The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
Open accessAbstract
We describe a genetic variation map for the chicken genome containing 2.8 million single-nucleotide polymorphisms (SNPs). This map is based on a comparison of the sequences of three domestic chicken breeds (a broiler, a layer and a Chinese silkie) with that of their wild ancestor, red jungle fowl. Subsequent experiments indicate that at least 90% of the variant sites are true SNPs, and at least 70% are common SNPs that segregate in many domestic breeds. Mean nucleotide diversity is about five SNPs per kilobase for almost every possible comparison between red jungle fowl and domestic lines, between two different domestic lines, and within domestic lines—in contrast to the notion that domestic animals are highly inbred relative to their wild ancestors. In fact, most of the SNPs originated before domestication, and there is little evidence of selective sweeps for adaptive alleles on length scales greater than 100 kilobases.
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<tt>BLAT</tt> —The <tt>BLAST</tt> -Like Alignment Tool
Kent, W. J. (2002) · Genome Research · doi:10.1101/gr.229202 · Cited by 8,480
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
Ewing, B., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.186 · Cited by 5,439
The hitch-hiking effect of a favourable gene
Smith, J. M., & Haigh, J. (1974) · Genetical Research · doi:10.1017/s0016672300014634 · Cited by 3,415
International Chicken Genome Sequencing Consortium (2004) · Nature · doi:10.1038/nature03154 · Cited by 2,750
When Less Is More: Gene Loss as an Engine of Evolutionary Change
Olson, M. V. (1999) · The American Journal of Human Genetics · doi:10.1086/302219 · Cited by 437
Cited by
International Chicken Genome Sequencing Consortium (2004) · Nature · doi:10.1038/nature03154 · Cited by 2,750
Whole-genome resequencing reveals loci under selection during chicken domestication
Rubin, C.-J., Zody, M. C., Eriksson, J., Meadows, J. R. S., Sherwood, E., Webster, M. T., Jiang, L., Ingman, M., Sharpe, T., Ka, S., et al. (2010) · Nature · doi:10.1038/nature08832 · Cited by 1,138
Determinants of genetic diversity
Ellegren, H., & Galtier, N. (2016) · Nature Reviews Genetics · doi:10.1038/nrg.2016.58 · Cited by 874
Radiocarbon and DNA evidence for a pre-Columbian introduction of Polynesian chickens to Chile
Storey, A. A., Ramírez, J. M., Quiroz, D., Burley, D. V., Addison, D. J., Walter, R., Anderson, A. J., Hunt, T. L., Athens, J. S., Huynen, L., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0703993104 · Cited by 645
Genomic-Assisted Prediction of Genetic Value With Semiparametric Procedures
Gianola, D., Fernando, R. L., & Stella, A. (2006) · Genetics · doi:10.1534/genetics.105.049510 · Cited by 450
Metadata
- Authors
- International Chicken Polymorphism Map Consortium
- Venue
- Nature
- Published
- 2004-12
- Volume
- 432
- Issue
- 7018
- Pages
- 717-722
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2130631370
- Cited by
- 456
- References
- 5
- FWCI
- 18.18
- Type
- journal article
- Language
- en
- Open access
- bronze
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