Alterations of the human gut microbiome in liver cirrhosis

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1. A Gut Microbiome Signature for Cirrhosis Due to Nonalcoholic Fatty Liver Disease
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3. Fecal microbiota manipulation prevents dysbiosis and alcohol-induced liver injury in mice
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4. Salivary microbiota reflects changes in gut microbiota in cirrhosis with hepatic encephalopathy
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5. Connections between the human gut microbiome and gestational diabetes mellitus
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6. Gut reactions: Breaking down xenobiotic–microbiome interactions
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7. Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes
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8. Therapeutic Opportunities in Inflammatory Bowel Disease: Mechanistic Dissection of Host-Microbiome Relationships
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9. Gut-dependent microbial translocation induces inflammation and cardiovascular events after ST-elevation myocardial infarction
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10. Specific gut microbiota features and metabolic markers in postmenopausal women with obesity
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11. Understanding the Role of the Gut Microbiome and Microbial Metabolites in Non-Alcoholic Fatty Liver Disease: Current Evidence and Perspectives
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12. Fecal Microbial Transplant Capsules Are Safe in Hepatic Encephalopathy: A Phase 1, Randomized, Placebo‐Controlled Trial
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13. Specific Gut Microbiome Signature Predicts the Early-Stage Lung Cancer
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14. Management of the critically ill patient with cirrhosis: A multidisciplinary perspective
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15. Glycine-based treatment ameliorates NAFLD by modulating fatty acid oxidation, glutathione synthesis, and the gut microbiome
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16. Probiotic Bifidobacterium lactis V9 Regulates the Secretion of Sex Hormones in Polycystic Ovary Syndrome Patients through the Gut-Brain Axis
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17. A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems
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18. A faecal microbiota signature with high specificity for pancreatic cancer
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19. A metagenomic study of the gut microbiome in Behcet’s disease
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20. The microbiota in cirrhosis and its role in hepatic decompensation
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21. High-fat diet-induced metabolic syndrome and oxidative stress in obese rats are ameliorated by yogurt supplementation
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22. Microbial ecology perturbation in human IgA deficiency
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23. The gut microbiota: A treasure for human health
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24. Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
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25. Microbial impact on cholesterol and bile acid metabolism: current status and future prospects
    Kriaa, Aicha, Bourgin, Mélanie, Potiron, Aline, Mkaouar, Héla, Jablaoui, Amin, Gérard, Philippe, Maguin, Emmanuelle, Rhimi, Moez · 2019 · Journal of Lipid Research
26. Alterations of the gut microbiome in Chinese patients with systemic lupus erythematosus
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27. Microbiota, cirrhosis, and the emerging oral-gut-liver axis
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28. Metabolic retroconversion of trimethylamine N-oxide and the gut microbiota
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29. A catalog of tens of thousands of viruses from human metagenomes reveals hidden associations with chronic diseases
    Michael J. Tisza, Christopher B. Buck · 2021 · Proceedings of the National Academy of Sciences
30. Identification of Prosthetic Joint Infection Pathogens Using a Shotgun Metagenomics Approach
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31. Aging progression of human gut microbiota
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32. Gut microbiota and metabolite alterations associated with reduced bone mineral density or bone metabolic indexes in postmenopausal osteoporosis
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33. Prediction of Early Childhood Caries via Spatial-Temporal Variations of Oral Microbiota
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34. Xiexin Tang improves the symptom of type 2 diabetic rats by modulation of the gut microbiota
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35. Oral Bacteria and Intestinal Dysbiosis in Colorectal Cancer
    Ioannis Koliarakis, Ippokratis Messaritakis, Τaxiarchis Κonstantinos Νikolouzakis, George Hamilos, John Souglakos, John Tsiaoussis · 2019 · International Journal of Molecular Sciences
36. Microbiome as a therapeutic target in alcohol-related liver disease
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37. Nonalcoholic Fatty Liver Disease: Modulating Gut Microbiota to Improve Severity?
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38. Review article: the human intestinal virome in health and disease
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39. Baseline human gut microbiota profile in healthy people and standard reporting template
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40. A core microbiome signature as an indicator of health
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41. Sex- and age-related trajectories of the adult human gut microbiota shared across populations of different ethnicities
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42. The microbiome in respiratory medicine: current challenges and future perspectives
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43. Oral–Gut Microbiome Axis in Gastrointestinal Disease and Cancer
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44. The human microbiome
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45. Alterations and correlations of the gut microbiome, metabolism and immunity in patients with primary biliary cirrhosis
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46. Metagenome-wide association study of gut microbiome revealed novel aetiology of rheumatoid arthritis in the Japanese population
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47. Changes in blood microbiota profiles associated with liver fibrosis in obese patients: A pilot analysis
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48. Gut microbial profile analysis by MiSeq sequencing of pancreatic carcinoma patients in China
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49. Rifaximin-α reduces gut-derived inflammation and mucin degradation in cirrhosis and encephalopathy: RIFSYS randomised controlled trial
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50. Disordered gut microbiota and alterations in metabolic patterns are associated with atrial fibrillation
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51. Non-alcoholic fatty liver disease: pathophysiological concepts and treatment options
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52. Adjusting for age improves identification of gut microbiome alterations in multiple diseases
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53. From correlation to causality: the case of Subdoligranulum
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54. Stroke Dysbiosis Index (SDI) in Gut Microbiome Are Associated With Brain Injury and Prognosis of Stroke
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55. Oral microbiota: A new view of body health
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56. Oral supplementation of healthy adults with 2′- O -fucosyllactose and lacto- N -neotetraose is well tolerated and shifts the intestinal microbiota
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57. Alteration in gut microbiota associated with hepatitis B and non-hepatitis virus related hepatocellular carcinoma
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58. Distinct fecal and oral microbiota composition in human type 1 diabetes, an observational study
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59. Review article: the gut microbiome as a therapeutic target in the pathogenesis and treatment of chronic liver disease
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60. Consumption of spicy foods and total and cause specific mortality: population based cohort study
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61. Profile of Gut Microbiota Associated With the Presence of Hepatocellular Cancer in Patients With Liver Cirrhosis
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62. Dyspepsia and the microbiome: time to focus on the small intestine
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63. Codiversification of gut microbiota with humans
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64. Aggravation of collagen-induced arthritis by orally administered Porphyromonas gingivalis through modulation of the gut microbiota and gut immune system
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65. Advances in drug development for hepatocellular carcinoma: clinical trials and potential therapeutic targets
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66. Functional metagenomic discovery of bacterial effectors in the human microbiome and isolation of commendamide, a GPCR G2A/132 agonist
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67. Protective Microbiota: From Localized to Long-Reaching Co-Immunity
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68. Disordered intestinal microbes are associated with the activity of Systemic Lupus Erythematosus
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69. Dysbiosis of small intestinal microbiota in liver cirrhosis and its association with etiology
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70. Link between gut‐microbiome derived metabolite and shared gene‐effects with hepatic steatosis and fibrosis in NAFLD
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71. Food additives, contaminants and other minor components: effects on human gut microbiota—a review
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72. Utilizing the gut microbiome in decompensated cirrhosis and acute-on-chronic liver failure
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73. Review article: the future of microbiome‐based therapeutics
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74. Guild-based analysis for understanding gut microbiome in human health and diseases
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75. Contributing roles of mitochondrial dysfunction and hepatocyte apoptosis in liver diseases through oxidative stress, post-translational modifications, inflammation, and intestinal barrier dysfunction
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76. Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome
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77. Stunted childhood growth is associated with decompartmentalization of the gastrointestinal tract and overgrowth of oropharyngeal taxa
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78. Gut microbial dysbiosis is associated with development and progression of radiation enteritis during pelvic radiotherapy
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79. Integrated analysis of microbiome and host transcriptome reveals correlations between gut microbiota and clinical outcomes in HBV-related hepatocellular carcinoma
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80. Malnutrition in Patients with Liver Cirrhosis
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81. A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction
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82. Roles of Macrophages in the Development and Treatment of Gut Inflammation
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83. The Gut Microbiota and Liver Disease
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84. Alternation of Gut Microbiota in Patients with Pulmonary Tuberculosis
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85. Intestinal bacterial signatures of white feces syndrome in shrimp
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86. Examining the healthy human microbiome concept
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87. Gut microbiome composition is associated with temperament during early childhood
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88. Gut Microbes and Health: A Focus on the Mechanisms Linking Microbes, Obesity, and Related Disorders
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89. DeepMicro: Deep representation learning for disease prediction based on microbiome data
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90. Gut Microbial Dysbiosis Is Associated with Altered Hepatic Functions and Serum Metabolites in Chronic Hepatitis B Patients
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91. Gut Microbiota Dysbiosis in Obesity-Linked Metabolic Diseases and Prebiotic Potential of Polyphenol-Rich Extracts
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92. Antibiotic resistome in a large‐scale healthy human gut microbiota deciphered by metagenomic and network analyses
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93. Role of the Gut–Liver Axis in Liver Inflammation, Fibrosis, and Cancer: A Special Focus on the Gut Microbiota Relationship
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94. Alterations in Gut Microbiome in Cirrhosis as Assessed by Quantitative Metagenomics: Relationship With Acute-on-Chronic Liver Failure and Prognosis
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95. Intestinal and fecal pH in human health
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96. Characterization of Gut Microbiota, Bile Acid Metabolism, and Cytokines in Intrahepatic Cholangiocarcinoma
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97. Gut dysbiosis associated with hepatitis C virus infection
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98. Gut Microbiota and NAFLD: Pathogenetic Mechanisms, Microbiota Signatures, and Therapeutic Interventions
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99. Longitudinal profiling of the microbiome at four body sites reveals core stability and individualized dynamics during health and disease
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100. Gut Microbiota: Its Role in Hepatic Encephalopathy
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