The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
Open accessAbstract
Since the recognition of prokaryotes as essential components of the oceanic food web, bacterioplankton have been acknowledged as catalysts of most major biogeochemical processes in the sea. Studying heterotrophic bacterioplankton has been challenging, however, as most major clades have never been cultured or have only been grown to low densities in sea water. Here we describe the genome sequence of Silicibacter pomeroyi, a member of the marine Roseobacter clade (Fig. 1), the relatives of which comprise approximately 10-20% of coastal and oceanic mixed-layer bacterioplankton. This first genome sequence from any major heterotrophic clade consists of a chromosome (4,109,442 base pairs) and megaplasmid (491,611 base pairs). Genome analysis indicates that this organism relies upon a lithoheterotrophic strategy that uses inorganic compounds (carbon monoxide and sulphide) to supplement heterotrophy. Silicibacter pomeroyi also has genes advantageous for associations with plankton and suspended particles, including genes for uptake of algal-derived compounds, use of metabolites from reducing microzones, rapid growth and cell-density-dependent regulation. This bacterium has a physiology distinct from that of marine oligotrophs, adding a new strategy to the recognized repertoire for coping with a nutrient-poor ocean.
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Cites
Environmental genome shotgun sequencing of the sargasso sea
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Self-citationZengler, K., Toledo, G., Rappé, M., Elkins, J., Mathur, E. J., Short, J. M., & Keller, M. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.252630999 · Cited by 796
Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton
Suzuki, M. T., Béjà, O., Taylor, L. T., & DeLong, E. F. (2001) · Environmental Microbiology · doi:10.1046/j.1462-2920.2001.00198.x · Cited by 167
Cited by
Acinas, S. G., Sarma-Rupavtarm, R., Klepac-Ceraj, V., & Polz, M. F. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.12.8966-8969.2005 · Cited by 625
Life under extreme energy limitation: a synthesis of laboratory- and field-based investigations
Lever, M. A., Rogers, K. L., Lloyd, K. G., Overmann, J., Schink, B., Thauer, R. K., Hoehler, T. M., & Jørgensen, B. B. (2015) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuv020 · Cited by 378
Wagner-Döbler, I., Ballhausen, B., Berger, M., Brinkhoff, T., Buchholz, I., Bunk, B., Cypionka, H., Daniel, R., Drepper, T., Gerdts, G., et al. (2010) · The ISME Journal · doi:10.1038/ismej.2009.94 · Cited by 271
Trimethylamine N -oxide metabolism by abundant marine heterotrophic bacteria
Lidbury, I., Murrell, J. C., & Chen, Y. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1317834111 · Cited by 162
Handley, K. M., & Lloyd, J. R. (2013) · Frontiers in Microbiology · doi:10.3389/fmicb.2013.00136 · Cited by 126
Durham, B. P., Grote, J., Whittaker, K. A., Bender, S. J., Luo, H., Grim, S. L., Brown, J. M., Casey, J. R., Dron, A., Florez-Leiva, L., et al. (2014) · Standards in Genomic Sciences · doi:10.4056/sigs.4998989 · Cited by 62
Hopkinson, B. M., Roe, K. L., & Barbeau, K. A. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.00964-08 · Cited by 48
Metadata
- Authors
- Moran, M. A., Buchan, A., González, J. M., Heidelberg, J. F., Whitman, W. B., Kiene, R. P., Henriksen, J. R., King, G. M., Belas, R., Fuqua, C., Brinkac, L., Lewis, M., Johri, S., Weaver, B., Pai, G., Eisen, J. A., Rahe, E., Sheldon, W. M., Ye, W., Miller, T. R., Carlton, J., Rasko, D. A., Paulsen, I. T., Ren, Q., Daugherty, S. C., Deboy, R. T., Dodson, R. J., Durkin, A. S., Madupu, R., Nelson, W. C., Sullivan, S. A., Rosovitz, M. J., Haft, D. H., Selengut, J., & Ward, N.
- Venue
- Nature
- Published
- 2004-12
- Volume
- 432
- Issue
- 7019
- Pages
- 910-913
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2067865656
- Cited by
- 454
- References
- 3
- FWCI
- 26.22
- Type
- journal article
- Language
- en
- Open access
- hybrid
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Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
