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An obesity-associated gut microbiome with increased capacity for energy harvest

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Structure, function and diversity of the healthy human microbiome

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A human gut microbial gene catalogue established by metagenomic sequencing

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Principal components analysis corrects for stratification in genome-wide association studies

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Human gut microbes associated with obesity

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A core gut microbiome in obese and lean twins

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Human gut microbiome viewed across age and geography

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A metagenome-wide association study of gut microbiota in type 2 diabetes

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Linking long-term dietary patterns with gut microbial enterotypes

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The Role of Microbiota in Liver Transplantation and Liver Transplantation-Related Biliary Complications

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Nutrition and Mental Well-Being: Exploring Connections and Holistic Approaches

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Oral microbiota in aging and diseases

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Associations between changes in the gut microbiota and liver cirrhosis: a systematic review and meta-analysis

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Gut Microbiota and Metabolic Dysfunction-Associated Steatotic Liver Disease (MASLD): Emerging Pathogenic Mechanisms and Therapeutic Implications

Abdelhameed, F., Mustafa, A., Kite, C., Lagojda, L., Dallaway, A., Than, N. N., Kassi, E. N., Kyrou, I., & Randeva, H. S. (2025) · Livers · doi:10.3390/livers5010011 · Cited by 35

Small Bowel Transit and Altered Gut Microbiota in Patients With Liver Cirrhosis

Liu, Y., Jin, Y., Li, J., Zhao, L., Li, Z., Xu, J., Zhao, F., Feng, J., Chen, H., Fang, C., et al. (2018) · Frontiers in Physiology · doi:10.3389/fphys.2018.00470 · Cited by 35

Consumption of Goats’ Milk Protects Mice From Carbon Tetrachloride-Induced Acute Hepatic Injury and Improves the Associated Gut Microbiota Imbalance

Zhang, J., Wang, Z., Huo, D., & Shao, Y. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2018.01034 · Cited by 35

Human microbiome is a diagnostic biomarker in hepatocellular carcinoma

Rao, B., Lou, J., Wang, W., Li, A., Cui, G., Yu, Z., & Ren, Z. (2020) · Hepatobiliary & pancreatic diseases international · doi:10.1016/j.hbpd.2020.01.003 · Cited by 35

Gut Microbiota and Liver Fibrosis: One Potential Biomarker for Predicting Liver Fibrosis

Li, Z., Ni, M., Yu, H., Wang, L., Zhou, X., Chen, T., Liu, G., & Gao, Y. (2020) · BioMed Research International · doi:10.1155/2020/3905130 · Cited by 35

Persistence and reversibility of arsenic-induced gut microbiome and metabolome shifts in male rats after 30-days recovery duration

Du, X., Zhang, J., Zhang, X., Schramm, K., Nan, B., Huang, Q., Tian, M., & Shen, H. (2021) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2021.145972 · Cited by 35

Next Generation Probiotics for Neutralizing Obesogenic Effects: Taxa Culturing Searching Strategies

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Consistent Alterations of Human Fecal Microbes After Transplantation into Germ-Free Mice

Li, Y., Cao, W., Gao, N., Zhao, X., & Chen, W. (2021) · Genomics Proteomics & Bioinformatics · doi:10.1016/j.gpb.2020.06.024 · Cited by 35

Intestinal Fibrosis and Gut Microbiota: Clues From Other Organs

Zhan, S., Li, N., Liu, C., Mao, R., Wu, D., Li, T., Chen, M., Zhuang, X., & Zeng, Z. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.694967 · Cited by 35

Three-compartment septic tanks as sustainable on-site treatment facilities? Watch out for the potential dissemination of human-associated pathogens and antibiotic resistance

Tan, L., Zhang, C., Liu, F., Chen, P., Wei, X., Li, H., Gao, Y., Xu, Y., & Zheng, X. (2021) · Journal of Environmental Management · doi:10.1016/j.jenvman.2021.113709 · Cited by 35

Diet and gut microbiome in fatty liver and its associated liver cancer

Pan, Y., & Zhang, X. (2021) · Journal of Gastroenterology and Hepatology · doi:10.1111/jgh.15713 · Cited by 35

Gut Metagenome as a Potential Diagnostic and Predictive Biomarker in Slow Transit Constipation

Tian, H., Ye, C., Yang, B. K., Cui, J., Zheng, Z., Wu, C., Zhou, S., Lv, X., Qin, N., Qin, H., et al. (2022) · Frontiers in Medicine · doi:10.3389/fmed.2021.777961 · Cited by 35

Multi-Omics Association Reveals the Effects of Intestinal Microbiome–Host Interactions on Fat Deposition in Broilers

Yang, J., Yuan, Y., Monson, M. S., Wang, P., Mu, F., Zhang, Q., Wei, N., Zhang, K., Wang, Y., Leng, L., et al. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.815538 · Cited by 35

Correlation Between Gut Microbiota and Testosterone in Male Patients With Type 2 Diabetes Mellitus

Liu, S., Cao, R., Liu, L., Lv, Y., Qi, X., Yuan, Z., Fan, X., Yu, C., & Guan, Q. (2022) · Frontiers in Endocrinology · doi:10.3389/fendo.2022.836485 · Cited by 35

Biochemical, transcriptomic, gut microbiome responses and defense mechanisms of the earthworm Eisenia fetida to salt stress

Yang, X., Shang, G., & Wang, X. (2022) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2022.113684 · Cited by 35

Mechanistic insights into zearalenone-accelerated colorectal cancer in mice using integrative multi-omics approaches

Lo, E. K. K., Wang, X., Lee, P.-K., Wong, H.-C., Lee, J. C., Gómez-Gallego, C., Zhao, D., El-Nezami, H. S., & Li, J. (2023) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2023.02.048 · Cited by 35

The human gut microbiome as source of innovation for health: Which physiological and therapeutic outcomes could we expect?

Dore, J. M., Multon, M.-C., Béhier, J., Affagard, H., Andremont, A., Barthélémy, P., Batitsa, R., Bonneville, M., Bonny, C., Boyaval, G., et al. (2017) · Therapies · doi:10.1016/j.therap.2016.12.007 · Cited by 35

The Human Gut Microbiome in Liver Diseases

Davis, B., & Bajaj, J. (2017) · Seminars in Liver Disease · doi:10.1055/s-0037-1602763 · Cited by 34

Characteristics of the gut microbiota and serum metabolites in postmenopausal women with reduced bone mineral density

Yan, L., Wang, X., Yu, T., Qi, Z., Li, H., Nan, H., Wang, K., Luo, D., Hua, F., & Wang, W. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2024.1367325 · Cited by 34

Transient colonizing microbes promote gut dysbiosis and functional impairment

Lee, S., Meslier, V., Bidkhori, G., García-Guevara, F., Etienne‐Mesmin, L., Clasen, F., Park, J., Oñate, F. P., Cai, H., Chatelier, E. L., et al. (2024) · npj Biofilms and Microbiomes · doi:10.1038/s41522-024-00561-1 · Cited by 34

Mid infrared light treatment attenuates cognitive decline and alters the gut microbiota community in APP/PS1 mouse model

Wang, M., Cao, J., Amakye, W. K., Gong, C., Li, Q., & Ren, J. (2019) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2019.12.015 · Cited by 34

Active Vitamin D3 Treatment Attenuated Bacterial Translocation via Improving Intestinal Barriers in Cirrhotic Rats

Lee, P., Hsieh, Y.-C., Huo, T., Yang, U., Lin, C., Li, C., Huang, Y., Hou, M., Lin, H., & Lee, K. (2020) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.202000937 · Cited by 34

Improvement of intestinal flora: accompany with the antihypertensive effect of electroacupuncture on stage 1 hypertension

Wang, J., Yang, M., Wu, Q., Chen, J., Deng, S.-F., Chen, L., Wei, D., & Liang, F. (2021) · Chinese Medicine · doi:10.1186/s13020-020-00417-8 · Cited by 34

A critical assessment of gene catalogs for metagenomic analysis

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Saliva microbiome changes in thyroid cancer and thyroid nodules patients

Jiao, J., Zheng, Y., Zhang, Q., Xia, D., Zhang, L., & Ma, N. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.989188 · Cited by 34

Microbiome and Metabolomics in Liver Cancer: Scientific Technology

Ganesan, R., Yoon, S. J., & Suk, K. T. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms24010537 · Cited by 34

An integrated analysis of fecal microbiome and metabolomic features distinguish non-cirrhotic NASH from healthy control populations

Carr, R. M., Li, Y., Chau, L., Friedman, E. S., Lee, J., Adorini, L., Erickson, M., Zaru, L., Shringarpure, R., MacConell, L., et al. (2023) · Hepatology · doi:10.1097/hep.0000000000000474 · Cited by 34

Extreme spicy food cravers displayed increased brain activity in response to pictures of foods containing chili peppers: an fMRI study

Zhou, Y., Gao, X., Small, D. M., & Chen, H. (2019) · Appetite · doi:10.1016/j.appet.2019.104379 · Cited by 34

Rapid profiling of the preterm infant gut microbiota using nanopore sequencing aids pathogen diagnosticsPreprint

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Differential pattern of indigenous microbiome responses to probiotic Bifidobacterium lactis V9 consumption across subjects

Ma, C., Huo, D., You, Z., Peng, Q., Jiang, S., Chang, H., Zhang, J., & Zhang, H. (2020) · Food Research International · doi:10.1016/j.foodres.2020.109496 · Cited by 33

Disease- and stage-specific alterations of the oral and fecal microbiota in Alzheimer's disease

Troci, A., Philippen, S., Rausch, P., Rave, J., Weyland, G., Niemann, K., Jessen, K., Schmill, L.-P. A., Aludin, S., Franke, A., et al. (2023) · PNAS Nexus · doi:10.1093/pnasnexus/pgad427 · Cited by 33

Gut‑liver axis in liver disease: From basic science to clinical treatment (Review)

Wang, J., Wang, X., Zhuo, E., Chen, B., & Chan, S. (2024) · Molecular Medicine Reports · doi:10.3892/mmr.2024.13375 · Cited by 33

Environmental Mold and Mycotoxin Exposures Elicit Specific Cytokine and Chemokine Responses

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Increased risk of colorectal polyps in patients with non-alcoholic fatty liver disease undergoing liver transplant evaluation.

Bhatt, B. D., Lukose, T., Siegel, A. B., Brown, R. S., & Verna, E. C. (2015) · Europe PMC (PubMed Central) · doi:10.3978/j.issn.2078-6891.2015.050 · Cited by 33

Comparative metagenomics of the gut microbiota in wild greylag geese ( Anser anser ) and ruddy shelducks ( Tadorna ferruginea )

Wang, W., Zheng, S., Li, L., Yang, Y., Liu, Y., Wang, A., Sharshov, K., & Li, Y. (2018) · MicrobiologyOpen · doi:10.1002/mbo3.725 · Cited by 33

16S rRNA gene sequencing reveals an altered composition of the gut microbiota in chickens infected with a nephropathogenic infectious bronchitis virus

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Gut microbiome alterations and its link to corticosteroid resistance in immune thrombocytopenia

Wang, Y., Liu, F., Zhang, G., Su, Y. A., Sun, X., Chen, Q., Wang, C., Fu, H., He, Y., Zhu, X., et al. (2020) · Science China Life Sciences · doi:10.1007/s11427-020-1788-2 · Cited by 33

Bacterial O-GlcNAcase genes abundance decreases in ulcerative colitis patients and its administration ameliorates colitis in mice

He, X., Gao, J., Peng, L., Hu, T., Wan, Y., Zhou, M., Zhen, P., & Cao, H. (2020) · Gut · doi:10.1136/gutjnl-2020-322468 · Cited by 33

Bimetallic nitrogen-doped porous carbon derived from ZIF-L&FeTPP@ZIF-8 as electrocatalysis and application for antibiotic wastewater treatment

Li, S., Jiang, J., Ho, S., Li, F., & Zeng, W. (2021) · Separation and Purification Technology · doi:10.1016/j.seppur.2021.119259 · Cited by 33

Comprehensive Analysis of Fecal Microbiome and Metabolomics in Hepatic Fibrosis Rats Reveal Hepatoprotective Effects of Yinchen Wuling Powder From the Host-Microbial Metabolic Axis

Zhang, Y., Zhao, M., Jiang, X. S., Qiao, Q., Liu, T., Zhao, C., & Wang, M. (2021) · Frontiers in Pharmacology · doi:10.3389/fphar.2021.713197 · Cited by 33

Alterations of Gut Mycobiota Profiles in Adenoma and Colorectal Cancer

Gao, R., Xia, K., Wu, M., Zhong, H., Sun, J., Zhu, Y., Huang, L., Wu, X., Yin, L., Yang, R., et al. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.839435 · Cited by 33

Potential Role of Inflammation-Promoting Biliary Microbiome in Primary Sclerosing Cholangitis and Cholangiocarcinoma

Miyabe, K., Chandrasekhara, V., Wongjarupong, N., Chen, J., Yang, L., Johnson, S. P., Chia, N., Walther-Antonio, M. R. S., Yao, J. Z., Harrington, S. C., et al. (2022) · Cancers · doi:10.3390/cancers14092120 · Cited by 33

Modeling spatial interaction networks of the gut microbiota

Cao, X., Dong, A., Kang, G., Wang, X., Duan, L., Hou, H., Zhao, T., Wu, S., Liu, X., Huang, H., et al. (2022) · Gut Microbes · doi:10.1080/19490976.2022.2106103 · Cited by 33

Risk of dementia or cognitive impairment in non-alcoholic fatty liver disease: A systematic review and meta-analysis

Wang, L., Sang, B., & Zheng, Z. (2022) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2022.985109 · Cited by 33

The Microbial Ecology of Liver Abscesses in Cattle

Pinnell, L. J., & Morley, P. S. (2022) · Veterinary Clinics of North America Food Animal Practice · doi:10.1016/j.cvfa.2022.08.004 · Cited by 33

Diet and the microbiome

Murtaza, N., Ó Cuív, P., & Morrison, M. (2017) · Gastroenterology Clinics of North America · doi:10.1016/j.gtc.2016.09.005 · Cited by 32

Fecal Microbiota Transplantation and Its Potential Therapeutic Uses in Gastrointestinal Disorders

Heath, R. D. (2017) · Northern Clinics of Istanbul · doi:10.14744/nci.2017.10692 · Cited by 32

Gut Microbiota Alteration After Long-Term Consumption of Probiotics in the Elderly

Gao, R., Zhang, X., Huang, L., Shen, R., & Qin, H. (2018) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-018-9403-1 · Cited by 32

Are There Potential Applications of Fecal Microbiota Transplantation beyond Intestinal Disorders?

Zhou, Y., Xu, H., Huang, H., Li, Y., Chen, H., He, J., Du, Y., Chen, Y., Zhou, Y., & Nie, Y. (2019) · BioMed Research International · doi:10.1155/2019/3469754 · Cited by 32

An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data

Li, C., Chng, K. R., Kwah, J. S., Av‐Shalom, T. V., Tucker‐Kellogg, L., & Nagarajan, N. (2019) · Microbiome · doi:10.1186/s40168-019-0729-z · Cited by 32

The Microbiome and Hepatocellular Carcinoma

Rattan, P., Minacapelli, C. D., & Rustgi, V. K. (2020) · Liver Transplantation · doi:10.1002/lt.25828 · Cited by 32

Deoxycholic Acid and Lithocholic Acid Alleviate Liver Injury and Inflammation in Mice with Klebsiella pneumoniae-Induced Liver Abscess and Bacteremia

Zheng, Y., Yue, C., Zhang, H., Chen, H., Liu, Y., & Li, J. (2021) · Journal of Inflammation Research · doi:10.2147/jir.s298495 · Cited by 32

Metabolomic Predictors of Non-alcoholic Steatohepatitis and Advanced Fibrosis in Children

Kordy, K., Li, F., Lee, D., Kinchen, J. M., Jew, M., Rocque, M. E. L., Zabih, S., Saavedra, M., Woodward, C. L., Cunningham, N. J., et al. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.713234 · Cited by 32

Host–Microbiota Interactions in Liver Inflammation and Cancer

Giraud, J., & Saleh, M. (2021) · Cancers · doi:10.3390/cancers13174342 · Cited by 32

It takes guts to learn: machine learning techniques for disease detection from the gut microbiome

Curry, K. D., Nute, M., & Treangen, T. J. (2021) · Emerging Topics in Life Sciences · doi:10.1042/etls20210213 · Cited by 32

Gut Microbes and Hepatic Encephalopathy: From the Old Concepts to New Perspectives

Rocco, A., Sgamato, C., Compare, D., Coccoli, P., Nardone, O. M., & Nardone, G. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.748253 · Cited by 32

Human disease prediction from microbiome data by multiple feature fusion and deep learning

Chen, X., Zhu, Z., Zhang, W., Wang, Y., Wang, F., Yang, J., & Wong, K. (2022) · iScience · doi:10.1016/j.isci.2022.104081 · Cited by 32

EnsDeepDP: An Ensemble Deep Learning Approach for Disease Prediction Through Metagenomics

Shen, Y., Zhu, J., Deng, Z., Lu, W., & Wang, H. (2022) · IEEE Transactions on Computational Biology and Bioinformatics · doi:10.1109/tcbb.2022.3201295 · Cited by 32

Gut Microbes Meet Machine Learning: The Next Step towards Advancing Our Understanding of the Gut Microbiome in Health and Disease

Giuffrè, M., Moretti, R., & Tiribelli, C. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24065229 · Cited by 32

Therapeutic modulation of the liver immune microenvironment

Tilg, H., Adolph, T. E., & Tacke, F. (2023) · Hepatology · doi:10.1097/hep.0000000000000386 · Cited by 32

Antibiotic-induced imbalances in gut microbiota aggravates cholesterol accumulation and liver injuries in rats fed a high-cholesterol diet

Hu, X., Wang, T., Liang, S., Li, W., Wu, X., & Jin, F. (2015) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-015-6753-4 · Cited by 32

Is it time to target gut dysbiosis and immune dysfunction in the therapy of hepatic encephalopathy?

Shawcross, D. L. (2015) · Expert Review of Gastroenterology & Hepatology · doi:10.1586/17474124.2015.1035257 · Cited by 32

Messages from the first International Conference on Clinical Metagenomics (ICCMg)

Ruppé, É., Greub, G., & Schrenzel, J. (2017) · Microbes and Infection · doi:10.1016/j.micinf.2017.01.005 · Cited by 31

Ascites and Hepatorenal Syndrome

Adebayo, D., Neong, S. F., & Wong, F. S.-H. (2019) · Clinics in Liver Disease · doi:10.1016/j.cld.2019.06.002 · Cited by 31

Targeting Microbiota: What Do We Know about It at Present?

Derovs, A., Laivacuma, S., & Krūmiņa, A. (2019) · Medicina · doi:10.3390/medicina55080459 · Cited by 31

Organ transplantation and gut microbiota: current reviews and future challenges.

Xiao, J., Peng, Z., Liao, Y., Sun, H., Chen, W., Chen, X., Wei, Z., Yang, C., Nussler, A. K., Liu, J., et al. (2018) · Europe PMC (PubMed Central) · Cited by 31

Multidrug-Resistant Gram-Negative Bacteria Decolonization in Immunocompromised Patients: A Focus on Fecal Microbiota Transplantation

Alagna, L., Palomba, E., Mangioni, D., Bozzi, G., Lombardi, A., Ungaro, R., Castelli, V., Prati, D., Vecchi, M. L., Muscatello, A., et al. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21165619 · Cited by 31

The occurrence of antibiotic resistance genes in the microbiota of yak, beef and dairy cattle characterized by a metagenomic approach

Wang, W., Wei, X., Wu, L., Shang, X., Cheng, F., Li, B. J., Zhou, X., & Zhang, J. (2021) · The Journal of Antibiotics · doi:10.1038/s41429-021-00425-2 · Cited by 31

Fecal Microbiota Transplantation in Patients with HBV Infection or Other Chronic Liver Diseases: Update on Current Knowledge and Future Perspectives

Paratore, M., Santopaolo, F., Cammarota, G., Pompili, M., Gasbarrini, A., & Ponziani, F. R. (2021) · Journal of Clinical Medicine · doi:10.3390/jcm10122605 · Cited by 31

Microbiota and viral hepatitis: State of the art of a complex matter

Milošević, I., Russo, E., Vujović, A., Barac, A. M., Stevanović, O., Gitto, S., & Amedei, A. (2021) · World Journal of Gastroenterology · doi:10.3748/wjg.v27.i33.5488 · Cited by 31

An integrative understanding of the large metabolic shifts induced by antibiotics in critical illness

Marfil-Sánchez, A., Zhang, L., Alonso-Pernas, P., Mirhakkak, M. H., Mueller, M., Seelbinder, B., Ni, Y., Santhanam, R., Busch, A., Beemelmanns, C., et al. (2021) · Gut Microbes · doi:10.1080/19490976.2021.1993598 · Cited by 31

Emulating interactions between microorganisms and tumor microenvironment to develop cancer theranostics

Jiang, T., Yang, T., Chen, Y., Miao, Y., Xu, Y., Jiang, H., Yang, M., & Mao, C. (2022) · Theranostics · doi:10.7150/thno.70719 · Cited by 31

Microbiome–host systems interactions: Protective effects of propionate upon the blood–brain barrierPreprint

Hoyles, L., Snelling, T., Umlai, U. I., Nicholson, J. K., Carding, S. R., Glen, R. C., & McArthur, S. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/170548 · Cited by 31

The role of microbiomes in gastrointestinal cancers: new insights

Yarahmadi, A., & Afkhami, H. (2024) · Frontiers in Oncology · doi:10.3389/fonc.2023.1344328 · Cited by 30

Liver Cirrhosis: The Immunocompromised State

Rodríguez-Negrete, E. V., Gálvez-Martínez, M., Sánchez-Reyes, K., Fajardo-Felix, C. F., Pérez-Reséndiz, K. E., Madrigal‐Santillán, E., Morales‐González, Á., & Morales‐González, J. A. (2024) · Journal of Clinical Medicine · doi:10.3390/jcm13185582 · Cited by 30

Peptidoglycan isolated from the fruit of Lycium barbarum alleviates liver fibrosis in mice by regulating the TGF-β/Smad7 signaling and gut microbiota

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Clinical and microbiological features of infection in alcoholic hepatitis: an international cohort study

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