletion carriers among cases ranged from 12 to 35 years, and the majority were males with a family history of psychiatric disorders. In a single Icelandic family, a duplication spanning intervals I and II was present in two cases of schizophrenia, and individual cases of alcoholism, attention deficit hyperactivity disorder and dyslexia. Candidate genes in the region include NTAN1 and NDE1. We conclude that duplications and perhaps also deletions of chromosome 16p13.1, previously reported to be associated with autism and MR, also confer risk of schizophrenia.
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Several individual CNV loci have been strongly implicated as risk factors for schizophrenia.
“several individual CNV loci have been strongly implicated as risk factors for schizophrenia with high degrees of statistical confidence. These include deletions at 1q21.1, NRXN1, 3q29, 15q11.2, 15q13.3, 22q11.2 and duplications at VIPR2, 16p11.2, 16p13.1 and 15q11-q13.2, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13”
From De novo CNV analysis implicates specific abnormalities of postsynaptic signalling complexes in the pathogenesis of schizophrenia (2012) · cites this paper as [10]
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- Authors
- Ingason, A., Rujescu, D., Cichon, S., Sigurdsson, E., Sigmundsson, T., Pietiläinen, O. P. H., Buizer-Voskamp, J. E., Strengman, E., Francks, C., Muglia, P., Gylfason, A., Gustafsson, O., Olason, P. I., Steinberg, S., Hansen, T., Jakobsen, K. D., Rasmussen, H. B., Giegling, I., Möller, H.-J., Hartmann, A., Crombie, C., Fraser, G., Walker, N., Lonnqvist, J., Suvisaari, J., Tuulio-Henriksson, A., Bramon, E., Kiemeney, L. A., Franke, B., Murray, R., Vassos, E., Toulopoulou, T., Mühleisen, T. W., Tosato, S., Ruggeri, M., Djurovic, S., Andreassen, O. A., Zhang, Z., Werge, T., Ophoff, R. A., GROUP Investigators, Rietschel, M., Nöthen, M. M., Petursson, H., Stefansson, H., Peltonen, L., Collier, D., Stefansson, K., & Clair, D. M. S.
- Affiliations
- deCODE Genetics (Iceland) (IS)
- Ludwig-Maximilians-Universität München (DE)
- University of Bonn (DE)
- National University Hospital of Iceland (IS)
- University Medical Center Utrecht (NL)
- GlaxoSmithKline (Italy) (IT)
- Sankt Hans Hospital (DK)
- University of Aberdeen (GB)
- King's College London (GB)
- Radboud University Medical Center (NL)
- University of Verona (IT)
- Oslo University Hospital (NO)
- University of California, Los Angeles (US)
- Heidelberg University (DE)
- Broad Institute (US)
- Corresponding author
- Clair, D M St
- ORCID
- Ingason, A
- Rujescu, D
- Cichon, S
- Pietiläinen, O P H
- Strengman, E
- Francks, C
- Muglia, P
- Gylfason, A
- Olason, P I
- Steinberg, S
- Hansen, T
- Giegling, I
- Suvisaari, J
- Bramon, E
- Kiemeney, L A
- Franke, B
- Murray, R
- Vassos, E
- Toulopoulou, T
- Mühleisen, T W
- Tosato, S
- Ruggeri, M
- Djurovic, S
- Andreassen, O A
- Werge, T
- Ophoff, R A
- Rietschel, M
- Nöthen, M M
- Peltonen, L
- Collier, D
- Clair, D M St
- Venue
- Molecular Psychiatry
- Published
- 2009-09-29
- Volume
- 16
- Issue
- 1
- Pages
- 17-25
- ISSN
- 1359-4184 (ISSN-L)
- 1476-5578
- PMC
- PMC3330746
- OpenAlex
- W2144799876
- Cited by
- 258
- References
- 48
- Citations by year
- 2025: 6 · 2024: 5 · 2023: 5 · 2022: 11 · 2021: 9 · 2020: 14 · 2019: 7 · 2018: 11 · 2017: 11 · 2016: 13 · 2015: 17 · 2014: 17 · 2013: 35 · 2012: 36
- FWCI
- 18.91
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Molecular Psychiatry (publishedVersion)
- PubMed (publishedVersion)
- Research Publications (Maastricht University) (publishedVersion, other-oa)
- VU Research Portal (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Digital Academic REpository of VU University Amsterdam (Vrije Universiteit Amsterdam) (submittedVersion)
- UCL Discovery (University College London) (submittedVersion)
- The HKU Scholars Hub (University of Hong Kong) (submittedVersion)
- JuSER (Forschungszentrum Jülich) (submittedVersion)
- Research Portal (King's College London) (submittedVersion)
- Lirias (KU Leuven) (submittedVersion)
- Pure Amsterdam UMC (submittedVersion)
- Research at the University of Copenhagen (University of Copenhagen) (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion, other-oa)
- University of Groningen research database (University of Groningen / Centre for Information Technology) (submittedVersion)
- Radboud Repository (Radboud University) (submittedVersion)
- Hirsla (Landspítali University Hospital) (submittedVersion)
- Research Publications (Maastricht University) (submittedVersion, other-oa)
- Funders
- Wellcome Trust (089061)
- National Institute for Health and Care Research (PDA/02/06/016)
- National Institute of Mental Health (R01MH078075)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomic variations and chromosomal abnormalities
- Health Sciences › Medicine › Psychiatry and Mental health › Schizophrenia research and treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genome Rearrangement Algorithms
- Keywords
- schizophrenia, copy number variation, duplication, deletion, genetic risk, autism spectrum disorder, intellectual disability, segmental duplication, NDE1, family history of mental illness, age of onset
- MeSH terms
- Adolescent, Adult, Child, Chromosome Aberrations, Chromosome Mapping, Chromosomes, Human, Pair 16, Female, Humans, Male, Reference Values, Schizophrenia, Case-Control Studies, Sequence Deletion, Young Adult, DNA Copy Number Variations, Segmental Duplications, Genomic
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