Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system

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Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein

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The Cerebellum as a Neuronal Machine

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Cre reporter strains produced by targeted insertion of EYFP and ECFP into the ROSA26 locus

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Imaging Neuronal Subsets in Transgenic Mice Expressing Multiple Spectral Variants of GFP

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A guide to choosing fluorescent proteins

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Cerebellar Cortex

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A monomeric red fluorescent protein

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Partitioning of Lipid-Modified Monomeric GFPs into Membrane Microdomains of Live Cells

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A gene expression atlas of the central nervous system based on bacterial artificial chromosomes

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Serial Block-Face Scanning Electron Microscopy to Reconstruct Three-Dimensional Tissue Nanostructure

Denk, W., & Horstmann, H. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020329 · Cited by 1,644

Protoplasmic Astrocytes in CA1 Stratum Radiatum Occupy Separate Anatomical Domains

Bushong, E. A., Martone, M. E., Jones, Y. Z., & Ellisman, M. H. (2002) · The Journal of Neuroscience · doi:10.1523/jneurosci.22-01-00183.2002 · Cited by 1,578

Cortical Excitatory Neurons and Glia, But Not GABAergic Neurons, Are Produced in the Emx1-Expressing Lineage

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GERM-LINE TRANSFORMATION OF MICE

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An improved cyan fluorescent protein variant useful for FRET

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Pax6 Is Required for the Multipotent State of Retinal Progenitor Cells

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Reconstruct : a free editor for serial section microscopy

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Repeat-induced gene silencing in mammals

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Talking about a Revolution

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Array tomography: a new tool for imaging the molecular architecture and ultrastructure of neural circuits

Micheva, K. D., & Smith, S. J. (2007) · Neuron · doi:10.1016/j.neuron.2007.06.014 · Cited by 787

Mosaic Analysis with Double Markers in Mice

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Conditional site-specific recombination in mammalian cells using a ligand-dependent chimeric Cre recombinase.

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Overexpression of growth-associated proteins in the neurons of adult transgenic mice

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Structural and quantitative analysis of astrocytes in the mouse hippocampus

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Cyan-emitting and orange-emitting fluorescent proteins as a donor/acceptor pair for fluorescence resonance energy transfer

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Genetic evidence that relative synaptic efficacy biases the outcome of synaptic competition

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Multicolor “DiOlistic” Labeling of the Nervous System Using Lipophilic Dye Combinations

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Genetic analysis of the homeodomain transcription factor Chx10 in the retina using a novel multifunctional BAC transgenic mouse reporter

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Role of nucleotide sequences of loxP spacer region in Cre-mediated recombination

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Self-Excising Retroviral Vectors Encoding the Cre Recombinase Overcome Cre-Mediated Cellular Toxicity

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Towards neural circuit reconstruction with volume electron microscopy techniques

Briggman, K. L., & Denk, W. T. (2006) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2006.08.010 · Cited by 272

Embryonic stem cells and mice expressing different GFP variants for multiple non-invasive reporter usage within a single animal

Hadjantonakis, A., Macmaster, S., & Nagy, A. (2002) · BMC Biotechnology · doi:10.1186/1472-6750-2-11 · Cited by 236

Projection patterns of single mossy fibers originating from the lateral reticular nucleus in the rat cerebellar cortex and nuclei

Wu, H., Sugihara, I., & Shinoda, Y. (1999) · The Journal of Comparative Neurology · doi:10.1002/(sici)1096-9861(19990816)411:1 · Cited by 235

Engineering Mouse Chromosomes with Cre-loxP: Range, Efficiency, and Somatic Applications

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Quantitative comparison of DNA looping in vitro and in vivo: chromatin increases effective DNA flexibility at short distances

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Fluorescent Proteins Expressed in Mouse Transgenic Lines Mark Subsets of Glia, Neurons, Macrophages, and Dendritic Cells for Vital Examination

Zuo, Y., Lubischer, J. L., Kang, H., Tian, L., Mikesh, M., Marks, A., Scofield, V. L., Maika, S. D., Newman, C. S., Krieg, P. A., et al. (2004) · Journal of Neuroscience · doi:10.1523/jneurosci.3934-04.2004 · Cited by 162

Origin of the Precerebellar System

Rodriguez, C. I., & Dymecki, S. M. (2000) · Neuron · doi:10.1016/s0896-6273(00)00059-3 · Cited by 149

The role of neuronal identity in synaptic competition

Kasthuri, N., & Lichtman, J. W. (2003) · Nature · doi:10.1038/nature01836 · Cited by 141

A cre recombinase transgene with mosaic, widespread tamoxifen‐inducible action

Guo, C., Yang, W., & Lobe, C. G. (2002) · genesis · doi:10.1002/gene.10021 · Cited by 136

Transient requirement for ganglion cells during assembly of retinal synaptic layers

Kay, J. N., Roeser, T., Mumm, J. S., Godinho, L., Mrejeru, A., Wong, R., & Baier, H. (2004) · Development · doi:10.1242/dev.01040 · Cited by 105

Rapid elimination of mature autoreactive B cells demonstrated by Cre-induced change in B cell antigen receptor specificity in vivo

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Altering the Expression in Mice of Genes by Modifying Their 3′ Regions

Kakoki, M., Tsai, Y.-S., Kim, H., Hatada, S., Ciavatta, D. J., Takahashi, N., Arnold, L. W., Maeda, N., & Smithies, O. (2004) · Developmental Cell · doi:10.1016/s1534-5807(04)00094-2 · Cited by 56

Complex brain networks: graph theoretical analysis of structural and functional systems

Bullmore, E., & Sporns, O. (2009) · Nature Reviews Neuroscience · doi:10.1038/nrn2575 · Cited by 11,820

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

Madisen, L., Zwingman, T. A., Sunkin, S. M., Oh, S. W., Zariwala, H. A., Gu, H., Ng, L. L., Palmiter, R. D., Hawrylycz, M. J., Jones, A. R., et al. (2010) · Nature Neuroscience · doi:10.1038/nn.2467 · Cited by 6,907

Adult Neurogenesis in the Mammalian Brain: Significant Answers and Significant Questions

Ming, G.-L., & Song, H. (2011) · Neuron · doi:10.1016/j.neuron.2011.05.001 · Cited by 2,651

Parvalbumin neurons and gamma rhythms enhance cortical circuit performance

Sohal, V. S., Zhang, F., Yizhar, O., & Deisseroth, K. (2009) · Nature · doi:10.1038/nature07991 · Cited by 2,606

Structural and molecular interrogation of intact biological systems

Chung, K., Wallace, J., Kim, S.-Y., Kalyanasundaram, S., Andalman, A. S., Davidson, T. J., Mirzabekov, J. J., Zalocusky, K. A., Mattis, J., Denisin, A. K., et al. (2013) · Nature · doi:10.1038/nature12107 · Cited by 2,008

IN BRIEF

(2007) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2304

Generating and Imaging Multicolor Brainbow MicePreprint

Weissman, T. A., Sanes, J. R., Lichtman, J. W., & Livet, J. (2011) · Cold Spring Harbor Protocols · doi:10.1101/pdb.top114 · Cited by 50

Brainbow: Principle, Technique, and Applications

Makkithaya, K. N., Rath, S., Garemilla, S. S., Sowmya, S., Keerthana, S., & Mazumder, N. (2022) · Springer eBooks · doi:10.1007/978-981-19-1352-5_6 · Cited by 1

Brainbow: New Resources and Emerging Biological Applications for Multicolor Genetic Labeling and Analysis

Weissman, T. A., & Pan, Y. A. (2015) · Genetics · doi:10.1534/genetics.114.172510 · Cited by 167

Bright multicolor labeling of neuronal circuits with fluorescent proteins and chemical tags

Sakaguchi, R., Leiwe, M. N., & Imai, T. (2018) · eLife · doi:10.7554/elife.40350 · Cited by 76