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Periodontal therapy favorably modulates the oral-gut-hepatic axis in cirrhosis

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A story of liver and gut microbes: how does the intestinal flora affect liver disease? A review of the literature

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Metagenomic analysis identified microbiome alterations and pathological association between intestinal microbiota and polycystic ovary syndrome

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Unique Features of Ethnic Mongolian Gut Microbiome revealed by metagenomic analysis

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The Role of the Gut Microbiome on Chronic Kidney Disease

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Serum Bile Acids Are Associated with Pathological Progression of Hepatitis B-Induced Cirrhosis

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Gut Microbiota’s Relationship with Liver Disease and Role in Hepatoprotection by Dietary Natural Products and Probiotics

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MetaPheno: A critical evaluation of deep learning and machine learning in metagenome-based disease prediction

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Gut Microbiota in Intestinal and Liver Disease

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Sex-dependent impact of Roundup on the rat gut microbiome

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Periodontal and inflammatory bowel diseases: Is there evidence of complex pathogenic interactions?

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The Gut-liver Axis in Immune Remodeling: New insight into Liver Diseases

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Role of Microbiota-Derived Metabolites in Alcoholic and Non-Alcoholic Fatty Liver Diseases

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Fecal microbiota transplantation in alcohol-associated acute-on-chronic liver failure: an open-label clinical trial

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Gut microbiota, cirrhosis, and alcohol regulate bile acid metabolism in the gut

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Microbial ecosystems are dominated by specialist taxa

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The Association of Hot Red Chili Pepper Consumption and Mortality: A Large Population-Based Cohort Study

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The gut microbiome in Parkinson's disease: A culprit or a bystander?

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The Intratumoral Bacterial Metataxonomic Signature of Hepatocellular Carcinoma

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Neuroinflammation in Murine Cirrhosis Is Dependent on the Gut Microbiome and Is Attenuated by Fecal Transplant

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Gut microbial DL-endopeptidase alleviates Crohn’s disease via the NOD2 pathway

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Homogeneous Biosensing Based on Magnetic Particle Labels

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Modulation of Gut Microbiome Composition and Function in Experimental Colitis Treated with Sulfasalazine

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The fecal microbiota of patients with pancreatic ductal adenocarcinoma and autoimmune pancreatitis characterized by metagenomic sequencing

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Microbiota, a key player in alcoholic liver disease

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Gut microbial dysbiosis associates hepatocellular carcinoma via the gut-liver axis

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Featured Gut Microbiomes Associated With the Progression of Chronic Hepatitis B Disease

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Pharmacological treatment for metabolic dysfunction–associated steatotic liver disease and related disorders: Current and emerging therapeutic options

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Hepatic NOD2 promotes hepatocarcinogenesis via a RIP2-mediated proinflammatory response and a novel nuclear autophagy-mediated DNA damage mechanism

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Microbiota-driven mechanisms at different stages of cancer development

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Pathogenic functions of host microbiota

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Impact of a high‑fat diet on intestinal stem cells and epithelial barrier function in middle‑aged female mice

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Interaction of bacterial metagenome and virome in patients with cirrhosis and hepatic encephalopathy

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A key genetic factor governing arabinan utilization in the gut microbiome alleviates constipation

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Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes

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Intestinal Microbiota-Derived GABA Mediates Interleukin-17 Expression during Enterotoxigenic Escherichia coli Infection

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Long-term dietary nitrite and nitrate deficiency causes the metabolic syndrome, endothelial dysfunction and cardiovascular death in mice

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Bacillus licheniformis normalize the ileum microbiota of chickens infected with necrotic enteritis

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Zinc and protein metabolism in chronic liver diseases

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The Role of Intestinal Bacteria and Gut–Brain Axis in Hepatic Encephalopathy

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Adlercreutzia equolifaciens Is an Anti-Inflammatory Commensal Bacterium with Decreased Abundance in Gut Microbiota of Patients with Metabolic Liver Disease

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Gut microbiome and lipid metabolism

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Oral Dysbiosis and Inflammation in Parkinson’s Disease

Fleury, V., Zekeridou, A., Lazarević, V., Gaïa, N., Giannopoulou, C., Genton, L., Cancela, J., Girard, M., Goldstein, R., Bally, J. F., et al. (2021) · Journal of Parkinson s Disease · doi:10.3233/jpd-202459 · Cited by 95

Bifidobacterium pseudocatenulatum LI09 and Bifidobacterium catenulatum LI10 attenuate D-galactosamine-induced liver injury by modifying the gut microbiota

Fang, D., Shi, D., Lv, L., Gu, S., Wu, W., Chen, Y., Guo, J., Li, A., Hu, X., Guo, F., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-09395-8 · Cited by 95

Non-absorbable disaccharides versus placebo/no intervention and lactulose versus lactitol for the prevention and treatment of hepatic encephalopathy in people with cirrhosis

Gluud, L. L., Vilstrup, H., & Morgan, M. Y. (2016) · Cochrane Database of Systematic Reviews · doi:10.1002/14651858.cd003044.pub3 · Cited by 95

Metagenomic Analysis of Cecal Microbiome Identified Microbiota and Functional Capacities Associated with Feed Efficiency in Landrace Finishing Pigs

Tan, Z., Yang, T., Wang, Y., Xing, K., Zhang, F., Zhao, X., Ao, H., Chen, S., Liu, J., & Wang, C. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01546 · Cited by 94

Metagenomic cross-talk: the regulatory interplay between immunogenomics and the microbiome

Levy, M., Thaiss, C. A., & Elinav, E. (2015) · Genome Medicine · doi:10.1186/s13073-015-0249-9 · Cited by 94

Biomarkers for oralization during long-term proton pump inhibitor therapy predict survival in cirrhosis

Horvath, A., Rainer, F., Bashir, M., Leber, B., Schmerboeck, B., Klymiuk, I., Groselj-Strele, A., Durdevic, M., Freedberg, D. E., Abrams, J. A., et al. (2019) · Scientific Reports · doi:10.1038/s41598-019-48352-5 · Cited by 93

Multicenter assessment of microbial community profiling using 16S rRNA gene sequencing and shotgun metagenomic sequencing

Han, D., Gao, P., Li, R., Tan, P., Xie, J., Zhang, R., & Li, J. (2020) · Journal of Advanced Research · doi:10.1016/j.jare.2020.07.010 · Cited by 93

From the Cover: Exposure to Oral Antibiotics Induces Gut Microbiota Dysbiosis Associated with Lipid Metabolism Dysfunction and Low-Grade Inflammation in Mice

Jin, Y., Wu, Y., Zeng, Z., Jin, C., Wu, S., Wang, Y., & Fu, Z. (2016) · Toxicological Sciences · doi:10.1093/toxsci/kfw150 · Cited by 93

Microbiota, Obesity and NAFLD

Lau, L. H. S., & Wong, S. H. (2018) · Advances in experimental medicine and biology · doi:10.1007/978-981-10-8684-7_9 · Cited by 93

Molecular and Cellular Mediators of the Gut-Liver Axis in the Progression of Liver Diseases

Bruneau, A., Hundertmark, J., Guillot, A., & Tacke, F. (2021) · Frontiers in Medicine · doi:10.3389/fmed.2021.725390 · Cited by 93

Periodontitis is associated with significant hepatic fibrosis in patients with non-alcoholic fatty liver disease

Alazawi, W., Bernabé, E., Tai, D., Janicki, T., Kemos, P., Samsuddin, S., Syn, W., Gillam, D. G., & Turner, W. (2017) · PLoS ONE · doi:10.1371/journal.pone.0185902 · Cited by 93

Gut microbiota and allogeneic transplantation

Wang, W., Xu, S., Ren, Z., Jiang, J., & Zheng, S. (2015) · Journal of Translational Medicine · doi:10.1186/s12967-015-0640-8 · Cited by 92

Gut Microbiota Alterations can predict Hospitalizations in Cirrhosis Independent of Diabetes Mellitus

Bajaj, J. S., Betrapally, N. S., Hylemon, P. B., Thacker, L. R., Daita, K., Kang, D. J., White, M. B., Unser, A. B., Fagan, A., Gavis, E. A., et al. (2015) · Scientific Reports · doi:10.1038/srep18559 · Cited by 92

Disorganized Gut Microbiome Contributed to Liver Cirrhosis Progression: A Meta-Omics-Based Study

Shao, L., Ling, Z., Chen, D., Liu, Y., Yang, F., & Li, L. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.03166 · Cited by 92

SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis

Volant, S., Lechat, P., Woringer, P., Motreff, L., Campagne, P., Malabat, C., Kennedy, S., & Ghozlane, A. (2020) · BMC Bioinformatics · doi:10.1186/s12859-020-03666-4 · Cited by 92

Ochratoxin A: its impact on poultry gut health and microbiota, an overview

Zhai, S., Zhu, Y., Feng, P., Li, M., Wang, W., Yang, L., & Yang, Y. (2021) · Poultry Science · doi:10.1016/j.psj.2021.101037 · Cited by 92

Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols

Forry, S. P., Servetas, S. L., Kralj, J. G., Soh, K., Hadjithomas, M., Cano, R. J., Carlin, M. R., de Amorim, M. G., Auch, B., Bakker, M. G., et al. (2024) · Scientific Reports · doi:10.1038/s41598-024-57981-4 · Cited by 92

Community-level cohesion without cooperation

Tikhonov, M. (2016) · eLife · doi:10.7554/elife.15747 · Cited by 92

Interaction between periodontitis and liver diseases

Han, P., Sun, D., & Yang, J. (2016) · Biomedical Reports · doi:10.3892/br.2016.718 · Cited by 92

Microbiota and gastrointestinal cancer

Weng, M., Chiu, Y., Wei, P., Chiang, C.-W., Fang, H., & Wei, S. (2019) · Journal of the Formosan Medical Association · doi:10.1016/j.jfma.2019.01.002 · Cited by 91

Microbiome diurnal rhythmicity and its impact on host physiology and disease risk

Nobs, S. P., Tuganbaev, T., & Elinav, E. (2019) · EMBO Reports · doi:10.15252/embr.201847129 · Cited by 91

Interactions between the cecal microbiota and non-alcoholic steatohepatitis using laying hens as the model

Hamid, H., Zhang, J. Y., Li, W. X., Liu, C., Li, M., Zhao, L. H., Ji, C., & Ma, Q. G. (2019) · Poultry Science · doi:10.3382/ps/pey596 · Cited by 90

Comparison of the Gut Microbe Profiles and Numbers Between Patients with Liver Cirrhosis and Healthy Individuals

Liu, J., Wu, D., Ahmed, A., Li, X., Ma, Y., Tang, L., Mo, D., Ma, Y., & Xin, Y. (2012) · Current Microbiology · doi:10.1007/s00284-012-0105-8 · Cited by 70

Associations between changes in the gut microbiota and liver cirrhosis: a systematic review and meta-analysis

Liu, Y., Chen, Z., Li, C., Sun, T., Luo, X., Jiang, B., Liu, M., Wang, Q., Li, T., Cao, J., et al. (2025) · BMC Gastroenterology · doi:10.1186/s12876-025-03589-5 · Cited by 35

Identification of Diagnostic Biomarkers for Compensatory Liver Cirrhosis Based on Gut Microbiota and Urine Metabolomics Analyses

Chen, Y., Chen, S., Xu, C., Li, Y., Chu, S., Bao, J., Wang, J., & Jun-wei, W. (2023) · Molecular Biotechnology · doi:10.1007/s12033-023-00922-9 · Cited by 8

Characterization of fecal microbial communities in patients with liver cirrhosis

Chen, Y., Yang, F., Lu, H., Wang, B., Chen, Y., Lei, D., Wang, Y., Zhu, B., & Li, L. (2011) · Hepatology · doi:10.1002/hep.24423 · Cited by 1,038

Gut microbiome and metabolome signatures in liver cirrhosis-related complications

Sharma, S. P., Gupta, H., Kwon, G.-H., Lee, S., Song, S. H., Kim, J. S., Park, J. H., Kim, M. J., Yang, D., Park, H., et al. (2024) · Clinical and Molecular Hepatology · doi:10.3350/cmh.2024.0349 · Cited by 42