Genetic and functional analyses demonstrate a role for abnormal glycinergic signaling in autism
Open accessAbstract
Autism spectrum disorder (ASD) is a common neurodevelopmental condition characterized by marked genetic heterogeneity. Recent studies of rare structural and sequence variants have identified hundreds of loci involved in ASD, but our knowledge of the overall genetic architecture and the underlying pathophysiological mechanisms remains incomplete. Glycine receptors (GlyRs) are ligand-gated chloride channels that mediate inhibitory neurotransmission in the adult nervous system but exert an excitatory action in immature neurons. GlyRs containing the α2 subunit are highly expressed in the embryonic brain, where they promote cortical interneuron migration and the generation of excitatory projection neurons. We previously identified a rare microdeletion of the X-linked gene GLRA2, encoding the GlyR α2 subunit, in a boy with autism. The microdeletion removes the terminal exons of the gene (GLRA2(Δex8-9)). Here, we sequenced 400 males with ASD and identified one de novo missense mutation, p.R153Q, absent from controls. In vitro functional analysis demonstrated that the GLRA2(Δex8)(-)(9) protein failed to localize to the cell membrane, while the R153Q mutation impaired surface expression and markedly reduced sensitivity to glycine. Very recently, an additional de novo missense mutation (p.N136S) was reported in a boy with ASD, and we show that this mutation also reduced cell-surface expression and glycine sensitivity. Targeted glra2 knockdown in zebrafish induced severe axon-branching defects, rescued by injection of wild type but not GLRA2(Δex8-9) or R153Q transcripts, providing further evidence for their loss-of-function effect. Glra2 knockout mice exhibited deficits in object recognition memory and impaired long-term potentiation in the prefrontal cortex. Taken together, these results implicate GLRA2 in non-syndromic ASD, unveil a novel role for GLRA2 in synaptic plasticity and learning and memory, and link altered glycinergic signaling to social and cognitive impairments.
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Functional disturbances in synaptic effector genes can induce local and systemic network dysfunction even in the absence of large-scale structural abnormalities, making it a critical component of the biological basis of non-syndromic ASD.
“Functional disturbances in this domain can induce local and systemic network dysfunction even in the absence of large-scale structural abnormalities, making it a critical component of the biological basis of non-syndromic ASD (Pilorge et al., 2016).”
From Biological hierarchy from genotype to phenotype in syndromic and non-syndromic autism spectrum disorder (2026) · cites this paper as Pilorge et al., 2016
The Discussion links GLRA2 disruption to a likely excitation–inhibition imbalance in cortical neuronal networks, and the section on Glra2 knockout mice reports impaired prefrontal synaptic plasticity. The paper does not establish systemic network dysfunction or show that these effects occur in the absence of large-scale structural abnormalities. Its findings support a role for altered glycinergic signaling in ASD, but not the full breadth of the claim. (LLM, conf=0.86)
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Cites
Synaptic, transcriptional and chromatin genes disrupted in autism
Study, T. D., De Rubeis, S., Autism, H. M. C. F., UK10K Consortium, The Autism Sequencing Consortium, He, X., Goldberg, A. P., Poultney, C. S., Samocha, K., Ercument Cicek, A., et al. (2014) · Nature · doi:10.1038/nature13772 · Cited by 2,746 · see citing works
Functional impact of global rare copy number variation in autism spectrum disorders
Pinto, D., Pagnamenta, A. T., Klei, L., Anney, R., Merico, D., Regan, R., Conroy, J., Magalhaes, T. R., Correia, C., Abrahams, B. S., et al. (2010) · Nature · doi:10.1038/nature09146 · Cited by 2,013 · cited 6× · see citing works
“In conclusion, we used a combination of genetics and functional studies to demonstrate that GLRA2 mutations resulting in loss of function are associated with ASD, language delay, and cognitive impairment in humans.”
InfluentialSelf-citationNeuroligins and neurexins link synaptic function to cognitive disease
Südhof, T. C. (2008) · Nature · doi:10.1038/nature07456 · Cited by 1,849 · see citing works
Durand, C. M., Betancur, C., Boeckers, T. M., Bockmann, J., Chaste, P., Fauchereau, F., Nygren, G., Rastam, M., Gillberg, I. C., Anckarsäter, H., et al. (2007) · Nature Genetics · doi:10.1038/ng1933 · Cited by 1,602 · see citing works
Self-citationInterneuron dysfunction in psychiatric disorders
Marín, O. (2012) · Nature Reviews Neuroscience · doi:10.1038/nrn3155 · Cited by 1,190 · see citing works
Dysfunction in GABA signalling mediates autism-like stereotypies and Rett syndrome phenotypes
Chao, H.-T., Chen, H., Samaco, R. C., Xue, M., Chahrour, M., Yoo, J., Neul, J. L., Gong, S., Lu, H.-C., Heintz, N., et al. (2010) · Nature · doi:10.1038/nature09582 · Cited by 1,168 · see citing works
Convergence of genes and cellular pathways dysregulated in autism spectrum disorders
Pinto, D., Delaby, E., Merico, D., Barbosa, M., Merikangas, A., Klei, L., Thiruvahindrapuram, B., Xu, X., Ziman, R., Wang, Z., et al. (2014) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2014.03.018 · Cited by 969 · see citing works
Self-citationAutistic-like behaviour in Scn1a+/− mice and rescue by enhanced GABA-mediated neurotransmission
Han, S., Tai, C., Westenbroek, R. E., Yu, F. H., Cheah, C. S., Potter, G. B., Rubenstein, J. L., Scheuer, T., de la Iglesia, H. O., & Catterall, W. A. (2012) · Nature · doi:10.1038/nature11356 · Cited by 643 · see citing works
The rodent hippocampus is essential for nonspatial object memory
Cohen, S. J., Munchow, A. H., Rios, L. M., Zhang, G., Ásgeirsdóttir, H. N., & Stackman, R. W. (2013) · Current Biology · doi:10.1016/j.cub.2013.07.002 · Cited by 325 · see citing works
Nagai, T., Takuma, K., Kamei, H., Ito, Y., Nakamichi, N., Ibi, D., Nakanishi, Y., Murai, M., Mizoguchi, H., Nabeshima, T., et al. (2007) · Learning & Memory · doi:10.1101/lm.461407 · Cited by 184 · see citing works
Barbosa, F. F., Santos, J. R., Meurer, Y. S. R., Macêdo, P. T., Ferreira, L. M. S., Pontes, I. M. O., Ribeiro, A. M., & Silva, R. H. (2013) · Frontiers in Behavioral Neuroscience · doi:10.3389/fnbeh.2013.00112 · Cited by 79 · see citing works
Flagged first, then by citations
Research works printed but not linked: 52
- Sanders SJ, Ercan-Sencicek AG, Hus V, Luo R, Murtha MT, Moreno-De-Luca D et al. Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism. Neuron 2011; 70: 863-885.
- Betancur C. Etiological heterogeneity in autism spectrum disorders: more than 100 genetic and genomic disorders and still counting. Brain Res 2011; 1380: 42-77.
- Iossifov I, O'Roak BJ, Sanders SJ, Ronemus M, Krumm N, Levy D et al. The contribution of de novo coding mutations to autism spectrum disorder. Nature 2014; 515: 216-221.
- Lubs HA, Stevenson RE, Schwartz CE. Fragile X and X-linked intellectual disability: four decades of discovery. Am J Hum Genet 2012; 90: 579-590.
- Ebert DH, Greenberg ME. Activity-dependent neuronal signalling and autism spectrum disorder. Nature 2013; 493: 327-337.
- Lynch JW. Native glycine receptor subtypes and their physiological roles. Neuropharmacology 2009; 56: 303-309.
- Malosio ML, Marqueze-Pouey B, Kuhse J, Betz H. Widespread expression of glycine receptor subunit mRNAs in the adult and developing rat brain. EMBO J 1991; 10: 2401-2409.
- Kang HJ, Kawasawa YI, Cheng F, Zhu Y, Xu X, Li M et al. Spatio-temporal transcriptome of the human brain. Nature 2011; 478: 483-489.
- Thomas RH, Chung SK, Wood SE, Cushion TD, Drew CJ, Hammond CL et al. Genotype-phenotype correlations in hyperekplexia: apnoeas, learning difficulties and speech delay. Brain 2013; 136: 3085-3095.
- Harvey RJ, Depner UB, Wassle H, Ahmadi S, Heindl C, Reinold H et al. GlyR alpha3: an essential target for spinal PGE2- mediated inflammatory pain sensitization. Science 2004; 304: 884-887.
- Winkelmann A, Maggio N, Eller J, Caliskan G, Semtner M, Haussler U et al. Changes in neural network homeostasis trigger neuropsychiatric symptoms. J Clin Invest 2014; 124: 696-711.
- Flint AC, Liu X, Kriegstein AR. Nonsynaptic glycine receptor activation during early neocortical development. Neuron 1998; 20: 43-53.
- Ben-Ari Y. Excitatory actions of GABA during development: the nature of the nurture. Nat Rev Neurosci 2002; 3: 728-739.
- Demarque M, Represa A, Becq H, Khalilov I, Ben-Ari Y, Aniksztejn L. Paracrine intercellular communication by a Ca 2+ -and SNARE-independent release of GABA and glutamate prior to synapse formation. Neuron 2002; 36: 1051-1061.
- Scain AL, Le Corronc H, Allain AE, Muller E, Rigo JM, Meyrand P et al. Glycine release from radial cells modulates the spontaneous activity and its propagation during early spinal cord development. J Neurosci 2010; 30: 390-403.
- Spitzer NC. Electrical activity in early neuronal development. Nature 2006; 444: 707-712.
- LoTurco JJ, Owens DF, Heath MJ, Davis MB, Kriegstein AR. GABA and glutamate depolarize cortical progenitor cells and inhibit DNA synthesis. Neuron 1995; 15: 1287-1298.
- Manent JB, Demarque M, Jorquera I, Pellegrino C, Ben-Ari Y, Aniksztejn L et al. A noncanonical release of GABA and glutamate modulates neuronal migration. J Neurosci 2005; 25: 4755-4765.
- Bortone D, Polleux F. KCC2 expression promotes the termination of cortical interneuron migration in a voltage-sensitive calcium-dependent manner. Neuron 2009; 62: 53-71.
- Sanes DH, Chokshi P. Glycinergic transmission influences the development of dendrite shape. Neuroreport 1992; 3: 323-326.
- Furuya S, Tabata T, Mitoma J, Yamada K, Yamasaki M, Makino A et al. L-serine and glycine serve as major astroglia-derived trophic factors for cerebellar Purkinje neurons. Proc Natl Acad Sci USA 2000; 97: 11528-11533.
- Tapia JC, Mentis GZ, Navarrete R, Nualart F, Figueroa E, Sanchez A et al. Early expression of glycine and GABA A receptors in developing spinal cord neurons. Effects on neurite outgrowth. Neuroscience 2001; 108: 493-506.
- Avila A, Vidal PM, Dear TN, Harvey RJ, Rigo JM, Nguyen L. Glycine receptor α2 subunit activation promotes cortical interneuron migration. Cell Rep 2013; 4: 738-750.
- Avila A, Vidal PM, Tielens S, Morelli G, Laguesse S, Harvey RJ et al. Glycine receptors control the generation of projection neurons in the developing cerebral cortex. Cell Death Differ 2014; 21: 1696-1708.
- Young TL, Cepko CL. A role for ligand-gated ion channels in rod photoreceptor development. Neuron 2004; 41: 867-879.
- Gillberg C, Gillberg C, Rastam M, Wentz E. The Asperger Syndrome (and high-functioning autism) Diagnostic Interview (ASDI): a preliminary study of a new structured clinical interview. Autism 2001; 5: 57-66.
- Soding J, Biegert A, Lupas AN. The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res 2005; 33: W244-248.
- Pless SA, Hanek AP, Price KL, Lynch JW, Lester HA, Dougherty DA et al. A cation-pi interaction at a phenylalanine residue in the glycine receptor binding site is conserved for different agonists. Mol Pharmacol 2011; 79: 742-748.
- Bai J, Blot K, Tzavara E, Nosten-Bertrand M, Giros B, Otani S. Inhibition of dopamine transporter activity impairs synaptic depression in rat prefrontal cortex through over-stimulation of D1 receptors. Cereb Cortex 2014; 24: 945-955.
- Yuen RK, Thiruvahindrapuram B, Merico D, Walker S, Tammimies K, Hoang N et al. Whole-genome sequencing of quartet families with autism spectrum disorder. Nat Med 2015; 21: 185-191.
- Piton A, Gauthier J, Hamdan FF, Lafreniere RG, Yang Y, Henrion E et al. Systematic resequencing of X-chromosome synaptic genes in autism spectrum disorder and schizophrenia. Mol Psychiatry 2011; 16: 867-880.
- Villmann C, Oertel J, Melzer N, Becker CM. Recessive hyperekplexia mutations of the glycine receptor alpha1 subunit affect cell surface integration and stability. J Neurochem 2009; 111: 837-847.
- Koshino H, Kana RK, Keller TA, Cherkassky VL, Minshew NJ, Just MA. fMRI investigation of working memory for faces in autism: visual coding and underconnectivity with frontal areas. Cereb Cortex 2008; 18: 289-300.
- Sahyoun CP, Belliveau JW, Soulieres I, Schwartz S, Mody M. Neuroimaging of the functional and structural networks underlying visuospatial vs. linguistic reasoning in high-functioning autism. Neuropsychologia 2010; 48: 86-95.
- Stoner R, Chow ML, Boyle MP, Sunkin SM, Mouton PR, Roy S et al. Patches of disorganization in the neocortex of children with autism. N Engl J Med 2014; 370: 1209-1219.
- Grudzinska J, Schemm R, Haeger S, Nicke A, Schmalzing G, Betz H et al. The beta subunit determines the ligand binding properties of synaptic glycine receptors. Neuron 2005; 45: 727-739.
- Todorovic J, Welsh BT, Bertaccini EJ, Trudell JR, Mihic SJ. Disruption of an intersubunit electrostatic bond is a critical step in glycine receptor activation. Proc Natl Acad Sci USA 2010; 107: 7987-7992.
- Bode A, Lynch JW. The impact of human hyperekplexia mutations on glycine receptor structure and function. Mol Brain 2014; 7: 2.
- Kabashi E, Champagne N, Brustein E, Drapeau P. In the swim of things: recent insights to neurogenetic disorders from zebrafish. Trends Genet 2010; 26: 373-381.
- Warburton EC, Brown MW. Findings from animals concerning when interactions between perirhinal cortex, hippocampus and medial prefrontal cortex are necessary for recognition memory. Neuropsychologia 2010; 48: 2262-2272.
- Brown MW, Barker GR, Aggleton JP, Warburton EC. What pharmacological interventions indicate concerning the role of the perirhinal cortex in recognition memory. Neuropsychologia 2012; 50: 3122-3140.
- Rinaldi A, Romeo S, Agustin-Pavon C, Oliverio A, Mele A. Distinct patterns of Fos immunoreactivity in striatum and hippocampus induced by different kinds of novelty in mice. Neurobiol Learn Mem 2010; 94: 373-381.
- Tanaka DH, Toriumi K, Kubo K, Nabeshima T, Nakajima K. GABAergic precursor transplantation into the prefrontal cortex prevents phencyclidine-induced cognitive deficits. J Neurosci 2011; 31: 14116-14125.
- Fan J. Attentional network deficits in autism spectrum disorders. In: Buxbaum JD, Hof PR (eds). The Emerging Neuroscience of Autism Spectrum Disorders. Elsevier: Oxford, UK, 2011, pp 281-288.
- Tabuchi K, Blundell J, Etherton MR, Hammer RE, Liu X, Powell CM et al. A neuroligin-3 mutation implicated in autism increases inhibitory synaptic transmission in mice. Science 2007; 318: 71-76.
- Penagarikano O, Abrahams BS, Herman EI, Winden KD, Gdalyahu A, Dong H et al. Absence of CNTNAP2 leads to epilepsy, neuronal migration abnormalities, and core autism-related deficits. Cell 2011; 147: 235-246.
- Paluszkiewicz SM, Martin BS, Huntsman MM. Fragile X syndrome: the GABAergic system and circuit dysfunction. Dev Neurosci 2011; 33: 349-364.
- Rubenstein JL, Merzenich MM. Model of autism: increased ratio of excitation/inhibition in key neural systems. Genes Brain Behav 2003; 2: 255-267.
- Rubenstein JL. Three hypotheses for developmental defects that may underlie some forms of autism spectrum disorder. Curr Opin Neurol 2010; 23: 118-123.
- Gogolla N, Leblanc JJ, Quast KB, Sudhof TC, Fagiolini M, Hensch TK. Common circuit defect of excitatory-inhibitory balance in mouse models of autism. J Neurodev Disord 2009; 1: 172-181.
- Yizhar O, Fenno LE, Prigge M, Schneider F, Davidson TJ, O'Shea DJ et al. Neocortical excitation/inhibition balance in information processing and social dysfunction. Nature 2011; 477: 171-178.
- Vafa B, Lewis TM, Cunningham AM, Jacques P, Lynch JW, Schofield PR. Identification of a new ligand binding domain in the alpha1 subunit of the inhibitory glycine receptor. J Neurochem 1999; 73: 2158-2166.
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Milestone Review: Unlocking the Proteomics of Glycine Receptor Complexes
Fraser, S. D., Klaassen, R. V., Villmann, C., Smit, A. B., & Harvey, R. J. (2025) · Journal of Neurochemistry · doi:10.1111/jnc.70061 · Cited by 10 · see citing works
“…in a range of neuro-developmental disorders (NDDs) featuring autism spectrum disorder (ASD), developmental delay (DD), intellectual disability (ID) often accompanied by microcephaly, language delay, and epilepsy (Pilorge et al. 2016; Zhang et al. 2017; Chen et al. 2022; Marcogliese et al. 2022).”
Self-citationQing, Z., Yin, Z., Chen, B., Rao, Z., Yin, D., Li, D., Lu, Y., Shi, M., Li, S., Xu, Y., et al. (2026) · Frontiers in Neuroscience · doi:10.3389/fnins.2026.1964684
“Functional disturbances in this domain can induce local and systemic network dysfunction even in the absence of large-scale structural abnormalities, making it a critical component of the biological basis of non-syndromic ASD (Pilorge et al., 2016).”
- Authors
- Pilorge, M., Fassier, C., Le Corronc, H., Potey, A., Bai, J., De Gois, S., Delaby, E., Assouline, B., Guinchat, V, Devillard, F., Delorme, R., Nygren, G., Råstam, M., Meier, J. C., Otani, S., Cheval, H., James, V. M., Topf, M., Dear, T. N., Gillberg, C., Leboyer, M., Giros, B., Gautron, S., Hazan, J., Harvey, R. J., Legendre, P., & Betancur, C.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Centre Hospitalier Universitaire de Grenoble (FR)
- Assistance Publique – Hôpitaux de Paris (FR)
- University of Gothenburg (SE)
- Technische Universität Braunschweig (DE)
- Institute of Structural and Molecular Biology (GB)
- University of Leeds (GB)
- Inserm (FR)
- UCL School of Pharmacy (GB)
- ORCID
- Venue
- Molecular Psychiatry
- Published
- 2015-09-15
- Volume
- 21
- Issue
- 7
- Pages
- 936-945
- ISSN
- 1359-4184 (ISSN-L)
- 1476-5578
- PMC
- PMC5382231
- OpenAlex
- W2204563731
- Cited by
- 110
- References
- 11
- Citations by year
- 2026: 7 · 2025: 8 · 2024: 14 · 2023: 9 · 2022: 14 · 2021: 4 · 2020: 15 · 2019: 5 · 2018: 13 · 2017: 13 · 2016: 7 · 2015: 1
- FWCI
- 6.81
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Molecular Psychiatry (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- HAL (submittedVersion, other-oa)
- Adelaide Research & Scholarship (AR&S) (University of Adelaide) (submittedVersion)
- BIROn (Birkbeck, University of London) (submittedVersion)
- ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam) (submittedVersion)
- UCL Discovery (University College London) (submittedVersion)
- Lund University Publications (Lund University) (submittedVersion)
- Funders
- Autism Speaks
- Genome Canada
- National Alliance for Research on Schizophrenia and Depression
- Ontario Genomics
- Ontario Genomics Institute
- Leverhulme Trust (BB/K01692X/1, RPG-2012-519)
- Institut National de la Santé et de la Recherche Médicale
- Bundesministerium für Bildung und Forschung
- Centre National de la Recherche Scientifique
- Medical Research Council (G0600084, G0500833, MR/J004049/1)
- Biotechnology and Biological Sciences Research Council (BB/K01692X/1)
- Topics
- Life Sciences › Neuroscience › Cognitive Neuroscience › Autism Spectrum Disorder Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Keywords
- autism spectrum disorder, de novo missense variant, cell surface expression, object recognition memory, long-term potentiation, synaptic plasticity, learning and memory, zebrafish, knockout mice
- MeSH terms
- Autism Spectrum Disorder, Adolescent, Adult, Animals, Autistic Disorder, Child, Child, Preschool, Glycine, Humans, Male, Mice, Inbred C57BL, Synaptic Transmission, Neuronal Plasticity, Neurons, Zebrafish, Signal Transduction, Long-Term Potentiation, Receptors, Glycine, Mice, Neurogenesis
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